Wall clock time and date at job start Fri Apr 10 2020 18:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99999 * 2 1 4 4 C 1.53007 * 109.47161 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46952 * 65.60565 * 4 3 2 6 6 C 1.46510 * 119.99706 * 81.91418 * 5 4 3 7 7 C 1.50703 * 109.46716 * 84.99782 * 6 5 4 8 8 H 1.08001 * 119.99919 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99424 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00143 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99494 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47223 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46526 * 120.00394 * 11 9 7 14 14 H 1.48496 * 109.46952 * 240.00062 * 11 9 7 15 15 S 1.65597 * 120.00209 * 261.91813 * 5 4 3 16 16 O 1.42097 * 106.40334 * 18.08046 * 15 5 4 17 17 O 1.42104 * 106.40151 * 151.00746 * 15 5 4 18 18 N 1.65609 * 107.21358 * 264.53954 * 15 5 4 19 19 C 1.47418 * 125.64945 * 263.56131 * 18 15 5 20 20 C 1.55129 * 104.72270 * 155.82054 * 19 18 15 21 21 C 1.55157 * 101.48633 * 37.29326 * 20 19 18 22 22 H 1.09005 * 110.71730 * 82.69593 * 21 20 19 23 23 O 1.42894 * 110.87588 * 205.89881 * 21 20 19 24 24 C 1.42903 * 114.00562 * 263.61323 * 23 21 20 25 25 C 1.47027 * 125.64422 * 83.87416 * 18 15 5 26 26 H 1.08996 * 109.47221 * 60.00036 * 1 2 3 27 27 H 1.08999 * 109.47303 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46810 * 299.99858 * 1 2 3 29 29 H 1.09001 * 109.47199 * 60.00440 * 3 2 1 30 30 H 1.08997 * 109.46979 * 299.99798 * 3 2 1 31 31 H 1.08992 * 109.46984 * 185.60663 * 4 3 2 32 32 H 1.08994 * 109.46950 * 305.61200 * 4 3 2 33 33 H 1.08994 * 109.47058 * 204.99790 * 6 5 4 34 34 H 1.09005 * 109.46858 * 324.99955 * 6 5 4 35 35 H 0.97000 * 119.99272 * 180.02562 * 10 9 7 36 36 H 1.09002 * 110.36980 * 274.74920 * 19 18 15 37 37 H 1.09001 * 110.36675 * 37.07115 * 19 18 15 38 38 H 1.09001 * 111.19523 * 279.19188 * 20 19 18 39 39 H 1.09003 * 110.94016 * 155.28771 * 20 19 18 40 40 H 1.09002 * 109.46599 * 59.99320 * 24 23 21 41 41 H 1.08994 * 109.47814 * 179.97438 * 24 23 21 42 42 H 1.09004 * 109.46548 * 300.00178 * 24 23 21 43 43 H 1.08998 * 109.88170 * 300.43677 * 25 18 15 44 44 H 1.09004 * 109.88494 * 61.60163 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9767 0.5777 -1.2589 6 6 4.1177 1.4036 -2.4607 7 6 5.4767 2.0550 -2.4659 8 1 6.1664 1.8717 -1.6553 9 6 5.8397 2.8840 -3.5061 10 7 4.9999 3.1067 -4.4934 11 14 7.5240 3.6921 -3.5121 12 1 8.2735 3.2832 -2.2971 13 1 8.2728 3.2663 -4.7219 14 1 7.3646 5.1684 -3.5227 15 16 4.3160 -1.0419 -1.3227 16 8 3.6982 -1.6265 -0.1843 17 8 4.0431 -1.4569 -2.6541 18 7 5.9493 -1.2095 -1.1062 19 6 6.9486 -1.3490 -2.1810 20 6 8.2767 -0.8530 -1.5513 21 6 8.1510 -1.3908 -0.1014 22 1 8.4579 -2.4355 -0.0497 23 8 8.9173 -0.5952 0.8051 24 6 10.2145 -1.1234 1.0885 25 6 6.6421 -1.2501 0.1899 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.6887 1.8464 0.8900 30 1 1.6886 1.8463 -0.8900 31 1 3.9784 2.1755 0.0997 32 1 3.8507 0.5593 0.8345 33 1 4.0116 0.7773 -3.3464 34 1 3.3458 2.1732 -2.4653 35 1 5.2556 3.6897 -5.2253 36 1 7.0363 -2.3922 -2.4844 37 1 6.6778 -0.7265 -3.0339 38 1 8.3349 0.2355 -1.5605 39 1 9.1360 -1.2924 -2.0579 40 1 10.7863 -1.1981 0.1635 41 1 10.7324 -0.4620 1.7830 42 1 10.1143 -2.1129 1.5346 43 1 6.4551 -0.3275 0.7393 44 1 6.2949 -2.1058 0.7692 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337063249.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:31 Heat of formation + Delta-G solvation = -155.492733 kcal Electronic energy + Delta-G solvation = -27788.357146 eV Core-core repulsion = 23868.423649 eV Total energy + Delta-G solvation = -3919.933497 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.91110 -37.70855 -36.45460 -36.29934 -35.35352 -35.02599 -32.57061 -30.01440 -29.41617 -28.70198 -26.70000 -26.23670 -25.74360 -23.01388 -22.26621 -21.39403 -21.03035 -18.38493 -17.26400 -17.16203 -16.67111 -16.30709 -16.18218 -15.52057 -15.25966 -15.03318 -14.92507 -14.52447 -14.44031 -14.21749 -13.67045 -13.27112 -12.81835 -12.67163 -12.61654 -12.42748 -12.08372 -11.89414 -11.66741 -11.51264 -11.46701 -11.38082 -11.22292 -11.16406 -11.08164 -10.99111 -10.93605 -10.62383 -10.50696 -10.42358 -10.03932 -9.74425 -9.53577 -9.28419 -8.60174 -8.47863 -7.99348 -6.10114 -4.16237 1.35090 3.23892 3.32820 3.36159 3.50658 3.81122 4.20847 4.26036 4.37774 4.68684 4.77249 5.05984 5.15210 5.23858 5.26489 5.31111 5.43386 5.49568 5.52536 5.57279 5.58657 5.65396 5.70813 5.72460 5.84113 5.88150 5.88762 5.97033 6.01187 6.18696 6.32561 6.43957 6.49184 6.61075 6.80811 7.21170 7.37405 7.46844 7.54332 7.70514 7.88583 8.17631 8.90667 9.49945 10.97756 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.009219 B = 0.007033 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3036.428476 B = 3980.022004 C = 5943.429990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.377 6.377 3 C 0.040 3.960 4 C 0.136 3.864 5 N -0.986 5.986 6 C 0.245 3.755 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.064 3.936 10 N -0.891 5.891 11 Si 0.890 3.110 12 H -0.270 1.270 13 H -0.283 1.283 14 H -0.284 1.284 15 S 2.802 3.198 16 O -0.977 6.977 17 O -0.978 6.978 18 N -1.014 6.014 19 C 0.127 3.873 20 C -0.150 4.150 21 C 0.079 3.921 22 H 0.074 0.926 23 O -0.377 6.377 24 C 0.032 3.968 25 C 0.128 3.872 26 H 0.038 0.962 27 H 0.080 0.920 28 H 0.035 0.965 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.036 0.964 35 H 0.263 0.737 36 H 0.060 0.940 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.041 0.959 41 H 0.084 0.916 42 H 0.040 0.960 43 H 0.074 0.926 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.588 -6.774 9.938 12.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.295 6.295 3 C -0.038 4.038 4 C 0.009 3.991 5 N -0.827 5.827 6 C 0.123 3.877 7 C -0.575 4.575 8 H 0.083 0.917 9 C -0.139 4.139 10 N -0.529 5.529 11 Si 0.717 3.283 12 H -0.195 1.195 13 H -0.209 1.209 14 H -0.211 1.211 15 S 2.811 3.189 16 O -0.961 6.961 17 O -0.963 6.963 18 N -0.853 5.853 19 C 0.001 3.999 20 C -0.189 4.189 21 C 0.020 3.980 22 H 0.092 0.908 23 O -0.295 6.295 24 C -0.064 4.064 25 C 0.002 3.998 26 H 0.056 0.944 27 H 0.099 0.901 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.059 0.941 41 H 0.103 0.897 42 H 0.059 0.941 43 H 0.093 0.907 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.889 -7.368 9.687 12.509 hybrid contribution 1.159 1.050 -0.219 1.579 sum 4.049 -6.318 9.468 12.081 Atomic orbital electron populations 1.22694 0.82205 1.02260 0.99411 1.88063 1.18667 1.27554 1.95257 1.23116 0.95458 0.85035 1.00232 1.21086 0.91312 1.00590 0.86144 1.57716 1.79823 1.27960 1.17170 1.19173 0.97152 0.90752 0.80599 1.21634 1.00476 1.28290 1.07055 0.91662 1.24951 0.97199 0.96407 0.95335 1.69953 1.35392 1.37304 1.10269 0.86573 0.84337 0.79225 0.78127 1.19451 1.20935 1.21062 1.01371 0.71264 0.73312 0.72924 1.93565 1.73578 1.76291 1.52669 1.93557 1.83092 1.81455 1.38152 1.59172 1.25126 1.89009 1.12002 1.21872 0.86813 1.00346 0.90853 1.23308 0.97377 1.03455 0.94792 1.23180 0.91242 0.94123 0.89443 0.90769 1.87936 1.27346 1.49401 1.64802 1.22769 0.84730 0.98824 1.00125 1.21458 0.90573 1.02274 0.85528 0.94378 0.90095 0.94604 0.93076 0.92523 0.88774 0.90561 0.93372 0.94643 0.92725 0.92155 0.88917 0.88933 0.90585 0.94055 0.89743 0.94140 0.90732 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.38 -6.92 9.52 -46.97 -0.45 -7.37 16 3 C 0.04 0.67 6.25 37.16 0.23 0.90 16 4 C 0.14 2.44 5.82 -4.04 -0.02 2.41 16 5 N -0.99 -20.95 2.79 -115.66 -0.32 -21.28 16 6 C 0.25 6.08 5.44 -5.19 -0.03 6.05 16 7 C -0.54 -13.76 9.38 -34.44 -0.32 -14.09 16 8 H 0.07 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -25.20 13.29 55.43 0.74 -24.46 16 11 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 S 2.80 59.46 6.32 -107.50 -0.68 58.78 16 16 O -0.98 -21.24 15.40 -63.05 -0.97 -22.21 16 17 O -0.98 -23.77 16.33 -57.17 -0.93 -24.71 16 18 N -1.01 -18.37 3.75 -111.29 -0.42 -18.79 16 19 C 0.13 2.12 6.94 -2.41 -0.02 2.10 16 20 C -0.15 -2.18 6.83 -24.46 -0.17 -2.35 16 21 C 0.08 1.06 3.43 -24.90 -0.09 0.98 16 22 H 0.07 0.82 7.82 -51.93 -0.41 0.41 16 23 O -0.38 -5.18 10.44 -35.23 -0.37 -5.55 16 24 C 0.03 0.31 10.85 101.05 1.10 1.41 16 25 C 0.13 1.97 6.83 -3.06 -0.02 1.95 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.97 7.80 -51.93 -0.41 0.57 16 31 H 0.09 1.60 8.13 -51.93 -0.42 1.17 16 32 H 0.08 1.28 7.34 -51.93 -0.38 0.90 16 33 H 0.05 1.33 6.99 -51.93 -0.36 0.96 16 34 H 0.04 0.91 7.77 -51.93 -0.40 0.51 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.09 1.77 8.14 -51.93 -0.42 1.34 16 38 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.04 0.33 8.11 -51.93 -0.42 -0.09 16 43 H 0.07 1.18 8.06 -51.93 -0.42 0.76 16 44 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 374.63 15.07 5.65 5.65 Total: -1.00 -33.10 374.63 -8.51 -41.61 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -7.42 Total: 0.34 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 1.68 Total: 2.52 kcal Atomic # 7 Polarization: -64.52 SS G_CDS: 0.00 Total: -64.53 kcal Atomic # 8 Polarization: -57.12 SS G_CDS: -2.72 Total: -59.84 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 59.46 SS G_CDS: -0.68 Total: 58.78 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.10 -8.51 -41.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337063249.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.881 kcal (2) G-P(sol) polarization free energy of solvation -33.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds