Wall clock time and date at job start Fri Apr 10 2020 18:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46504 * 119.99639 * 2 1 4 4 C 1.34768 * 120.00108 * 180.02562 * 2 1 3 5 5 O 1.21283 * 120.00032 * 359.97438 * 4 2 1 6 6 C 1.50701 * 119.99852 * 180.27669 * 4 2 1 7 7 N 1.46505 * 109.46905 * 179.72408 * 6 4 2 8 8 C 1.34783 * 126.58362 * 125.00031 * 7 6 4 9 9 C 1.36677 * 106.83524 * 179.97438 * 8 7 6 10 10 C 1.47386 * 125.78091 * 180.02562 * 9 8 7 11 11 O 1.21509 * 119.99804 * 0.02562 * 10 9 8 12 12 O 1.34748 * 119.99700 * 180.02562 * 10 9 8 13 13 C 1.45202 * 116.99904 * 177.70996 * 12 10 9 14 14 C 1.50700 * 112.84745 * 65.17732 * 13 12 10 15 15 H 1.08005 * 119.99536 * 242.52278 * 14 13 12 16 16 C 1.37879 * 120.00333 * 62.52465 * 14 13 12 17 17 N 1.31506 * 119.99991 * 353.76566 * 16 14 13 18 18 Si 1.86799 * 119.99988 * 173.77205 * 16 14 13 19 19 H 1.48506 * 109.47030 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47465 * 119.99630 * 18 16 14 21 21 H 1.48498 * 109.47011 * 240.00077 * 18 16 14 22 22 C 1.53777 * 113.61358 * 293.97882 * 13 12 10 23 23 C 1.53957 * 87.01763 * 220.04986 * 22 13 12 24 24 C 1.53778 * 87.11494 * 25.36172 * 23 22 13 25 25 N 1.34446 * 108.43437 * 359.97438 * 9 8 7 26 26 N 1.28762 * 109.51088 * 359.71447 * 25 9 8 27 27 H 1.08994 * 109.47302 * 270.00335 * 1 2 3 28 28 H 1.09004 * 109.47340 * 30.00167 * 1 2 3 29 29 H 1.09003 * 109.47085 * 150.00068 * 1 2 3 30 30 H 1.09001 * 109.46698 * 269.99529 * 3 2 1 31 31 H 1.08994 * 109.47399 * 30.00067 * 3 2 1 32 32 H 1.08999 * 109.46875 * 150.00268 * 3 2 1 33 33 H 1.09000 * 109.47225 * 299.71740 * 6 4 2 34 34 H 1.08998 * 109.47384 * 59.72653 * 6 4 2 35 35 H 1.07998 * 126.58918 * 0.02562 * 8 7 6 36 36 H 0.97001 * 120.00473 * 185.01438 * 17 16 14 37 37 H 1.09000 * 113.61288 * 334.56517 * 22 13 12 38 38 H 1.08999 * 113.61243 * 105.47009 * 22 13 12 39 39 H 1.09002 * 113.53214 * 270.81015 * 23 22 13 40 40 H 1.08997 * 113.74481 * 139.94910 * 23 22 13 41 41 H 1.08996 * 113.61726 * 220.09539 * 24 23 22 42 42 H 1.08999 * 113.69080 * 89.19829 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1671 -0.0005 5 8 1.5325 -2.2175 -0.0005 6 6 3.6459 -1.1671 0.0058 7 7 4.1342 -2.5483 0.0105 8 6 4.9909 -3.1005 -0.8714 9 6 5.1689 -4.4007 -0.4895 10 6 6.0284 -5.3879 -1.1668 11 8 6.6565 -5.0687 -2.1568 12 8 6.1176 -6.6444 -0.6882 13 6 6.9426 -7.5772 -1.4350 14 6 8.4017 -7.2001 -1.4319 15 1 8.8998 -6.9619 -2.3601 16 6 9.1007 -7.1593 -0.2441 17 7 8.4689 -7.3286 0.8968 18 14 10.9450 -6.8633 -0.2554 19 1 11.4124 -6.7053 -1.6562 20 1 11.2532 -5.6298 0.5118 21 1 11.6358 -8.0202 0.3688 22 6 6.3932 -7.9018 -2.8341 23 6 6.8216 -9.3580 -2.5764 24 6 6.6863 -9.0503 -1.0758 25 7 4.4278 -4.6262 0.6094 26 7 3.8060 -3.5475 0.9376 27 1 -0.3633 0.0001 1.0276 28 1 -0.3634 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 2.3791 1.5834 -1.0277 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1385 0.5138 33 1 4.0129 -0.6551 -0.8837 34 1 4.0055 -0.6515 0.8963 35 1 5.4496 -2.6096 -1.7170 36 1 8.9462 -7.2278 1.7352 37 1 5.3143 -7.7729 -2.9202 38 1 6.9440 -7.4201 -3.6420 39 1 7.8440 -9.5724 -2.8877 40 1 6.1057 -10.0965 -2.9371 41 1 7.4733 -9.4944 -0.4663 42 1 5.6882 -9.2357 -0.6790 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788135291.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:45 Heat of formation + Delta-G solvation = 23.937051 kcal Electronic energy + Delta-G solvation = -27220.133429 eV Core-core repulsion = 23204.829391 eV Total energy + Delta-G solvation = -4015.304038 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 4.08 seconds Orbital eigenvalues (eV) -41.90853 -40.15118 -38.99495 -36.88097 -36.04448 -34.54818 -34.02074 -32.21793 -30.71985 -29.69761 -28.00697 -26.24545 -25.98973 -24.47675 -23.94113 -22.46990 -22.14232 -20.44165 -19.52861 -18.47223 -17.84602 -17.58594 -16.70796 -16.47693 -16.11935 -15.44638 -15.30772 -15.09150 -14.70877 -14.35557 -14.23494 -14.01176 -13.79785 -13.55974 -13.26729 -13.17875 -13.09300 -12.73080 -12.50481 -12.20087 -11.72868 -11.49203 -11.04473 -10.96903 -10.87222 -10.84952 -10.68020 -10.37674 -10.19899 -9.96763 -9.84023 -9.72840 -9.43442 -9.22870 -8.90614 -8.72706 -8.50320 -8.41880 -6.01814 -4.15193 1.33940 1.93101 2.09224 2.29125 2.56233 3.28909 3.37445 3.42920 3.74972 3.93046 4.12323 4.24556 4.39819 4.41230 4.55527 4.57339 4.74158 4.83061 5.05981 5.12783 5.16771 5.24950 5.39967 5.50357 5.59586 5.83460 5.85892 5.90111 6.06136 6.33910 6.40185 6.55373 6.61537 6.73892 6.75433 6.99808 7.19838 7.38388 7.62619 7.64103 7.84593 7.96999 8.31310 8.41445 8.88443 9.26145 9.54659 11.01884 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020577 B = 0.003010 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.386304 B = 9300.314556 C = 9949.195917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.623 5.623 3 C 0.072 3.928 4 C 0.499 3.501 5 O -0.500 6.500 6 C 0.110 3.890 7 N -0.366 5.366 8 C 0.081 3.919 9 C -0.060 4.060 10 C 0.550 3.450 11 O -0.510 6.510 12 O -0.321 6.321 13 C 0.238 3.762 14 C -0.516 4.516 15 H 0.069 0.931 16 C 0.075 3.925 17 N -0.854 5.854 18 Si 0.892 3.108 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.282 1.282 22 C -0.159 4.159 23 C -0.131 4.131 24 C -0.107 4.107 25 N -0.177 5.177 26 N -0.048 5.048 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.205 0.795 36 H 0.263 0.737 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.839 18.865 -2.490 22.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.359 5.359 3 C -0.071 4.071 4 C 0.284 3.716 5 O -0.373 6.373 6 C -0.016 4.016 7 N -0.152 5.152 8 C -0.073 4.073 9 C -0.197 4.197 10 C 0.391 3.609 11 O -0.399 6.399 12 O -0.235 6.235 13 C 0.205 3.795 14 C -0.553 4.553 15 H 0.087 0.913 16 C -0.132 4.132 17 N -0.490 5.490 18 Si 0.719 3.281 19 H -0.194 1.194 20 H -0.210 1.210 21 H -0.208 1.208 22 C -0.197 4.197 23 C -0.169 4.169 24 C -0.145 4.145 25 N -0.052 5.052 26 N -0.029 5.029 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.150 0.850 34 H 0.144 0.856 35 H 0.221 0.779 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.747 17.911 -1.353 22.025 hybrid contribution 1.564 0.980 -0.745 1.990 sum -11.183 18.890 -2.097 22.053 Atomic orbital electron populations 1.21675 0.78323 1.03371 1.02233 1.47679 1.07509 1.05929 1.74781 1.21933 0.97425 0.85359 1.02428 1.20454 0.89504 0.84053 0.77574 1.90857 1.69212 1.30508 1.46696 1.21678 0.93168 0.79658 1.07071 1.49835 1.32717 1.11046 1.21593 1.23214 0.93712 0.94176 0.96152 1.21022 1.06228 0.93798 0.98625 1.19096 0.78073 0.82576 0.81150 1.90748 1.43072 1.80365 1.25735 1.86662 1.63920 1.18354 1.54516 1.21278 0.89107 0.83996 0.85149 1.20974 0.91783 1.48483 0.94039 0.91267 1.25105 0.98476 0.94014 0.95570 1.70065 1.35992 1.45763 0.97182 0.86535 0.85411 0.77777 0.78360 1.19449 1.20996 1.20755 1.23564 0.99028 0.96630 1.00481 1.22564 1.00679 0.95734 0.97916 1.22895 1.00487 0.96217 0.94900 1.74851 1.03646 1.16736 1.09947 1.82115 1.19330 0.90125 1.11283 0.92391 0.90958 0.90307 0.91898 0.90334 0.90729 0.85036 0.85649 0.77879 0.92745 0.92177 0.91752 0.90237 0.92989 0.90715 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.53 10.44 59.85 0.62 1.16 16 2 N -0.62 -4.27 3.27 -189.51 -0.62 -4.89 16 3 C 0.07 0.17 10.25 59.85 0.61 0.79 16 4 C 0.50 5.29 7.71 -10.99 -0.08 5.20 16 5 O -0.50 -8.06 15.32 5.55 0.09 -7.97 16 6 C 0.11 0.92 5.57 -5.19 -0.03 0.89 16 7 N -0.37 -5.35 3.40 -62.22 -0.21 -5.57 16 8 C 0.08 1.29 11.27 -16.82 -0.19 1.10 16 9 C -0.06 -1.29 7.02 -83.56 -0.59 -1.88 16 10 C 0.55 13.78 7.52 34.45 0.26 14.04 16 11 O -0.51 -13.05 15.36 -19.27 -0.30 -13.35 16 12 O -0.32 -8.79 9.76 -40.62 -0.40 -9.19 16 13 C 0.24 6.28 0.47 -90.96 -0.04 6.23 16 14 C -0.52 -14.52 7.08 -34.44 -0.24 -14.77 16 15 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 16 C 0.07 2.11 5.30 -17.82 -0.09 2.01 16 17 N -0.85 -24.99 12.79 55.43 0.71 -24.28 16 18 Si 0.89 21.57 29.55 -169.99 -5.02 16.55 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 22 C -0.16 -3.65 6.57 -25.83 -0.17 -3.82 16 23 C -0.13 -2.74 7.81 -25.83 -0.20 -2.94 16 24 C -0.11 -2.58 7.29 -25.92 -0.19 -2.76 16 25 N -0.18 -3.97 12.39 32.84 0.41 -3.57 16 26 N -0.05 -0.93 12.90 60.35 0.78 -0.15 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.25 8.07 -51.93 -0.42 -0.17 16 29 H 0.08 0.65 7.42 -51.93 -0.39 0.27 16 30 H 0.06 0.08 8.14 -51.93 -0.42 -0.34 16 31 H 0.08 0.10 8.07 -51.93 -0.42 -0.32 16 32 H 0.07 0.08 6.43 -51.93 -0.33 -0.25 16 33 H 0.13 0.52 8.05 -51.93 -0.42 0.10 16 34 H 0.13 0.69 7.40 -51.93 -0.38 0.31 16 35 H 0.20 2.34 8.06 -52.49 -0.42 1.92 16 36 H 0.26 7.31 8.32 -40.82 -0.34 6.97 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.06 1.48 8.08 -51.93 -0.42 1.07 16 39 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.07 1.90 7.98 -51.93 -0.41 1.48 16 42 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 364.91 15.07 5.50 5.50 Total: -1.00 -39.25 364.91 -5.10 -44.35 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -5.70 Total: -2.67 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -0.33 Total: 5.24 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 1.06 Total: -38.45 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.61 Total: -30.51 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -39.25 -5.10 -44.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788135291.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.286 kcal (2) G-P(sol) polarization free energy of solvation -39.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.08 seconds