Wall clock time and date at job start Fri Apr 10 2020 18:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00242 * 2 1 4 4 H 1.48500 * 109.47095 * 270.00320 * 3 2 1 5 5 H 1.48502 * 109.46772 * 29.99872 * 3 2 1 6 6 H 1.48499 * 109.47476 * 150.00118 * 3 2 1 7 7 C 1.37876 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99764 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00141 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.46860 * 300.00057 * 9 7 2 11 11 O 1.42891 * 109.47018 * 60.00320 * 9 7 2 12 12 C 1.53002 * 109.47023 * 180.02562 * 9 7 2 13 13 N 1.46893 * 109.46891 * 179.79000 * 12 9 7 14 14 C 1.46903 * 111.00447 * 283.89270 * 13 12 9 15 15 C 1.53235 * 109.34127 * 172.74649 * 14 13 12 16 16 N 1.47088 * 108.52045 * 53.83097 * 15 14 13 17 17 C 1.34776 * 120.88064 * 128.83689 * 16 15 14 18 18 O 1.21543 * 120.00044 * 185.84624 * 17 16 15 19 19 C 1.47857 * 119.99839 * 5.84386 * 17 16 15 20 20 C 1.39595 * 120.13255 * 33.50488 * 19 17 16 21 21 C 1.37942 * 119.90775 * 179.73861 * 20 19 17 22 22 C 1.38348 * 120.16966 * 0.50616 * 21 20 19 23 23 C 1.38546 * 120.26646 * 359.77032 * 22 21 20 24 24 F 1.35102 * 119.95214 * 179.97438 * 23 22 21 25 25 C 1.38212 * 120.09376 * 359.97309 * 23 22 21 26 26 C 1.47077 * 118.23556 * 308.81171 * 16 15 14 27 27 C 1.46904 * 110.99750 * 159.59210 * 13 12 9 28 28 H 0.97006 * 120.00041 * 359.97438 * 1 2 3 29 29 H 0.96698 * 114.00392 * 59.99545 * 11 9 7 30 30 H 1.08999 * 109.47060 * 59.78905 * 12 9 7 31 31 H 1.08998 * 109.47309 * 299.79563 * 12 9 7 32 32 H 1.08993 * 109.48867 * 52.78594 * 14 13 12 33 33 H 1.08997 * 109.49017 * 292.70803 * 14 13 12 34 34 H 1.08996 * 109.62833 * 173.53833 * 15 14 13 35 35 H 1.08996 * 109.62761 * 294.12224 * 15 14 13 36 36 H 1.08002 * 120.04889 * 359.97438 * 20 19 17 37 37 H 1.07994 * 119.91319 * 180.25149 * 21 20 19 38 38 H 1.08001 * 119.86476 * 179.74180 * 22 21 20 39 39 H 1.08008 * 120.08269 * 179.97438 * 25 23 22 40 40 H 1.08995 * 109.63259 * 291.47609 * 26 16 15 41 41 H 1.09009 * 109.78531 * 170.98913 * 26 16 15 42 42 H 1.09002 * 109.49210 * 307.21163 * 27 13 12 43 43 H 1.08995 * 109.49609 * 67.29835 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8897 11 8 0.4291 -2.5746 -1.1670 12 6 2.2452 -3.6621 -0.0005 13 7 1.5107 -4.9342 0.0045 14 6 0.9660 -5.2224 1.3381 15 6 0.0602 -6.4559 1.2605 16 7 0.8205 -7.5562 0.6482 17 6 0.8827 -8.7663 1.2383 18 8 1.6002 -9.6317 0.7760 19 6 0.0783 -9.0411 2.4480 20 6 -1.1756 -8.4481 2.6055 21 6 -1.9245 -8.7120 3.7334 22 6 -1.4317 -9.5546 4.7138 23 6 -0.1857 -10.1425 4.5675 24 9 0.2896 -10.9639 5.5291 25 6 0.5717 -9.8899 3.4394 26 6 1.5106 -7.3008 -0.6252 27 6 2.3593 -6.0339 -0.4734 28 1 -0.4850 0.8401 0.0004 29 1 0.9208 -2.5290 -1.9983 30 1 2.8743 -3.6022 0.8875 31 1 2.8695 -3.6065 -0.8923 32 1 0.3870 -4.3674 1.6869 33 1 1.7846 -5.4152 2.0314 34 1 -0.2548 -6.7425 2.2639 35 1 -0.8139 -6.2305 0.6496 36 1 -1.5605 -7.7865 1.8434 37 1 -2.8963 -8.2564 3.8534 38 1 -2.0205 -9.7545 5.5969 39 1 1.5432 -10.3480 3.3257 40 1 0.7759 -7.1566 -1.4174 41 1 2.1541 -8.1453 -0.8720 42 1 2.7908 -5.7675 -1.4383 43 1 3.1585 -6.2155 0.2452 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809574359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:33 Heat of formation + Delta-G solvation = -78.394706 kcal Electronic energy + Delta-G solvation = -27088.238541 eV Core-core repulsion = 23048.577103 eV Total energy + Delta-G solvation = -4039.661437 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.21888 -40.77424 -38.78297 -37.84765 -35.82249 -34.07657 -32.11884 -32.02504 -31.32684 -30.41206 -29.08420 -26.84444 -24.70334 -24.00100 -23.50753 -22.82108 -21.33734 -20.35586 -19.54179 -18.02982 -17.12423 -16.87091 -16.72595 -16.15339 -15.90861 -15.81261 -15.34537 -15.05630 -14.79551 -14.56467 -14.37971 -14.20821 -13.90595 -13.74235 -13.61242 -13.43363 -12.96782 -12.77255 -12.49718 -12.28621 -11.95619 -11.72924 -11.45450 -11.23117 -11.14835 -11.13007 -10.95420 -10.74441 -10.52726 -10.09088 -10.03303 -9.50623 -9.15044 -9.05909 -8.76799 -8.61191 -8.17899 -7.72378 -6.04382 -4.22876 0.42373 0.77466 2.48151 2.75249 3.24589 3.29988 3.32044 3.34211 3.84494 4.14111 4.20654 4.39913 4.40748 4.59396 4.62845 4.90019 4.95865 5.05668 5.16081 5.23533 5.28260 5.33095 5.41490 5.50389 5.60258 5.65546 5.73195 5.79908 5.86759 5.89382 5.96284 6.00150 6.09804 6.22260 6.37931 6.43446 6.49353 6.74400 7.20472 7.37570 7.47500 7.72468 7.83091 7.94319 8.15882 8.80981 9.42667 9.58770 10.99543 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019732 B = 0.002703 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.646886 B =10357.845896 C =11045.637298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.081 3.919 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.576 4.576 8 H 0.054 0.946 9 C 0.241 3.759 10 H 0.053 0.947 11 O -0.553 6.553 12 C 0.030 3.970 13 N -0.525 5.525 14 C 0.042 3.958 15 C 0.097 3.903 16 N -0.601 5.601 17 C 0.559 3.441 18 O -0.539 6.539 19 C -0.099 4.099 20 C -0.102 4.102 21 C -0.096 4.096 22 C -0.132 4.132 23 C 0.092 3.908 24 F -0.137 7.137 25 C -0.101 4.101 26 C 0.118 3.882 27 C 0.040 3.960 28 H 0.260 0.740 29 H 0.342 0.658 30 H 0.029 0.971 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.030 0.970 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.144 0.856 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.972 -17.577 6.390 18.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.614 4.614 8 H 0.072 0.928 9 C 0.183 3.817 10 H 0.070 0.930 11 O -0.355 6.355 12 C -0.097 4.097 13 N -0.249 5.249 14 C -0.087 4.087 15 C -0.025 4.025 16 N -0.333 5.333 17 C 0.347 3.653 18 O -0.417 6.417 19 C -0.102 4.102 20 C -0.121 4.121 21 C -0.114 4.114 22 C -0.151 4.151 23 C 0.072 3.928 24 F -0.115 7.115 25 C -0.121 4.121 26 C -0.004 4.004 27 C -0.089 4.089 28 H 0.070 0.930 29 H 0.185 0.815 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.049 0.951 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.164 0.836 37 H 0.160 0.840 38 H 0.158 0.842 39 H 0.162 0.838 40 H 0.098 0.902 41 H 0.110 0.890 42 H 0.104 0.896 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -3.603 -17.948 6.309 19.363 hybrid contribution 1.808 0.922 0.452 2.079 sum -1.795 -17.026 6.761 18.407 Atomic orbital electron populations 1.70075 1.05879 1.26417 1.46957 1.25008 0.94685 0.99045 0.93822 0.86690 0.79950 0.83577 0.78240 1.20506 1.21112 1.19918 1.21654 0.93129 0.91657 1.54988 0.92813 1.19257 0.87711 0.88293 0.86464 0.92955 1.86556 1.37716 1.96280 1.14944 1.23137 0.97188 0.89550 0.99796 1.62001 1.36585 1.02269 1.24077 1.22479 0.98005 0.97687 0.90517 1.22482 0.95214 0.85771 0.99030 1.48085 1.51055 1.10547 1.23625 1.18202 0.81558 0.82212 0.83305 1.90774 1.40354 1.45445 1.65164 1.19739 0.95896 0.99246 0.95351 1.21752 0.93437 0.98194 0.98710 1.21038 1.00246 0.97138 0.92952 1.21374 0.94623 0.98114 1.01024 1.17531 0.93998 0.93813 0.87415 1.91525 1.88361 1.69908 1.61735 1.21156 1.01057 0.97874 0.91972 1.21787 0.96476 0.97620 0.84513 1.22489 0.94180 0.91337 1.00871 0.92985 0.81518 0.95252 0.91810 0.88530 0.95140 0.88627 0.89640 0.83606 0.83982 0.84225 0.83811 0.90245 0.88964 0.89615 0.95193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.58 12.84 55.43 0.71 -23.87 16 2 C 0.08 2.19 5.40 -17.82 -0.10 2.10 16 3 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.58 -15.21 8.76 -34.44 -0.30 -15.51 16 8 H 0.05 1.39 7.74 -52.48 -0.41 0.99 16 9 C 0.24 5.75 2.89 -27.88 -0.08 5.67 16 10 H 0.05 1.37 6.83 -51.93 -0.35 1.02 16 11 O -0.55 -13.66 12.60 -35.23 -0.44 -14.10 16 12 C 0.03 0.59 4.61 -3.83 -0.02 0.57 16 13 N -0.52 -8.63 4.42 -234.32 -1.04 -9.67 16 14 C 0.04 0.62 5.45 -3.70 -0.02 0.60 16 15 C 0.10 1.15 4.87 -3.60 -0.02 1.13 16 16 N -0.60 -7.72 3.01 -173.57 -0.52 -8.24 16 17 C 0.56 7.60 7.41 -12.32 -0.09 7.51 16 18 O -0.54 -8.92 16.26 5.33 0.09 -8.84 16 19 C -0.10 -1.11 5.34 -104.98 -0.56 -1.67 16 20 C -0.10 -0.90 7.39 -39.18 -0.29 -1.19 16 21 C -0.10 -0.68 10.03 -39.65 -0.40 -1.08 16 22 C -0.13 -1.03 10.02 -39.43 -0.40 -1.42 16 23 C 0.09 0.90 7.29 -39.48 -0.29 0.61 16 24 F -0.14 -1.44 17.26 2.25 0.04 -1.40 16 25 C -0.10 -1.10 9.58 -39.11 -0.37 -1.48 16 26 C 0.12 1.52 6.61 -3.60 -0.02 1.50 16 27 C 0.04 0.56 5.59 -3.70 -0.02 0.54 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 29 H 0.34 7.61 9.04 45.56 0.41 8.02 16 30 H 0.03 0.57 7.99 -51.93 -0.42 0.16 16 31 H 0.06 1.20 7.76 -51.93 -0.40 0.79 16 32 H 0.10 1.56 6.71 -51.93 -0.35 1.21 16 33 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.10 0.94 4.57 -51.93 -0.24 0.70 16 35 H 0.09 0.99 7.96 -51.93 -0.41 0.58 16 36 H 0.15 1.12 5.82 -52.49 -0.31 0.81 16 37 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 38 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 39 H 0.14 1.59 7.98 -52.48 -0.42 1.17 16 40 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.09 1.19 7.05 -51.92 -0.37 0.82 16 42 H 0.09 1.12 7.89 -51.93 -0.41 0.71 16 43 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 354.69 15.07 5.35 5.35 Total: -1.00 -31.74 354.69 -8.73 -40.47 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -4.92 Total: 6.81 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -2.97 Total: -2.11 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: -0.85 Total: -41.78 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.36 Total: -22.94 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.74 -8.73 -40.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809574359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.923 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds