Wall clock time and date at job start Fri Apr 10 2020 18:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00117 * 2 1 4 4 H 1.48496 * 109.47037 * 239.99940 * 3 2 1 5 5 H 1.48496 * 109.47179 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46789 * 120.00013 * 3 2 1 7 7 C 1.37874 * 119.99844 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00075 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99950 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47197 * 180.02562 * 9 7 2 11 11 C 1.34779 * 120.00146 * 179.97438 * 10 9 7 12 12 O 1.21274 * 119.99785 * 359.97438 * 11 10 9 13 13 C 1.50706 * 119.99761 * 179.72419 * 11 10 9 14 14 N 1.46896 * 109.46691 * 180.27751 * 13 11 10 15 15 C 1.47436 * 111.00511 * 69.86943 * 14 13 11 16 16 C 1.54325 * 107.23392 * 123.25773 * 15 14 13 17 17 C 1.55141 * 103.01730 * 22.28611 * 16 15 14 18 18 O 1.42901 * 110.99099 * 82.44053 * 17 16 15 19 19 C 1.50700 * 110.98804 * 206.21755 * 17 16 15 20 20 C 1.38249 * 119.97459 * 233.86450 * 19 17 16 21 21 C 1.38199 * 120.02169 * 179.77182 * 20 19 17 22 22 C 1.38452 * 119.97613 * 0.50503 * 21 20 19 23 23 F 1.35099 * 120.02399 * 179.77111 * 22 21 20 24 24 C 1.38454 * 119.95145 * 359.74558 * 22 21 20 25 25 C 1.38202 * 119.97362 * 0.02562 * 24 22 21 26 26 C 1.47849 * 110.99946 * 190.71639 * 14 13 11 27 27 H 0.97006 * 120.00122 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47203 * 59.99784 * 9 7 2 29 29 H 1.09008 * 109.47196 * 299.99717 * 9 7 2 30 30 H 0.97009 * 119.99945 * 359.97438 * 10 9 7 31 31 H 1.09004 * 109.47073 * 300.26857 * 13 11 10 32 32 H 1.08992 * 109.47248 * 60.27197 * 13 11 10 33 33 H 1.09000 * 109.89388 * 242.66191 * 15 14 13 34 34 H 1.09003 * 109.89044 * 3.85305 * 15 14 13 35 35 H 1.09000 * 110.70932 * 140.67048 * 16 15 14 36 36 H 1.09000 * 110.70308 * 263.72680 * 16 15 14 37 37 H 0.96699 * 113.99863 * 61.44935 * 18 17 16 38 38 H 1.07996 * 119.98503 * 0.02562 * 20 19 17 39 39 H 1.08006 * 120.00613 * 180.25259 * 21 20 19 40 40 H 1.07998 * 120.01635 * 179.97438 * 24 22 21 41 41 H 1.07997 * 119.98402 * 180.02562 * 25 24 22 42 42 H 1.08998 * 110.37153 * 332.46168 * 26 14 13 43 43 H 1.09003 * 110.37685 * 94.80207 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0017 10 7 2.2028 -3.6127 -0.0015 11 6 1.7535 -4.8834 -0.0019 12 8 0.5612 -5.1049 -0.0019 13 6 2.7329 -6.0288 -0.0079 14 7 1.9983 -7.3009 -0.0138 15 6 1.3233 -7.5154 -1.3069 16 6 1.8250 -8.8632 -1.8667 17 6 2.3221 -9.6051 -0.5981 18 8 1.2357 -10.2306 0.0878 19 6 3.3891 -10.6114 -0.9446 20 6 3.2491 -11.9294 -0.5517 21 6 4.2247 -12.8540 -0.8730 22 6 5.3475 -12.4577 -1.5795 23 9 6.3040 -13.3598 -1.8901 24 6 5.4891 -11.1364 -1.9680 25 6 4.5100 -10.2144 -1.6497 26 6 2.9079 -8.4392 0.2369 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5563 -0.8919 29 1 0.6239 -2.5575 0.8881 30 1 3.1566 -3.4355 -0.0010 31 1 3.3591 -5.9668 -0.8980 32 1 3.3599 -5.9754 0.8820 33 1 0.2439 -7.5537 -1.1600 34 1 1.5775 -6.7100 -1.9960 35 1 1.0102 -9.4115 -2.3394 36 1 2.6425 -8.7077 -2.5707 37 1 0.7754 -10.9019 -0.4342 38 1 2.3752 -12.2374 0.0029 39 1 4.1132 -13.8845 -0.5695 40 1 6.3647 -10.8260 -2.5188 41 1 4.6201 -9.1838 -1.9530 42 1 3.9166 -8.2003 -0.1003 43 1 2.9119 -8.6957 1.2963 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777738307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:31 Heat of formation + Delta-G solvation = -121.001845 kcal Electronic energy + Delta-G solvation = -26361.171715 eV Core-core repulsion = 22319.662694 eV Total energy + Delta-G solvation = -4041.509021 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -49.91021 -41.47639 -40.38589 -38.95472 -36.81617 -36.02454 -34.32766 -33.09454 -31.97877 -31.35714 -29.89512 -28.93606 -27.01193 -24.52492 -24.14594 -23.51097 -22.34559 -21.42848 -21.15663 -19.02000 -18.87635 -18.19357 -17.51194 -17.45721 -17.21097 -16.76787 -16.67527 -16.60019 -15.99857 -15.89978 -15.59109 -14.93725 -14.90733 -14.54544 -14.43834 -14.25205 -14.06851 -13.99556 -13.74084 -13.61567 -13.50861 -13.19781 -12.92133 -12.86765 -12.67039 -12.62244 -12.23163 -12.05611 -11.97656 -11.80311 -11.50048 -11.08134 -10.78054 -10.68267 -10.08688 -9.78729 -9.60061 -9.20476 -8.28011 -6.44887 0.06477 0.25627 1.43493 1.47789 1.55933 1.83918 2.27912 2.46156 2.52559 2.99675 3.06528 3.21461 3.27803 3.53049 3.58273 3.68173 3.83381 3.95735 4.02627 4.19995 4.28495 4.29909 4.31542 4.41324 4.55246 4.62624 4.79558 4.83342 4.91969 4.96792 4.97083 5.12908 5.15048 5.19516 5.25140 5.25798 5.47551 5.50596 5.70922 5.86239 5.87517 5.94691 6.01670 6.66493 6.82780 6.98541 7.24873 7.57216 8.83922 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028041 B = 0.002113 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.286909 B =13248.655718 C =13939.299725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.269 3.731 10 N -0.711 5.711 11 C 0.493 3.507 12 O -0.587 6.587 13 C 0.043 3.957 14 N -0.532 5.532 15 C 0.058 3.942 16 C -0.154 4.154 17 C 0.175 3.825 18 O -0.551 6.551 19 C -0.115 4.115 20 C -0.080 4.080 21 C -0.154 4.154 22 C 0.078 3.922 23 F -0.150 7.150 24 C -0.153 4.153 25 C -0.082 4.082 26 C 0.061 3.939 27 H 0.268 0.732 28 H -0.015 1.015 29 H -0.017 1.017 30 H 0.408 0.592 31 H 0.094 0.906 32 H 0.126 0.874 33 H 0.052 0.948 34 H 0.045 0.955 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.391 0.609 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.088 0.912 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.706 -26.193 -4.886 29.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.593 4.593 8 H 0.103 0.897 9 C 0.146 3.854 10 N -0.362 5.362 11 C 0.279 3.721 12 O -0.467 6.467 13 C -0.088 4.088 14 N -0.257 5.257 15 C -0.069 4.069 16 C -0.192 4.192 17 C 0.133 3.867 18 O -0.359 6.359 19 C -0.116 4.116 20 C -0.098 4.098 21 C -0.172 4.172 22 C 0.059 3.941 23 F -0.129 7.129 24 C -0.172 4.172 25 C -0.100 4.100 26 C -0.066 4.066 27 H 0.077 0.923 28 H 0.003 0.997 29 H 0.001 0.999 30 H 0.244 0.756 31 H 0.112 0.888 32 H 0.144 0.856 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.241 0.759 38 H 0.170 0.830 39 H 0.167 0.833 40 H 0.169 0.831 41 H 0.167 0.833 42 H 0.106 0.894 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.546 -25.820 -4.025 28.987 hybrid contribution 0.611 0.562 -1.012 1.309 sum 13.157 -25.258 -5.037 28.921 Atomic orbital electron populations 1.70142 1.08317 1.28588 1.49971 1.26101 0.95792 1.04009 0.93917 0.85194 0.77879 0.76524 0.79533 1.18527 1.21233 1.18652 1.21600 0.94334 0.90549 1.52851 0.89686 1.18477 0.88692 0.84418 0.93802 1.46181 1.11123 1.05489 1.73423 1.21397 0.90040 0.84765 0.75857 1.90644 1.19352 1.85334 1.51342 1.22182 0.93840 0.87396 1.05387 1.63087 1.28695 1.00888 1.33018 1.22603 0.99255 0.96583 0.88506 1.23552 1.02859 0.95505 0.97294 1.20764 0.85076 0.89739 0.91159 1.86619 1.46740 1.58077 1.44484 1.20303 0.96537 0.94908 0.99845 1.21047 0.99335 0.91641 0.97728 1.21349 0.93448 1.02078 1.00369 1.18051 0.87880 0.87508 1.00687 1.91483 1.62821 1.67194 1.91401 1.21332 1.01736 0.91319 1.02766 1.21010 0.92045 1.00450 0.96457 1.23174 0.94850 0.87216 1.01377 0.92299 0.99680 0.99902 0.75607 0.88787 0.85610 0.92948 0.93646 0.88883 0.88406 0.75854 0.83045 0.83252 0.83147 0.83336 0.89408 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.63 13.29 21.45 0.28 -56.35 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.99 42.21 29.54 68.60 2.03 44.23 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 5 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 7 C -0.56 -30.20 9.28 25.60 0.24 -29.96 16 8 H 0.09 4.12 7.60 -2.91 -0.02 4.10 16 9 C 0.27 14.90 5.43 85.63 0.46 15.37 16 10 N -0.71 -29.81 5.55 -466.78 -2.59 -32.40 16 11 C 0.49 19.71 7.48 87.66 0.66 20.36 16 12 O -0.59 -29.75 15.55 -3.01 -0.05 -29.80 16 13 C 0.04 1.11 5.03 85.56 0.43 1.54 16 14 N -0.53 -14.40 4.85 -890.09 -4.32 -18.72 16 15 C 0.06 1.53 5.65 86.65 0.49 2.02 16 16 C -0.15 -2.52 6.07 31.78 0.19 -2.33 16 17 C 0.17 2.80 1.15 -10.15 -0.01 2.79 16 18 O -0.55 -9.86 12.10 -148.98 -1.80 -11.66 16 19 C -0.11 -1.47 5.00 -19.86 -0.10 -1.57 16 20 C -0.08 -0.94 9.29 22.26 0.21 -0.73 16 21 C -0.15 -1.89 10.03 22.31 0.22 -1.67 16 22 C 0.08 1.13 7.30 22.37 0.16 1.30 16 23 F -0.15 -2.56 17.27 44.97 0.78 -1.78 16 24 C -0.15 -1.86 10.03 22.31 0.22 -1.63 16 25 C -0.08 -0.92 8.28 22.26 0.18 -0.74 16 26 C 0.06 1.16 5.84 86.77 0.51 1.66 16 27 H 0.27 15.26 8.31 -92.70 -0.77 14.48 16 28 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 29 H -0.02 -1.07 8.14 -2.38 -0.02 -1.09 16 30 H 0.41 13.75 8.32 -92.70 -0.77 12.98 16 31 H 0.09 1.83 7.96 -2.38 -0.02 1.81 16 32 H 0.13 2.62 8.07 -2.39 -0.02 2.60 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.05 1.26 7.31 -2.39 -0.02 1.24 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.10 1.23 6.81 -2.39 -0.02 1.22 16 37 H 0.39 3.79 8.47 -74.06 -0.63 3.16 16 38 H 0.15 1.35 6.81 -2.91 -0.02 1.33 16 39 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 40 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 41 H 0.15 1.19 7.01 -2.91 -0.02 1.17 16 42 H 0.09 1.20 6.71 -2.39 -0.02 1.18 16 43 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -78.45 360.97 -1.68 -80.13 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -0.34 Total: 19.41 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 4.33 Total: 6.94 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -6.62 Total: -107.47 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -1.85 Total: -41.46 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.78 Total: -1.78 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -78.45 -1.68 -80.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777738307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.871 kcal (2) G-P(sol) polarization free energy of solvation -78.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds