Wall clock time and date at job start Fri Apr 10 2020 18:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00242 * 2 1 4 4 H 1.48500 * 109.47095 * 270.00320 * 3 2 1 5 5 H 1.48502 * 109.46772 * 29.99872 * 3 2 1 6 6 H 1.48499 * 109.47476 * 150.00118 * 3 2 1 7 7 C 1.37876 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99764 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00141 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.46860 * 300.00057 * 9 7 2 11 11 O 1.42891 * 109.47018 * 60.00320 * 9 7 2 12 12 C 1.53002 * 109.47023 * 180.02562 * 9 7 2 13 13 N 1.46893 * 109.46891 * 179.79000 * 12 9 7 14 14 C 1.46903 * 111.00447 * 283.89270 * 13 12 9 15 15 C 1.53235 * 109.34127 * 172.74649 * 14 13 12 16 16 N 1.47088 * 108.52045 * 53.83097 * 15 14 13 17 17 C 1.34776 * 120.88064 * 128.83689 * 16 15 14 18 18 O 1.21543 * 120.00044 * 185.84624 * 17 16 15 19 19 C 1.47857 * 119.99839 * 5.84386 * 17 16 15 20 20 C 1.39595 * 120.13255 * 33.50488 * 19 17 16 21 21 C 1.37942 * 119.90775 * 179.73861 * 20 19 17 22 22 C 1.38348 * 120.16966 * 0.50616 * 21 20 19 23 23 C 1.38546 * 120.26646 * 359.77032 * 22 21 20 24 24 F 1.35102 * 119.95214 * 179.97438 * 23 22 21 25 25 C 1.38212 * 120.09376 * 359.97309 * 23 22 21 26 26 C 1.47077 * 118.23556 * 308.81171 * 16 15 14 27 27 C 1.46904 * 110.99750 * 159.59210 * 13 12 9 28 28 H 0.97006 * 120.00041 * 359.97438 * 1 2 3 29 29 H 0.96698 * 114.00392 * 59.99545 * 11 9 7 30 30 H 1.08999 * 109.47060 * 59.78905 * 12 9 7 31 31 H 1.08998 * 109.47309 * 299.79563 * 12 9 7 32 32 H 1.08993 * 109.48867 * 52.78594 * 14 13 12 33 33 H 1.08997 * 109.49017 * 292.70803 * 14 13 12 34 34 H 1.08996 * 109.62833 * 173.53833 * 15 14 13 35 35 H 1.08996 * 109.62761 * 294.12224 * 15 14 13 36 36 H 1.08002 * 120.04889 * 359.97438 * 20 19 17 37 37 H 1.07994 * 119.91319 * 180.25149 * 21 20 19 38 38 H 1.08001 * 119.86476 * 179.74180 * 22 21 20 39 39 H 1.08008 * 120.08269 * 179.97438 * 25 23 22 40 40 H 1.08995 * 109.63259 * 291.47609 * 26 16 15 41 41 H 1.09009 * 109.78531 * 170.98913 * 26 16 15 42 42 H 1.09002 * 109.49210 * 307.21163 * 27 13 12 43 43 H 1.08995 * 109.49609 * 67.29835 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8897 11 8 0.4291 -2.5746 -1.1670 12 6 2.2452 -3.6621 -0.0005 13 7 1.5107 -4.9342 0.0045 14 6 0.9660 -5.2224 1.3381 15 6 0.0602 -6.4559 1.2605 16 7 0.8205 -7.5562 0.6482 17 6 0.8827 -8.7663 1.2383 18 8 1.6002 -9.6317 0.7760 19 6 0.0783 -9.0411 2.4480 20 6 -1.1756 -8.4481 2.6055 21 6 -1.9245 -8.7120 3.7334 22 6 -1.4317 -9.5546 4.7138 23 6 -0.1857 -10.1425 4.5675 24 9 0.2896 -10.9639 5.5291 25 6 0.5717 -9.8899 3.4394 26 6 1.5106 -7.3008 -0.6252 27 6 2.3593 -6.0339 -0.4734 28 1 -0.4850 0.8401 0.0004 29 1 0.9208 -2.5290 -1.9983 30 1 2.8743 -3.6022 0.8875 31 1 2.8695 -3.6065 -0.8923 32 1 0.3870 -4.3674 1.6869 33 1 1.7846 -5.4152 2.0314 34 1 -0.2548 -6.7425 2.2639 35 1 -0.8139 -6.2305 0.6496 36 1 -1.5605 -7.7865 1.8434 37 1 -2.8963 -8.2564 3.8534 38 1 -2.0205 -9.7545 5.5969 39 1 1.5432 -10.3480 3.3257 40 1 0.7759 -7.1566 -1.4174 41 1 2.1541 -8.1453 -0.8720 42 1 2.7908 -5.7675 -1.4383 43 1 3.1585 -6.2155 0.2452 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809574359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:28 Heat of formation + Delta-G solvation = -100.804710 kcal Electronic energy + Delta-G solvation = -27089.210311 eV Core-core repulsion = 23048.577103 eV Total energy + Delta-G solvation = -4040.633208 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -49.98692 -41.75766 -39.76125 -38.98169 -37.47027 -35.44891 -34.16463 -32.96920 -32.12644 -31.31203 -30.63503 -28.35596 -26.09314 -25.09346 -24.68370 -23.59474 -22.53452 -21.92928 -20.55223 -19.15693 -18.76889 -17.88108 -17.48029 -17.05191 -16.81141 -16.69967 -16.63536 -16.44783 -16.38990 -16.21782 -15.60383 -15.31374 -15.17939 -14.96461 -14.75631 -14.52557 -14.17626 -14.05935 -13.51491 -13.25076 -13.12285 -12.92853 -12.85085 -12.77946 -12.61140 -12.50705 -12.31776 -12.20664 -12.00574 -11.86141 -11.09276 -10.99249 -10.67175 -10.25571 -10.13849 -9.83501 -9.76428 -9.12914 -8.10284 -6.35314 -0.32728 0.07144 1.41972 1.43231 1.52859 1.52983 1.77480 2.40067 2.52984 2.96037 3.08155 3.16289 3.33912 3.72210 3.79045 3.92908 3.98143 4.01300 4.07435 4.19925 4.23435 4.26079 4.39275 4.45246 4.51645 4.64083 4.69468 4.72103 4.77538 4.83757 4.92413 4.98513 5.02821 5.05911 5.12958 5.21347 5.34188 5.63900 5.73944 5.78444 5.95337 6.16927 6.21137 6.26529 6.77679 6.90466 7.38963 7.68495 8.93553 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019732 B = 0.002703 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.646886 B =10357.845896 C =11045.637298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.030 3.970 3 Si 0.954 3.046 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.589 4.589 8 H 0.055 0.945 9 C 0.243 3.757 10 H 0.024 0.976 11 O -0.567 6.567 12 C 0.048 3.952 13 N -0.532 5.532 14 C 0.041 3.959 15 C 0.107 3.893 16 N -0.601 5.601 17 C 0.558 3.442 18 O -0.577 6.577 19 C -0.118 4.118 20 C -0.100 4.100 21 C -0.084 4.084 22 C -0.121 4.121 23 C 0.078 3.922 24 F -0.144 7.144 25 C -0.116 4.116 26 C 0.121 3.879 27 C 0.045 3.955 28 H 0.261 0.739 29 H 0.351 0.649 30 H 0.024 0.976 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.028 0.972 34 H 0.119 0.881 35 H 0.094 0.906 36 H 0.159 0.841 37 H 0.179 0.821 38 H 0.168 0.832 39 H 0.130 0.870 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.888 -17.528 6.930 19.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.173 4.173 3 Si 0.779 3.221 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.627 4.627 8 H 0.073 0.927 9 C 0.185 3.815 10 H 0.042 0.958 11 O -0.370 6.370 12 C -0.080 4.080 13 N -0.256 5.256 14 C -0.088 4.088 15 C -0.015 4.015 16 N -0.332 5.332 17 C 0.348 3.652 18 O -0.458 6.458 19 C -0.121 4.121 20 C -0.118 4.118 21 C -0.101 4.101 22 C -0.139 4.139 23 C 0.059 3.941 24 F -0.123 7.123 25 C -0.135 4.135 26 C -0.001 4.001 27 C -0.084 4.084 28 H 0.070 0.930 29 H 0.196 0.804 30 H 0.042 0.958 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.046 0.954 34 H 0.137 0.863 35 H 0.112 0.888 36 H 0.177 0.823 37 H 0.196 0.804 38 H 0.185 0.815 39 H 0.148 0.852 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.115 0.885 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -4.512 -17.901 6.850 19.690 hybrid contribution 2.059 0.867 0.312 2.256 sum -2.453 -17.033 7.162 18.640 Atomic orbital electron populations 1.70199 1.07417 1.27238 1.48358 1.25805 0.95445 1.02546 0.93512 0.85645 0.78723 0.79327 0.78364 1.19942 1.20938 1.19251 1.22059 0.93419 0.93015 1.54247 0.92671 1.19087 0.87698 0.89437 0.85243 0.95842 1.86500 1.38495 1.96396 1.15605 1.22722 0.95840 0.89583 0.99820 1.61919 1.36661 1.01912 1.25144 1.22505 0.98189 0.98484 0.89643 1.22510 0.94370 0.84033 1.00575 1.48142 1.50904 1.10639 1.23510 1.18588 0.81150 0.81782 0.83660 1.90746 1.42128 1.46553 1.66354 1.19606 0.96955 1.00873 0.94668 1.21946 0.92411 0.97809 0.99643 1.21448 1.01141 0.96024 0.91532 1.21745 0.93527 0.96742 1.01919 1.17702 0.94920 0.94411 0.87054 1.91505 1.88636 1.70267 1.61902 1.21116 1.01058 0.98480 0.92887 1.21746 0.96580 0.96829 0.84929 1.22503 0.93884 0.90862 1.01103 0.93021 0.80445 0.95799 0.91176 0.90130 0.95417 0.86296 0.88774 0.82326 0.80368 0.81471 0.85199 0.89449 0.89021 0.88510 0.95741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.68 12.84 21.45 0.28 -51.41 16 2 C 0.03 1.61 5.40 84.65 0.46 2.07 16 3 Si 0.95 42.14 29.54 68.60 2.03 44.17 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.59 -31.12 8.76 25.60 0.22 -30.90 16 8 H 0.06 2.83 7.74 -2.91 -0.02 2.81 16 9 C 0.24 11.73 2.89 29.85 0.09 11.82 16 10 H 0.02 1.27 6.83 -2.39 -0.02 1.26 16 11 O -0.57 -28.07 12.60 -148.98 -1.88 -29.95 16 12 C 0.05 1.85 4.61 86.31 0.40 2.24 16 13 N -0.53 -17.19 4.42 -895.27 -3.96 -21.15 16 14 C 0.04 1.18 5.45 86.38 0.47 1.66 16 15 C 0.11 2.37 4.87 86.35 0.42 2.79 16 16 N -0.60 -14.90 3.01 -821.33 -2.47 -17.37 16 17 C 0.56 15.05 7.41 86.79 0.64 15.70 16 18 O -0.58 -19.48 16.26 -3.85 -0.06 -19.54 16 19 C -0.12 -2.54 5.34 -20.09 -0.11 -2.65 16 20 C -0.10 -1.49 7.39 22.53 0.17 -1.32 16 21 C -0.08 -0.88 10.03 22.23 0.22 -0.65 16 22 C -0.12 -1.50 10.02 22.37 0.22 -1.27 16 23 C 0.08 1.45 7.29 22.34 0.16 1.61 16 24 F -0.14 -2.95 17.26 44.97 0.78 -2.17 16 25 C -0.12 -2.53 9.58 22.57 0.22 -2.31 16 26 C 0.12 3.03 6.61 86.35 0.57 3.60 16 27 C 0.05 1.22 5.59 86.38 0.48 1.71 16 28 H 0.26 14.29 8.31 -92.70 -0.77 13.51 16 29 H 0.35 15.58 9.04 -74.06 -0.67 14.91 16 30 H 0.02 0.93 7.99 -2.39 -0.02 0.91 16 31 H 0.07 2.57 7.76 -2.39 -0.02 2.56 16 32 H 0.08 2.62 6.71 -2.39 -0.02 2.61 16 33 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.12 2.09 4.57 -2.39 -0.01 2.08 16 35 H 0.09 1.98 7.96 -2.39 -0.02 1.96 16 36 H 0.16 1.94 5.82 -2.91 -0.02 1.92 16 37 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 38 H 0.17 1.16 8.06 -2.91 -0.02 1.13 16 39 H 0.13 3.08 7.98 -2.91 -0.02 3.05 16 40 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.09 2.34 7.05 -2.38 -0.02 2.32 16 42 H 0.10 2.41 7.89 -2.39 -0.02 2.39 16 43 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -68.99 354.69 -0.28 -69.27 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 0.38 Total: 24.07 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 4.64 Total: 4.08 kcal Atomic # 7 Polarization: -83.77 SS G_CDS: -6.16 Total: -89.93 kcal Atomic # 8 Polarization: -47.55 SS G_CDS: -1.94 Total: -49.49 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.17 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -68.99 -0.28 -69.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809574359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.533 kcal (2) G-P(sol) polarization free energy of solvation -68.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds