Wall clock time and date at job start Fri Apr 10 2020 18:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00085 * 2 1 4 4 C 1.52998 * 109.47431 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.87236 * 305.44031 * 4 3 2 6 6 C 1.54321 * 110.01517 * 184.33847 * 4 3 2 7 7 C 1.55150 * 102.94502 * 218.31764 * 6 4 3 8 8 C 1.54693 * 101.67533 * 35.33700 * 7 6 4 9 9 N 1.47021 * 109.87861 * 66.45335 * 4 3 2 10 10 C 1.34777 * 125.64831 * 298.47735 * 9 4 3 11 11 O 1.21359 * 120.00374 * 359.97438 * 10 9 4 12 12 C 1.49314 * 120.00044 * 180.02562 * 10 9 4 13 13 O 1.21408 * 119.99834 * 359.97438 * 12 10 9 14 14 N 1.34773 * 120.00432 * 180.02562 * 12 10 9 15 15 C 1.40289 * 120.00449 * 179.97438 * 14 12 10 16 16 C 1.40727 * 126.09682 * 359.97252 * 15 14 12 17 17 N 1.30874 * 108.37237 * 179.77757 * 16 15 14 18 18 N 1.40059 * 108.43766 * 0.38281 * 17 16 15 19 19 C 1.37295 * 126.05604 * 179.88019 * 18 17 16 20 20 H 1.07997 * 120.00344 * 179.69126 * 19 18 17 21 21 C 1.39012 * 119.99781 * 359.41092 * 19 18 17 22 22 N 1.31281 * 120.00057 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99760 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47298 * 60.00271 * 23 21 19 25 25 H 1.48508 * 109.47224 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47384 * 300.00275 * 23 21 19 27 27 C 1.35785 * 126.10220 * 179.97438 * 15 14 12 28 28 H 1.09000 * 109.47206 * 60.00098 * 1 2 3 29 29 H 1.09001 * 109.46939 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46907 * 300.00102 * 1 2 3 31 31 H 1.09000 * 109.46969 * 59.99706 * 3 2 1 32 32 H 1.09000 * 109.47074 * 299.99825 * 3 2 1 33 33 H 1.09004 * 110.71654 * 336.68173 * 6 4 3 34 34 H 1.09000 * 110.71872 * 99.94890 * 6 4 3 35 35 H 1.09001 * 111.00807 * 153.57211 * 7 6 4 36 36 H 1.08993 * 111.00904 * 277.39321 * 7 6 4 37 37 H 1.09000 * 110.39432 * 204.36338 * 8 7 6 38 38 H 1.09002 * 110.23899 * 82.11273 * 8 7 6 39 39 H 0.96997 * 119.99363 * 359.97438 * 14 12 10 40 40 H 1.08003 * 125.81236 * 0.02908 * 16 15 14 41 41 H 0.97000 * 119.99476 * 179.97438 * 22 21 19 42 42 H 1.07999 * 126.24954 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8576 0.5631 0.8361 6 6 4.1761 2.5844 0.1103 7 6 5.4056 2.4785 -0.8300 8 6 4.8626 1.5645 -1.9537 9 7 3.9907 0.5944 -1.2665 10 6 3.6691 -0.6327 -1.7218 11 8 2.9442 -1.3524 -1.0665 12 6 4.2055 -1.1072 -3.0320 13 8 4.9310 -0.3874 -3.6874 14 7 3.8835 -2.3340 -3.4876 15 6 4.3870 -2.7796 -4.7189 16 6 5.2336 -2.0561 -5.5792 17 7 5.4925 -2.7997 -6.6245 18 7 4.8182 -4.0186 -6.4791 19 6 4.8369 -5.0637 -7.3692 20 1 4.2820 -5.9652 -7.1554 21 6 5.5654 -4.9593 -8.5485 22 7 6.2359 -3.8615 -8.8108 23 14 5.5904 -6.3810 -9.7599 24 1 4.2066 -6.6660 -10.2173 25 1 6.4330 -6.0209 -10.9286 26 1 6.1508 -7.5861 -9.0975 27 6 4.1445 -3.9860 -5.2931 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.4869 3.3524 -0.2409 34 1 4.4900 2.7856 1.1346 35 1 5.6842 3.4573 -1.2206 36 1 6.2474 2.0092 -0.3211 37 1 5.6827 1.0496 -2.4541 38 1 4.2873 2.1500 -2.6709 39 1 3.3035 -2.9089 -2.9641 40 1 5.6092 -1.0587 -5.4044 41 1 6.7446 -3.7889 -9.6336 42 1 3.5298 -4.7750 -4.8858 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746432027.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:02 Heat of formation + Delta-G solvation = -34.193664 kcal Electronic energy + Delta-G solvation = -27296.582376 eV Core-core repulsion = 23278.757601 eV Total energy + Delta-G solvation = -4017.824775 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.06340 -41.32551 -39.87220 -38.61294 -38.06559 -36.06263 -35.00604 -32.66490 -32.29050 -31.64996 -29.86920 -27.67093 -27.28103 -26.07743 -25.47011 -23.22350 -22.86120 -22.05493 -21.30717 -20.52775 -19.35526 -18.61955 -18.07843 -17.46839 -17.41239 -17.16430 -16.78306 -16.56550 -16.18608 -15.99109 -15.56950 -15.34095 -15.14543 -14.89329 -14.58870 -14.32810 -14.12300 -13.65323 -13.51136 -13.44429 -13.36437 -12.95316 -12.88469 -12.76838 -12.42372 -12.20952 -12.13199 -12.06909 -11.96283 -11.82431 -11.59450 -11.04980 -10.87461 -10.52077 -10.31550 -10.14033 -9.72341 -8.61504 -8.48870 -6.26604 0.39765 1.28905 1.31189 1.41632 1.56924 1.74053 2.09639 2.11805 2.50885 2.56456 2.86576 2.89587 3.07383 3.45909 3.68560 3.77689 3.99146 4.19986 4.22516 4.37203 4.39178 4.47288 4.52088 4.55033 4.56898 4.64805 4.86932 4.91918 4.94383 4.97175 4.98367 5.02857 5.13301 5.21505 5.27934 5.34202 5.38911 5.91084 6.14526 6.25858 6.36017 6.45330 6.67585 6.87103 7.12930 7.40926 7.62626 8.50221 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025081 B = 0.002711 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.137179 B =10326.373791 C =11222.143097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.389 6.389 3 C 0.045 3.955 4 C 0.130 3.870 5 H 0.079 0.921 6 C -0.111 4.111 7 C -0.125 4.125 8 C 0.089 3.911 9 N -0.589 5.589 10 C 0.524 3.476 11 O -0.505 6.505 12 C 0.486 3.514 13 O -0.537 6.537 14 N -0.586 5.586 15 C -0.055 4.055 16 C -0.048 4.048 17 N -0.307 5.307 18 N -0.163 5.163 19 C -0.355 4.355 20 H 0.141 0.859 21 C -0.004 4.004 22 N -0.821 5.821 23 Si 1.020 2.980 24 H -0.254 1.254 25 H -0.276 1.276 26 H -0.254 1.254 27 C -0.077 4.077 28 H 0.035 0.965 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.421 0.579 40 H 0.176 0.824 41 H 0.278 0.722 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.055 11.672 17.837 22.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.307 6.307 3 C -0.033 4.033 4 C 0.028 3.972 5 H 0.097 0.903 6 C -0.148 4.148 7 C -0.163 4.163 8 C -0.033 4.033 9 N -0.324 5.324 10 C 0.305 3.695 11 O -0.380 6.380 12 C 0.269 3.731 13 O -0.415 6.415 14 N -0.230 5.230 15 C -0.161 4.161 16 C -0.223 4.223 17 N -0.139 5.139 18 N 0.069 4.931 19 C -0.486 4.486 20 H 0.158 0.842 21 C -0.217 4.217 22 N -0.448 5.448 23 Si 0.839 3.161 24 H -0.178 1.178 25 H -0.201 1.201 26 H -0.178 1.178 27 C -0.228 4.228 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.064 0.936 33 H 0.115 0.885 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.258 0.742 40 H 0.193 0.807 41 H 0.088 0.912 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -6.100 11.587 16.448 21.024 hybrid contribution -0.827 -0.581 0.189 1.029 sum -6.928 11.006 16.638 21.117 Atomic orbital electron populations 1.22789 0.81047 1.02833 1.00159 1.88277 1.19921 1.27182 1.95346 1.23104 0.92998 0.85742 1.01432 1.22024 0.93006 0.96668 0.85516 0.90318 1.22673 0.96953 0.92557 1.02646 1.22807 0.97745 1.00609 0.95091 1.22713 0.94044 0.90486 0.96090 1.48340 1.48293 1.13593 1.22213 1.19353 0.81976 0.82424 0.85717 1.90805 1.35230 1.54113 1.57836 1.20370 0.82871 0.82352 0.87548 1.90584 1.37375 1.55100 1.58470 1.42097 1.47163 1.15623 1.18162 1.17313 1.11021 0.96345 0.91425 1.24233 1.03016 1.01403 0.93664 1.78143 1.20690 0.92841 1.22177 1.44826 1.26242 1.10311 1.11714 1.20620 1.33585 0.94639 0.99744 0.84189 1.26888 0.93925 1.00993 0.99861 1.70372 1.23153 1.27162 1.24127 0.84641 0.79538 0.76059 0.75900 1.17787 1.20097 1.17775 1.21971 1.09146 1.00119 0.91581 0.94605 0.90125 0.92506 0.89619 0.93557 0.88522 0.86806 0.87081 0.90244 0.90293 0.91195 0.74200 0.80714 0.91209 0.79707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 113.37 1.25 1.80 16 2 O -0.39 -10.15 7.37 -125.91 -0.93 -11.08 16 3 C 0.04 0.84 5.37 71.98 0.39 1.23 16 4 C 0.13 2.47 3.29 45.34 0.15 2.62 16 5 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 6 C -0.11 -1.11 6.48 31.78 0.21 -0.90 16 7 C -0.12 -1.59 7.07 31.91 0.23 -1.37 16 8 C 0.09 2.00 6.04 86.78 0.52 2.52 16 9 N -0.59 -15.48 3.07 -790.22 -2.42 -17.90 16 10 C 0.52 17.48 7.65 87.23 0.67 18.14 16 11 O -0.51 -18.09 13.75 19.80 0.27 -17.81 16 12 C 0.49 18.75 7.82 87.23 0.68 19.43 16 13 O -0.54 -22.56 10.92 -3.43 -0.04 -22.59 16 14 N -0.59 -23.18 5.45 -305.32 -1.66 -24.84 16 15 C -0.05 -2.62 6.90 37.83 0.26 -2.36 16 16 C -0.05 -2.60 10.85 85.44 0.93 -1.67 16 17 N -0.31 -18.47 10.39 -56.43 -0.59 -19.06 16 18 N -0.16 -9.14 3.73 -189.98 -0.71 -9.85 16 19 C -0.35 -18.91 10.25 84.02 0.86 -18.05 16 20 H 0.14 6.48 7.83 -2.91 -0.02 6.46 16 21 C 0.00 -0.23 5.50 84.96 0.47 0.23 16 22 N -0.82 -47.06 11.81 21.67 0.26 -46.80 16 23 Si 1.02 38.50 29.55 68.60 2.03 40.53 16 24 H -0.25 -8.98 7.11 99.48 0.71 -8.28 16 25 H -0.28 -10.27 7.11 99.48 0.71 -9.56 16 26 H -0.25 -8.98 7.11 99.48 0.71 -8.28 16 27 C -0.08 -3.71 11.50 83.41 0.96 -2.76 16 28 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.10 0.70 7.86 -2.39 -0.02 0.68 16 34 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 2.22 6.17 -2.39 -0.01 2.21 16 38 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.42 14.43 8.29 -92.71 -0.77 13.67 16 40 H 0.18 9.30 5.92 -2.91 -0.02 9.29 16 41 H 0.28 14.64 8.31 -92.71 -0.77 13.87 16 42 H 0.19 7.20 8.06 -2.91 -0.02 7.17 16 Total: -1.00 -76.81 350.94 4.06 -72.75 By element: Atomic # 1 Polarization: 37.52 SS G_CDS: 0.29 Total: 37.81 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: 7.56 Total: 18.86 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -5.13 Total: -118.46 kcal Atomic # 8 Polarization: -50.79 SS G_CDS: -0.69 Total: -51.49 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.53 kcal Total: -76.81 4.06 -72.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746432027.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.556 kcal (2) G-P(sol) polarization free energy of solvation -76.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds