Wall clock time and date at job start Fri Apr 10 2020 18:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47195 * 64.99855 * 4 3 2 6 6 C 1.46511 * 119.99921 * 85.00299 * 5 4 3 7 7 C 1.50699 * 109.47263 * 84.99908 * 6 5 4 8 8 H 1.08001 * 119.99678 * 0.02562 * 7 6 5 9 9 C 1.37869 * 120.00132 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99974 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00222 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46993 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47099 * 119.99993 * 11 9 7 14 14 H 1.48498 * 109.47319 * 239.99985 * 11 9 7 15 15 S 1.65596 * 120.00497 * 265.00377 * 5 4 3 16 16 O 1.42106 * 104.28068 * 206.07158 * 15 5 4 17 17 O 1.42106 * 104.27503 * 333.92404 * 15 5 4 18 18 C 1.81394 * 104.45041 * 89.99795 * 15 5 4 19 19 C 1.53005 * 109.47333 * 180.02562 * 18 15 5 20 20 H 1.09005 * 109.50438 * 304.91035 * 19 18 15 21 21 C 1.53094 * 109.50906 * 184.78307 * 19 18 15 22 22 N 1.47019 * 109.25920 * 183.21426 * 21 19 18 23 23 C 1.47016 * 110.75018 * 58.61440 * 22 21 19 24 24 C 1.53097 * 109.25946 * 301.38411 * 23 22 21 25 25 O 1.43016 * 109.25812 * 56.85010 * 24 23 22 26 26 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 28 28 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 29 29 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 30 30 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 31 31 H 1.09001 * 109.47630 * 185.00204 * 4 3 2 32 32 H 1.09004 * 109.47346 * 305.00335 * 4 3 2 33 33 H 1.08998 * 109.46868 * 205.00526 * 6 5 4 34 34 H 1.09001 * 109.46826 * 324.99956 * 6 5 4 35 35 H 0.97004 * 120.00476 * 180.02562 * 10 9 7 36 36 H 1.08997 * 109.47300 * 300.00222 * 18 15 5 37 37 H 1.08998 * 109.47590 * 60.00248 * 18 15 5 38 38 H 1.09000 * 109.50811 * 303.15082 * 21 19 18 39 39 H 1.09003 * 109.50557 * 63.27961 * 21 19 18 40 40 H 1.00900 * 110.99967 * 182.38888 * 22 21 19 41 41 H 1.09000 * 109.50544 * 181.44636 * 23 22 21 42 42 H 1.09001 * 109.50146 * 61.32190 * 23 22 21 43 43 H 1.09001 * 109.50337 * 296.91799 * 24 23 22 44 44 H 1.08997 * 109.53879 * 176.80155 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1809 1.3890 -2.4462 7 6 5.5682 1.9770 -2.4181 8 1 6.2309 1.7579 -1.5939 9 6 5.9914 2.7944 -3.4444 10 7 5.1843 3.0616 -4.4478 11 14 7.7107 3.5238 -3.4092 12 1 8.4144 3.0736 -2.1814 13 1 8.4651 3.0711 -4.6057 14 1 7.6199 5.0060 -3.4130 15 16 4.2413 -1.0688 -1.3192 16 8 5.1895 -1.2274 -2.3658 17 8 4.5602 -1.4267 0.0186 18 6 2.6387 -1.7689 -1.8007 19 6 2.7553 -3.2914 -1.8966 20 1 3.5643 -3.5522 -2.5789 21 6 1.4385 -3.8732 -2.4176 22 7 1.5297 -5.3405 -2.4346 23 6 1.8131 -5.8604 -1.0890 24 6 3.1262 -5.2587 -0.5813 25 8 3.0300 -3.8319 -0.6013 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.6886 1.8464 -0.8900 30 1 1.6887 1.8463 0.8900 31 1 3.9786 2.1764 0.0890 32 1 3.8515 0.5681 0.8409 33 1 4.0654 0.7728 -3.3378 34 1 3.4456 2.1935 -2.4627 35 1 5.4821 3.6364 -5.1701 36 1 1.8892 -1.5086 -1.0533 37 1 2.3419 -1.3652 -2.7687 38 1 0.6215 -3.5669 -1.7643 39 1 1.2539 -3.5083 -3.4279 40 1 0.6882 -5.7507 -2.8109 41 1 1.9018 -6.9460 -1.1295 42 1 1.0020 -5.5858 -0.4145 43 1 3.9456 -5.5773 -1.2256 44 1 3.3119 -5.5967 0.4382 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722278481.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:40 Heat of formation + Delta-G solvation = -147.144441 kcal Electronic energy + Delta-G solvation = -27607.804048 eV Core-core repulsion = 23688.232561 eV Total energy + Delta-G solvation = -3919.571488 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.53215 -38.02889 -36.22137 -35.47370 -34.98783 -34.75069 -32.93452 -32.49849 -29.52297 -28.49570 -26.75231 -25.97351 -25.51666 -23.05029 -23.01040 -21.54328 -20.57037 -18.01746 -17.12287 -16.95723 -16.64636 -16.40970 -16.39695 -15.82069 -15.58291 -15.17704 -14.98538 -14.86176 -14.55136 -14.34737 -14.10601 -14.00112 -13.50980 -12.70602 -12.62552 -12.47576 -12.28713 -11.98211 -11.76465 -11.67348 -11.50555 -11.44328 -11.24724 -11.12943 -11.03305 -10.92828 -10.71699 -10.50499 -10.43876 -10.20255 -9.91350 -9.77287 -9.59396 -9.51851 -8.76441 -8.40451 -7.96459 -6.02112 -4.04802 1.07723 3.34426 3.42299 3.46558 3.52177 3.59179 3.83837 3.86816 4.48750 4.55892 4.72011 4.81485 4.91330 4.95460 5.00807 5.06606 5.20205 5.23962 5.31027 5.32765 5.41378 5.49502 5.52403 5.55765 5.57911 5.61726 5.64404 5.71266 5.81451 5.89003 6.24962 6.40356 6.55040 6.57048 6.98401 7.06570 7.18600 7.25791 7.45069 7.67289 7.96714 8.26466 8.98427 9.60110 11.06624 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015998 B = 0.004482 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.803030 B = 6245.159400 C = 7037.368269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.394 6.394 3 C 0.036 3.964 4 C 0.124 3.876 5 N -0.983 5.983 6 C 0.255 3.745 7 C -0.522 4.522 8 H 0.062 0.938 9 C 0.061 3.939 10 N -0.899 5.899 11 Si 0.896 3.104 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.285 1.285 15 S 2.618 3.382 16 O -0.947 6.947 17 O -0.959 6.959 18 C -0.646 4.646 19 C 0.106 3.894 20 H 0.077 0.923 21 C 0.036 3.964 22 N -0.690 5.690 23 C 0.018 3.982 24 C 0.059 3.941 25 O -0.372 6.372 26 H 0.080 0.920 27 H 0.040 0.960 28 H 0.042 0.958 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.037 0.963 34 H 0.033 0.967 35 H 0.262 0.738 36 H 0.162 0.838 37 H 0.137 0.863 38 H 0.044 0.956 39 H 0.090 0.910 40 H 0.346 0.654 41 H 0.086 0.914 42 H 0.041 0.959 43 H 0.062 0.938 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.320 -11.932 7.124 19.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.313 6.313 3 C -0.042 4.042 4 C -0.003 4.003 5 N -0.821 5.821 6 C 0.133 3.867 7 C -0.561 4.561 8 H 0.080 0.920 9 C -0.141 4.141 10 N -0.538 5.538 11 Si 0.724 3.276 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.211 1.211 15 S 2.709 3.291 16 O -0.937 6.937 17 O -0.949 6.949 18 C -0.772 4.772 19 C 0.046 3.954 20 H 0.095 0.905 21 C -0.094 4.094 22 N -0.322 5.322 23 C -0.111 4.111 24 C -0.018 4.018 25 O -0.291 6.291 26 H 0.098 0.902 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.120 0.880 32 H 0.108 0.892 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.179 0.821 37 H 0.155 0.845 38 H 0.063 0.937 39 H 0.108 0.892 40 H 0.164 0.836 41 H 0.104 0.896 42 H 0.059 0.941 43 H 0.080 0.920 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.728 -12.306 7.087 18.418 hybrid contribution -1.123 0.791 -0.221 1.392 sum -12.851 -11.515 6.865 18.571 Atomic orbital electron populations 1.22696 0.81600 1.02251 1.00055 1.87754 1.19488 1.28880 1.95203 1.23304 0.95888 0.84263 1.00765 1.21259 0.90276 1.01495 0.87265 1.57456 1.82445 1.24228 1.17974 1.19058 0.97059 0.90332 0.80261 1.21541 0.99172 1.28401 1.06986 0.91978 1.24920 0.97633 0.96387 0.95157 1.69925 1.35919 1.37737 1.10244 0.86471 0.84456 0.78409 0.78301 1.19590 1.20857 1.21078 1.04742 0.76254 0.73645 0.74446 1.93615 1.56010 1.85234 1.58825 1.93496 1.82322 1.82898 1.36221 1.31020 1.29752 1.02486 1.13941 1.21650 0.97469 0.90492 0.85745 0.90549 1.22544 0.97091 0.87767 1.02030 1.60524 1.42781 1.06074 1.22812 1.22647 0.98375 1.00328 0.89760 1.22716 0.96115 0.80782 1.02221 1.88162 1.92027 1.20355 1.28539 0.90189 0.94088 0.93986 0.92178 0.92562 0.88031 0.89177 0.94514 0.94854 0.92850 0.82063 0.84502 0.93736 0.89196 0.83564 0.89561 0.94099 0.92009 0.87961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.86 101.05 1.10 1.41 16 2 O -0.39 -5.56 7.12 -35.23 -0.25 -5.82 16 3 C 0.04 0.51 6.28 37.16 0.23 0.74 16 4 C 0.12 2.17 6.04 -4.04 -0.02 2.14 16 5 N -0.98 -20.71 2.65 -115.66 -0.31 -21.01 16 6 C 0.25 6.32 5.01 -5.19 -0.03 6.30 16 7 C -0.52 -14.69 9.38 -34.44 -0.32 -15.01 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.90 -26.13 13.29 55.43 0.74 -25.39 16 11 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 S 2.62 55.17 5.10 -107.50 -0.55 54.62 16 16 O -0.95 -23.71 16.99 -57.54 -0.98 -24.69 16 17 O -0.96 -21.62 16.06 -59.90 -0.96 -22.58 16 18 C -0.65 -10.36 5.53 37.16 0.21 -10.15 16 19 C 0.11 1.60 2.80 -26.68 -0.07 1.53 16 20 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 21 C 0.04 0.42 6.05 -3.71 -0.02 0.40 16 22 N -0.69 -7.13 6.92 -113.49 -0.79 -7.92 16 23 C 0.02 0.18 6.76 -3.71 -0.03 0.15 16 24 C 0.06 0.70 7.01 37.21 0.26 0.96 16 25 O -0.37 -5.94 9.80 -36.17 -0.35 -6.30 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.10 1.73 8.11 -51.93 -0.42 1.31 16 32 H 0.09 1.57 6.82 -51.93 -0.35 1.22 16 33 H 0.04 0.97 7.61 -51.93 -0.40 0.57 16 34 H 0.03 0.82 8.05 -51.93 -0.42 0.40 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.16 2.44 4.65 -51.93 -0.24 2.20 16 37 H 0.14 1.95 8.14 -51.93 -0.42 1.53 16 38 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.35 2.70 8.90 -39.29 -0.35 2.35 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 366.00 15.07 5.52 5.52 Total: -1.00 -35.52 366.00 -8.97 -44.48 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -7.22 Total: 2.00 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: 1.20 Total: -9.90 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.36 Total: -54.32 kcal Atomic # 8 Polarization: -56.84 SS G_CDS: -2.54 Total: -59.38 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 55.17 SS G_CDS: -0.55 Total: 54.62 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.52 -8.97 -44.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722278481.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.660 kcal (2) G-P(sol) polarization free energy of solvation -35.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds