Wall clock time and date at job start Fri Apr 10 2020 18:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99999 * 2 1 4 4 C 1.53007 * 109.47161 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46952 * 65.60565 * 4 3 2 6 6 C 1.46510 * 119.99706 * 81.91418 * 5 4 3 7 7 C 1.50703 * 109.46716 * 84.99782 * 6 5 4 8 8 H 1.08001 * 119.99919 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99424 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00143 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99494 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47223 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46526 * 120.00394 * 11 9 7 14 14 H 1.48496 * 109.46952 * 240.00062 * 11 9 7 15 15 S 1.65597 * 120.00209 * 261.91813 * 5 4 3 16 16 O 1.42097 * 106.40334 * 18.08046 * 15 5 4 17 17 O 1.42104 * 106.40151 * 151.00746 * 15 5 4 18 18 N 1.65609 * 107.21358 * 264.53954 * 15 5 4 19 19 C 1.47418 * 125.64945 * 263.56131 * 18 15 5 20 20 C 1.55129 * 104.72270 * 155.82054 * 19 18 15 21 21 C 1.55157 * 101.48633 * 37.29326 * 20 19 18 22 22 H 1.09005 * 110.71730 * 82.69593 * 21 20 19 23 23 O 1.42894 * 110.87588 * 205.89881 * 21 20 19 24 24 C 1.42903 * 114.00562 * 263.61323 * 23 21 20 25 25 C 1.47027 * 125.64422 * 83.87416 * 18 15 5 26 26 H 1.08996 * 109.47221 * 60.00036 * 1 2 3 27 27 H 1.08999 * 109.47303 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46810 * 299.99858 * 1 2 3 29 29 H 1.09001 * 109.47199 * 60.00440 * 3 2 1 30 30 H 1.08997 * 109.46979 * 299.99798 * 3 2 1 31 31 H 1.08992 * 109.46984 * 185.60663 * 4 3 2 32 32 H 1.08994 * 109.46950 * 305.61200 * 4 3 2 33 33 H 1.08994 * 109.47058 * 204.99790 * 6 5 4 34 34 H 1.09005 * 109.46858 * 324.99955 * 6 5 4 35 35 H 0.97000 * 119.99272 * 180.02562 * 10 9 7 36 36 H 1.09002 * 110.36980 * 274.74920 * 19 18 15 37 37 H 1.09001 * 110.36675 * 37.07115 * 19 18 15 38 38 H 1.09001 * 111.19523 * 279.19188 * 20 19 18 39 39 H 1.09003 * 110.94016 * 155.28771 * 20 19 18 40 40 H 1.09002 * 109.46599 * 59.99320 * 24 23 21 41 41 H 1.08994 * 109.47814 * 179.97438 * 24 23 21 42 42 H 1.09004 * 109.46548 * 300.00178 * 24 23 21 43 43 H 1.08998 * 109.88170 * 300.43677 * 25 18 15 44 44 H 1.09004 * 109.88494 * 61.60163 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9767 0.5777 -1.2589 6 6 4.1177 1.4036 -2.4607 7 6 5.4767 2.0550 -2.4659 8 1 6.1664 1.8717 -1.6553 9 6 5.8397 2.8840 -3.5061 10 7 4.9999 3.1067 -4.4934 11 14 7.5240 3.6921 -3.5121 12 1 8.2735 3.2832 -2.2971 13 1 8.2728 3.2663 -4.7219 14 1 7.3646 5.1684 -3.5227 15 16 4.3160 -1.0419 -1.3227 16 8 3.6982 -1.6265 -0.1843 17 8 4.0431 -1.4569 -2.6541 18 7 5.9493 -1.2095 -1.1062 19 6 6.9486 -1.3490 -2.1810 20 6 8.2767 -0.8530 -1.5513 21 6 8.1510 -1.3908 -0.1014 22 1 8.4579 -2.4355 -0.0497 23 8 8.9173 -0.5952 0.8051 24 6 10.2145 -1.1234 1.0885 25 6 6.6421 -1.2501 0.1899 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.6887 1.8464 0.8900 30 1 1.6886 1.8463 -0.8900 31 1 3.9784 2.1755 0.0997 32 1 3.8507 0.5593 0.8345 33 1 4.0116 0.7773 -3.3464 34 1 3.3458 2.1732 -2.4653 35 1 5.2556 3.6897 -5.2253 36 1 7.0363 -2.3922 -2.4844 37 1 6.6778 -0.7265 -3.0339 38 1 8.3349 0.2355 -1.5605 39 1 9.1360 -1.2924 -2.0579 40 1 10.7863 -1.1981 0.1635 41 1 10.7324 -0.4620 1.7830 42 1 10.1143 -2.1129 1.5346 43 1 6.4551 -0.3275 0.7393 44 1 6.2949 -2.1058 0.7692 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337063249.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:30 Heat of formation + Delta-G solvation = -180.497351 kcal Electronic energy + Delta-G solvation = -27789.441428 eV Core-core repulsion = 23868.423649 eV Total energy + Delta-G solvation = -3921.017778 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.02184 -39.07595 -38.21529 -37.42558 -37.02122 -36.79945 -34.55260 -31.26640 -30.99882 -29.85127 -28.47599 -27.07425 -27.02851 -24.85190 -23.60533 -22.94352 -22.14331 -19.94393 -18.84123 -18.74549 -18.27103 -17.85279 -17.57745 -16.99683 -16.56206 -16.47684 -16.10503 -15.85716 -15.75911 -15.41230 -15.22182 -14.70618 -14.52613 -14.09794 -13.96077 -13.82348 -13.52735 -13.29319 -13.15915 -13.10670 -13.07327 -12.91045 -12.81686 -12.56316 -12.49700 -12.44432 -12.32530 -12.18149 -12.10489 -11.77589 -11.67996 -11.59142 -10.58714 -10.55405 -10.51170 -10.00000 -9.72624 -8.15753 -6.28902 -0.29912 1.41325 1.43923 1.55683 1.98639 2.43224 2.59676 2.83748 2.97101 3.15913 3.37665 3.56383 3.79270 4.04864 4.11287 4.20360 4.25405 4.34104 4.45961 4.53310 4.55405 4.56083 4.58309 4.59722 4.65644 4.76613 4.82877 4.86897 4.92364 4.93587 4.94018 4.98870 5.13697 5.22010 5.30088 5.40535 5.56523 5.77139 5.97037 6.11996 6.31173 6.33189 6.84206 7.41308 8.92569 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.009219 B = 0.007033 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3036.428476 B = 3980.022004 C = 5943.429990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.411 6.411 3 C 0.041 3.959 4 C 0.127 3.873 5 N -0.991 5.991 6 C 0.264 3.736 7 C -0.532 4.532 8 H 0.069 0.931 9 C 0.013 3.987 10 N -0.929 5.929 11 Si 0.955 3.045 12 H -0.260 1.260 13 H -0.281 1.281 14 H -0.282 1.282 15 S 2.812 3.188 16 O -0.983 6.983 17 O -1.017 7.017 18 N -1.016 6.016 19 C 0.118 3.882 20 C -0.144 4.144 21 C 0.090 3.910 22 H 0.108 0.892 23 O -0.401 6.401 24 C 0.024 3.976 25 C 0.118 3.882 26 H 0.040 0.960 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.043 0.957 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.012 0.988 34 H 0.020 0.980 35 H 0.265 0.735 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.109 0.891 40 H 0.050 0.950 41 H 0.094 0.906 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.484 -7.211 11.811 14.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.330 6.330 3 C -0.038 4.038 4 C 0.001 3.999 5 N -0.831 5.831 6 C 0.140 3.860 7 C -0.571 4.571 8 H 0.088 0.912 9 C -0.186 4.186 10 N -0.569 5.569 11 Si 0.780 3.220 12 H -0.184 1.184 13 H -0.207 1.207 14 H -0.208 1.208 15 S 2.822 3.178 16 O -0.967 6.967 17 O -1.002 7.002 18 N -0.858 5.858 19 C -0.007 4.007 20 C -0.183 4.183 21 C 0.031 3.969 22 H 0.126 0.874 23 O -0.319 6.319 24 C -0.072 4.072 25 C -0.008 4.008 26 H 0.058 0.942 27 H 0.108 0.892 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.120 0.880 32 H 0.107 0.893 33 H 0.030 0.970 34 H 0.039 0.961 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.127 0.873 40 H 0.069 0.931 41 H 0.113 0.887 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.774 -7.809 11.595 14.772 hybrid contribution 0.551 1.141 -0.741 1.468 sum 5.325 -6.668 10.854 13.807 Atomic orbital electron populations 1.22918 0.80180 1.03377 1.00821 1.88002 1.21065 1.28429 1.95529 1.23125 0.94402 0.84881 1.01344 1.21366 0.92626 1.01046 0.84850 1.57619 1.80567 1.27647 1.17276 1.18691 0.96556 0.89820 0.80903 1.21808 1.00659 1.27732 1.06947 0.91245 1.25759 1.00783 0.97091 0.94955 1.70079 1.37451 1.38307 1.11090 0.85548 0.79945 0.78068 0.78418 1.18350 1.20654 1.20791 1.00815 0.71956 0.73121 0.71920 1.93544 1.74423 1.76339 1.52402 1.93500 1.84237 1.82167 1.40248 1.58905 1.24408 1.88662 1.13799 1.22047 0.87566 1.01352 0.89701 1.23269 0.97058 1.01907 0.96081 1.23120 0.89760 0.95711 0.88359 0.87437 1.87906 1.29059 1.50326 1.64654 1.23016 0.83065 1.00028 1.01057 1.21732 0.92283 1.02643 0.84095 0.94183 0.89248 0.91928 0.89393 0.93846 0.87978 0.89300 0.97015 0.96146 0.92634 0.89596 0.92285 0.91688 0.87298 0.93111 0.88715 0.92265 0.91533 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 11.01 113.37 1.25 1.87 16 2 O -0.41 -14.91 9.52 -137.76 -1.31 -16.22 16 3 C 0.04 1.33 6.25 71.98 0.45 1.78 16 4 C 0.13 4.53 5.82 86.38 0.50 5.03 16 5 N -0.99 -43.10 2.79 -519.82 -1.45 -44.55 16 6 C 0.26 13.62 5.44 85.63 0.47 14.08 16 7 C -0.53 -27.90 9.38 25.60 0.24 -27.66 16 8 H 0.07 3.52 7.81 -2.91 -0.02 3.50 16 9 C 0.01 0.72 5.46 84.66 0.46 1.18 16 10 N -0.93 -53.89 13.29 21.45 0.28 -53.61 16 11 Si 0.95 42.16 29.54 68.60 2.03 44.18 16 12 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 13 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 14 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 15 S 2.81 121.40 6.32 -56.49 -0.36 121.04 16 16 O -0.98 -42.63 15.40 -122.38 -1.88 -44.52 16 17 O -1.02 -51.39 16.33 -128.00 -2.09 -53.48 16 18 N -1.02 -36.45 3.75 -506.01 -1.90 -38.35 16 19 C 0.12 3.89 6.94 86.93 0.60 4.49 16 20 C -0.14 -3.90 6.83 32.06 0.22 -3.68 16 21 C 0.09 2.15 3.43 31.78 0.11 2.26 16 22 H 0.11 1.89 7.82 -2.38 -0.02 1.87 16 23 O -0.40 -9.91 10.44 -148.98 -1.56 -11.46 16 24 C 0.02 0.38 10.85 113.37 1.23 1.61 16 25 C 0.12 3.44 6.83 86.73 0.59 4.03 16 26 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.04 1.51 7.80 -2.39 -0.02 1.50 16 31 H 0.10 3.42 8.13 -2.39 -0.02 3.40 16 32 H 0.09 2.93 7.34 -2.39 -0.02 2.91 16 33 H 0.01 0.69 6.99 -2.39 -0.02 0.68 16 34 H 0.02 1.10 7.77 -2.38 -0.02 1.08 16 35 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 36 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 39 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.06 0.72 8.11 -2.38 -0.02 0.70 16 43 H 0.07 2.03 8.06 -2.39 -0.02 2.01 16 44 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -72.92 374.63 -1.15 -74.07 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.97 Total: 17.88 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 6.12 Total: 5.01 kcal Atomic # 7 Polarization: -133.43 SS G_CDS: -3.06 Total: -136.50 kcal Atomic # 8 Polarization: -118.84 SS G_CDS: -6.84 Total: -125.68 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.18 kcal Atomic # 16 Polarization: 121.40 SS G_CDS: -0.36 Total: 121.04 kcal Total: -72.92 -1.15 -74.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337063249.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.432 kcal (2) G-P(sol) polarization free energy of solvation -72.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds