Wall clock time and date at job start Fri Apr 10 2020 18:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46504 * 119.99639 * 2 1 4 4 C 1.34768 * 120.00108 * 180.02562 * 2 1 3 5 5 O 1.21283 * 120.00032 * 359.97438 * 4 2 1 6 6 C 1.50701 * 119.99852 * 180.27669 * 4 2 1 7 7 N 1.46505 * 109.46905 * 179.72408 * 6 4 2 8 8 C 1.34783 * 126.58362 * 125.00031 * 7 6 4 9 9 C 1.36677 * 106.83524 * 179.97438 * 8 7 6 10 10 C 1.47386 * 125.78091 * 180.02562 * 9 8 7 11 11 O 1.21509 * 119.99804 * 0.02562 * 10 9 8 12 12 O 1.34748 * 119.99700 * 180.02562 * 10 9 8 13 13 C 1.45202 * 116.99904 * 177.70996 * 12 10 9 14 14 C 1.50700 * 112.84745 * 65.17732 * 13 12 10 15 15 H 1.08005 * 119.99536 * 242.52278 * 14 13 12 16 16 C 1.37879 * 120.00333 * 62.52465 * 14 13 12 17 17 N 1.31506 * 119.99991 * 353.76566 * 16 14 13 18 18 Si 1.86799 * 119.99988 * 173.77205 * 16 14 13 19 19 H 1.48506 * 109.47030 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47465 * 119.99630 * 18 16 14 21 21 H 1.48498 * 109.47011 * 240.00077 * 18 16 14 22 22 C 1.53777 * 113.61358 * 293.97882 * 13 12 10 23 23 C 1.53957 * 87.01763 * 220.04986 * 22 13 12 24 24 C 1.53778 * 87.11494 * 25.36172 * 23 22 13 25 25 N 1.34446 * 108.43437 * 359.97438 * 9 8 7 26 26 N 1.28762 * 109.51088 * 359.71447 * 25 9 8 27 27 H 1.08994 * 109.47302 * 270.00335 * 1 2 3 28 28 H 1.09004 * 109.47340 * 30.00167 * 1 2 3 29 29 H 1.09003 * 109.47085 * 150.00068 * 1 2 3 30 30 H 1.09001 * 109.46698 * 269.99529 * 3 2 1 31 31 H 1.08994 * 109.47399 * 30.00067 * 3 2 1 32 32 H 1.08999 * 109.46875 * 150.00268 * 3 2 1 33 33 H 1.09000 * 109.47225 * 299.71740 * 6 4 2 34 34 H 1.08998 * 109.47384 * 59.72653 * 6 4 2 35 35 H 1.07998 * 126.58918 * 0.02562 * 8 7 6 36 36 H 0.97001 * 120.00473 * 185.01438 * 17 16 14 37 37 H 1.09000 * 113.61288 * 334.56517 * 22 13 12 38 38 H 1.08999 * 113.61243 * 105.47009 * 22 13 12 39 39 H 1.09002 * 113.53214 * 270.81015 * 23 22 13 40 40 H 1.08997 * 113.74481 * 139.94910 * 23 22 13 41 41 H 1.08996 * 113.61726 * 220.09539 * 24 23 22 42 42 H 1.08999 * 113.69080 * 89.19829 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1671 -0.0005 5 8 1.5325 -2.2175 -0.0005 6 6 3.6459 -1.1671 0.0058 7 7 4.1342 -2.5483 0.0105 8 6 4.9909 -3.1005 -0.8714 9 6 5.1689 -4.4007 -0.4895 10 6 6.0284 -5.3879 -1.1668 11 8 6.6565 -5.0687 -2.1568 12 8 6.1176 -6.6444 -0.6882 13 6 6.9426 -7.5772 -1.4350 14 6 8.4017 -7.2001 -1.4319 15 1 8.8998 -6.9619 -2.3601 16 6 9.1007 -7.1593 -0.2441 17 7 8.4689 -7.3286 0.8968 18 14 10.9450 -6.8633 -0.2554 19 1 11.4124 -6.7053 -1.6562 20 1 11.2532 -5.6298 0.5118 21 1 11.6358 -8.0202 0.3688 22 6 6.3932 -7.9018 -2.8341 23 6 6.8216 -9.3580 -2.5764 24 6 6.6863 -9.0503 -1.0758 25 7 4.4278 -4.6262 0.6094 26 7 3.8060 -3.5475 0.9376 27 1 -0.3633 0.0001 1.0276 28 1 -0.3634 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 2.3791 1.5834 -1.0277 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1385 0.5138 33 1 4.0129 -0.6551 -0.8837 34 1 4.0055 -0.6515 0.8963 35 1 5.4496 -2.6096 -1.7170 36 1 8.9462 -7.2278 1.7352 37 1 5.3143 -7.7729 -2.9202 38 1 6.9440 -7.4201 -3.6420 39 1 7.8440 -9.5724 -2.8877 40 1 6.1057 -10.0965 -2.9371 41 1 7.4733 -9.4944 -0.4663 42 1 5.6882 -9.2357 -0.6790 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788135291.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:41 Heat of formation + Delta-G solvation = -5.147039 kcal Electronic energy + Delta-G solvation = -27221.394609 eV Core-core repulsion = 23204.829391 eV Total energy + Delta-G solvation = -4016.565218 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -43.26294 -41.03002 -40.80369 -38.74502 -36.70729 -36.04969 -35.62772 -34.34315 -32.10295 -30.58909 -28.51128 -28.17350 -26.74232 -26.35453 -25.67365 -24.14497 -23.39688 -21.83666 -20.56550 -20.42263 -19.09937 -18.49051 -18.32096 -17.44706 -17.06462 -16.93229 -16.89947 -16.62509 -16.47844 -15.88561 -15.63498 -15.49060 -15.00344 -14.68357 -14.48545 -14.15837 -13.74069 -13.49544 -13.45109 -13.36945 -13.11013 -12.94424 -12.89170 -12.87945 -12.78725 -12.31447 -12.22317 -12.06321 -11.81946 -11.76367 -11.63474 -11.32034 -10.95511 -10.76812 -10.54167 -10.43818 -10.30042 -9.77814 -8.13708 -6.34202 0.07330 0.65780 0.92793 1.36278 1.37654 1.39858 1.52761 1.92415 2.18392 2.33855 2.41047 3.11925 3.21309 3.30150 3.56866 3.87693 3.94529 3.94854 4.02688 4.10186 4.25568 4.31644 4.37257 4.39318 4.49292 4.53470 4.79388 4.79915 4.87970 4.90045 4.95517 4.98036 5.18023 5.27962 5.39865 5.42661 5.43624 5.66097 5.77169 5.99036 6.16623 6.37647 6.71927 6.89096 6.95258 7.30424 7.44014 8.89789 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020577 B = 0.003010 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.386304 B = 9300.314556 C = 9949.195917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.613 5.613 3 C 0.060 3.940 4 C 0.491 3.509 5 O -0.572 6.572 6 C 0.098 3.902 7 N -0.346 5.346 8 C 0.121 3.879 9 C -0.108 4.108 10 C 0.543 3.457 11 O -0.527 6.527 12 O -0.346 6.346 13 C 0.212 3.788 14 C -0.527 4.527 15 H 0.057 0.943 16 C 0.028 3.972 17 N -0.887 5.887 18 Si 0.955 3.045 19 H -0.265 1.265 20 H -0.282 1.282 21 H -0.273 1.273 22 C -0.152 4.152 23 C -0.109 4.109 24 C -0.110 4.110 25 N -0.222 5.222 26 N -0.069 5.069 27 H 0.058 0.942 28 H 0.106 0.894 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.189 0.811 34 H 0.163 0.837 35 H 0.253 0.747 36 H 0.262 0.738 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.052 0.948 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.373 22.002 -3.676 25.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.347 5.347 3 C -0.081 4.081 4 C 0.277 3.723 5 O -0.450 6.450 6 C -0.025 4.025 7 N -0.131 5.131 8 C -0.036 4.036 9 C -0.245 4.245 10 C 0.386 3.614 11 O -0.418 6.418 12 O -0.261 6.261 13 C 0.178 3.822 14 C -0.564 4.564 15 H 0.076 0.924 16 C -0.175 4.175 17 N -0.524 5.524 18 Si 0.780 3.220 19 H -0.189 1.189 20 H -0.208 1.208 21 H -0.198 1.198 22 C -0.189 4.189 23 C -0.146 4.146 24 C -0.148 4.148 25 N -0.097 5.097 26 N -0.050 5.050 27 H 0.076 0.924 28 H 0.124 0.876 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.206 0.794 34 H 0.180 0.820 35 H 0.269 0.731 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.108 0.892 41 H 0.071 0.929 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.306 21.135 -2.526 24.587 hybrid contribution 1.281 0.262 -0.385 1.363 sum -11.025 21.397 -2.911 24.246 Atomic orbital electron populations 1.21762 0.78324 1.03603 1.02360 1.47841 1.07877 1.06515 1.72458 1.22325 0.98094 0.83336 1.04321 1.20879 0.90405 0.84089 0.76899 1.90845 1.70584 1.33092 1.50494 1.22467 0.91831 0.76523 1.11630 1.50156 1.30997 1.12379 1.19543 1.23788 0.91822 0.92046 0.95905 1.20906 1.08095 0.95404 1.00099 1.19598 0.78193 0.82396 0.81178 1.90697 1.44144 1.80485 1.26438 1.86632 1.64207 1.19852 1.55404 1.21577 0.88727 0.84663 0.87244 1.21114 0.93067 1.48583 0.93659 0.92433 1.25845 1.02725 0.93793 0.95122 1.70194 1.37602 1.46984 0.97624 0.85560 0.80170 0.77816 0.78487 1.18881 1.20788 1.19821 1.23475 0.99229 0.97903 0.98319 1.22487 1.01839 0.95330 0.94929 1.22891 0.99771 0.95240 0.96928 1.74810 1.04934 1.18721 1.11223 1.81977 1.19490 0.90697 1.12864 0.92384 0.87593 0.93134 0.89888 0.88760 0.88747 0.79383 0.81959 0.73106 0.92859 0.91455 0.92330 0.89993 0.89198 0.92944 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 10.44 127.77 1.33 2.23 16 2 N -0.61 -6.69 3.27 -871.89 -2.85 -9.54 16 3 C 0.06 0.01 10.25 127.77 1.31 1.31 16 4 C 0.49 9.43 7.71 87.66 0.68 10.11 16 5 O -0.57 -18.69 15.32 -3.04 -0.05 -18.74 16 6 C 0.10 1.23 5.57 85.63 0.48 1.71 16 7 N -0.35 -9.39 3.40 -350.78 -1.19 -10.58 16 8 C 0.12 3.55 11.27 83.87 0.95 4.50 16 9 C -0.11 -4.69 7.02 40.79 0.29 -4.40 16 10 C 0.54 27.94 7.52 70.23 0.53 28.47 16 11 O -0.53 -27.31 15.36 19.81 0.30 -27.01 16 12 O -0.35 -19.74 9.76 -56.59 -0.55 -20.29 16 13 C 0.21 11.40 0.47 -11.01 -0.01 11.40 16 14 C -0.53 -30.28 7.08 25.60 0.18 -30.10 16 15 H 0.06 3.35 7.81 -2.91 -0.02 3.33 16 16 C 0.03 1.62 5.30 84.66 0.45 2.07 16 17 N -0.89 -53.42 12.79 21.45 0.27 -53.15 16 18 Si 0.96 44.76 29.55 68.60 2.03 46.79 16 19 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 22 C -0.15 -6.95 6.57 31.18 0.20 -6.75 16 23 C -0.11 -4.42 7.81 31.18 0.24 -4.17 16 24 C -0.11 -5.41 7.29 31.12 0.23 -5.18 16 25 N -0.22 -10.35 12.39 -50.03 -0.62 -10.97 16 26 N -0.07 -2.73 12.90 37.02 0.48 -2.25 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.11 0.43 8.07 -2.39 -0.02 0.41 16 29 H 0.05 0.86 7.42 -2.39 -0.02 0.85 16 30 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 31 H 0.09 -0.21 8.07 -2.39 -0.02 -0.23 16 32 H 0.09 -0.33 6.43 -2.39 -0.02 -0.35 16 33 H 0.19 0.25 8.05 -2.39 -0.02 0.23 16 34 H 0.16 0.95 7.40 -2.39 -0.02 0.93 16 35 H 0.25 4.68 8.06 -2.91 -0.02 4.65 16 36 H 0.26 15.01 8.32 -92.71 -0.77 14.24 16 37 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 38 H 0.06 2.71 8.08 -2.39 -0.02 2.69 16 39 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 40 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 41 H 0.05 2.75 7.98 -2.39 -0.02 2.73 16 42 H 0.06 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -93.53 364.91 5.71 -87.82 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 1.04 Total: 6.73 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 6.86 Total: 11.19 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -3.92 Total: -86.49 kcal Atomic # 8 Polarization: -65.74 SS G_CDS: -0.29 Total: -66.04 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -93.53 5.71 -87.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788135291.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.670 kcal (2) G-P(sol) polarization free energy of solvation -93.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds