Wall clock time and date at job start Fri Apr 10 2020 18:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34729 * 116.99619 * 2 1 4 4 O 1.21485 * 120.00186 * 0.02562 * 3 2 1 5 5 C 1.47582 * 119.99527 * 180.02562 * 3 2 1 6 6 C 1.41548 * 126.52462 * 180.02562 * 5 3 2 7 7 C 1.35341 * 105.50438 * 179.97438 * 6 5 3 8 8 N 1.35053 * 107.24172 * 359.97438 * 7 6 5 9 9 C 1.46504 * 124.87912 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.46622 * 125.00206 * 9 8 7 11 11 O 1.21276 * 119.99976 * 359.72621 * 10 9 8 12 12 N 1.34778 * 119.99518 * 179.97438 * 10 9 8 13 13 C 1.46961 * 120.59830 * 359.72121 * 12 10 9 14 14 C 1.53811 * 108.39932 * 124.75748 * 13 12 10 15 15 N 1.46962 * 108.57634 * 49.63725 * 14 13 12 16 16 C 1.36943 * 120.58890 * 124.63148 * 15 14 13 17 17 H 1.07997 * 119.99591 * 208.18036 * 16 15 14 18 18 C 1.38806 * 120.00555 * 28.17406 * 16 15 14 19 19 N 1.31624 * 119.99662 * 17.56460 * 18 16 15 20 20 Si 1.86793 * 120.00510 * 197.56059 * 18 16 15 21 21 H 1.48505 * 109.46937 * 60.00178 * 20 18 16 22 22 H 1.48504 * 109.47458 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47147 * 300.00638 * 20 18 16 24 24 C 1.46956 * 118.81525 * 304.64695 * 15 14 13 25 25 C 1.46962 * 120.58831 * 180.02562 * 12 10 9 26 26 N 1.28465 * 110.23979 * 0.24975 * 8 7 6 27 27 H 1.08992 * 109.47198 * 59.99939 * 1 2 3 28 28 H 1.08999 * 109.46891 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46872 * 299.99729 * 1 2 3 30 30 H 1.08003 * 127.24513 * 359.96790 * 6 5 3 31 31 H 1.07994 * 126.38206 * 179.97438 * 7 6 5 32 32 H 1.09001 * 109.46857 * 5.00505 * 9 8 7 33 33 H 1.08996 * 109.47410 * 245.00356 * 9 8 7 34 34 H 1.08999 * 109.60936 * 244.54350 * 13 12 10 35 35 H 1.09008 * 109.60714 * 5.05204 * 13 12 10 36 36 H 1.09005 * 109.73920 * 289.85107 * 14 13 12 37 37 H 1.08996 * 109.53466 * 169.31101 * 14 13 12 38 38 H 0.97003 * 119.99848 * 180.02562 * 19 18 16 39 39 H 1.09001 * 109.61243 * 295.48319 * 24 15 14 40 40 H 1.08999 * 109.75208 * 175.05428 * 24 15 14 41 41 H 1.08996 * 109.61724 * 354.95105 * 25 12 10 42 42 H 1.09005 * 109.61201 * 115.28989 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4020 2.2193 0.0005 5 6 3.5375 1.2777 -0.0006 6 6 4.3192 2.4577 -0.0001 7 6 5.6063 2.0390 -0.0004 8 7 5.5879 0.6886 -0.0003 9 6 6.7782 -0.1655 -0.0011 10 6 6.7119 -1.1204 1.1629 11 8 5.7662 -1.0872 1.9214 12 7 7.7061 -2.0080 1.3637 13 6 8.8578 -2.0601 0.4524 14 6 10.1420 -1.8966 1.2830 15 7 10.0906 -2.8338 2.4138 16 6 11.1003 -3.7362 2.6174 17 1 10.8941 -4.6754 3.1091 18 6 12.3888 -3.4439 2.1918 19 7 12.7247 -2.2016 1.9157 20 14 13.6461 -4.8135 2.0110 21 1 13.1577 -5.8062 1.0204 22 1 14.9361 -4.2431 1.5462 23 1 13.8442 -5.4800 3.3231 24 6 8.9362 -2.7856 3.3219 25 6 7.6545 -2.9456 2.4942 26 7 4.3766 0.2606 -0.0053 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.9635 3.4775 0.0002 31 1 6.4844 2.6676 -0.0005 32 1 7.6703 0.4546 0.0880 33 1 6.8198 -0.7301 -0.9324 34 1 8.8726 -3.0199 -0.0640 35 1 8.7854 -1.2516 -0.2752 36 1 10.2107 -0.8751 1.6573 37 1 11.0090 -2.1202 0.6615 38 1 13.6250 -1.9973 1.6180 39 1 8.9192 -1.8275 3.8414 40 1 9.0054 -3.5947 4.0490 41 1 6.7873 -2.7223 3.1156 42 1 7.5828 -3.9668 2.1197 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900776691.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:59 Heat of formation + Delta-G solvation = 8.817411 kcal Electronic energy + Delta-G solvation = -26994.850173 eV Core-core repulsion = 22978.890498 eV Total energy + Delta-G solvation = -4015.959674 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.84419 -40.23217 -39.70194 -36.97852 -36.50922 -34.08490 -33.70130 -31.56076 -30.93906 -30.36855 -28.99542 -27.71023 -26.70551 -24.16923 -23.55951 -22.87973 -21.73838 -20.90087 -20.34908 -18.88158 -18.00853 -17.62232 -17.30158 -16.65915 -16.49061 -16.28545 -15.68653 -15.36822 -14.88302 -14.79883 -14.09476 -13.88176 -13.74738 -13.61327 -13.47628 -13.40181 -13.29062 -13.11858 -12.91477 -12.28190 -12.17096 -11.81241 -11.46193 -10.96105 -10.93333 -10.92375 -10.88200 -10.85341 -10.62637 -10.39219 -10.20365 -9.99018 -9.86802 -9.33374 -9.17903 -8.72543 -8.43880 -6.85118 -5.97662 -3.41837 1.27151 1.88709 2.08095 2.64131 2.66396 3.09036 3.21457 3.28020 3.34379 3.35685 4.15737 4.34829 4.43608 4.61260 4.68119 4.78261 4.94165 5.01976 5.07971 5.11707 5.21629 5.34128 5.45698 5.55469 5.57772 5.69062 5.77657 5.93220 6.04848 6.10240 6.15205 6.23477 6.26419 6.50436 6.65476 6.76666 7.01205 7.27973 7.51409 7.59539 7.65641 7.87850 8.23707 8.25173 9.00116 9.62268 10.18446 11.10464 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.031701 B = 0.002479 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.052900 B =11291.210382 C =11796.072569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.342 6.342 3 C 0.562 3.438 4 O -0.506 6.506 5 C -0.020 4.020 6 C -0.173 4.173 7 C -0.015 4.015 8 N -0.262 5.262 9 C 0.100 3.900 10 C 0.498 3.502 11 O -0.528 6.528 12 N -0.592 5.592 13 C 0.075 3.925 14 C 0.157 3.843 15 N -0.590 5.590 16 C -0.258 4.258 17 H 0.068 0.932 18 C 0.004 3.996 19 N -0.903 5.903 20 Si 0.906 3.094 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.132 3.868 25 C 0.098 3.902 26 N -0.200 5.200 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.166 0.834 31 H 0.188 0.812 32 H 0.137 0.863 33 H 0.125 0.875 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.025 0.975 37 H 0.103 0.897 38 H 0.257 0.743 39 H 0.024 0.976 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.118 6.179 -7.299 17.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.257 6.257 3 C 0.405 3.595 4 O -0.393 6.393 5 C -0.177 4.177 6 C -0.201 4.201 7 C -0.155 4.155 8 N -0.052 5.052 9 C -0.024 4.024 10 C 0.282 3.718 11 O -0.404 6.404 12 N -0.325 5.325 13 C -0.049 4.049 14 C 0.030 3.970 15 N -0.313 5.313 16 C -0.387 4.387 17 H 0.086 0.914 18 C -0.194 4.194 19 N -0.547 5.547 20 Si 0.735 3.265 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.208 1.208 24 C 0.005 3.995 25 C -0.026 4.026 26 N -0.038 5.038 27 H 0.082 0.918 28 H 0.121 0.879 29 H 0.082 0.918 30 H 0.183 0.817 31 H 0.205 0.795 32 H 0.155 0.845 33 H 0.142 0.858 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.043 0.957 37 H 0.121 0.879 38 H 0.067 0.933 39 H 0.042 0.958 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.531 5.306 -6.924 16.948 hybrid contribution 0.757 0.266 -0.115 0.810 sum -13.775 5.572 -7.039 16.442 Atomic orbital electron populations 1.23309 0.76083 1.03861 1.02516 1.86683 1.23263 1.32022 1.83774 1.19578 0.86343 0.81521 0.72079 1.90836 1.65594 1.36120 1.46714 1.20694 0.90865 0.91413 1.14772 1.21672 0.90865 0.99193 1.08366 1.22941 1.00207 0.84195 1.08207 1.45115 1.04766 1.05349 1.49929 1.21996 0.84806 0.94418 1.01198 1.20141 0.83192 0.82131 0.86299 1.90767 1.32768 1.70375 1.46504 1.48023 1.20494 1.34770 1.29200 1.22896 0.88101 1.01443 0.92471 1.21276 0.93495 0.92670 0.89541 1.43971 1.20381 1.40730 1.26234 1.19168 0.86763 0.95668 1.37076 0.91414 1.25066 0.96814 0.95956 1.01609 1.69995 1.19242 1.16427 1.49050 0.86324 0.80435 0.81450 0.78295 1.20888 1.21555 1.20766 1.21309 0.86628 0.99471 0.92113 1.22265 1.00546 0.91730 0.88046 1.73777 0.89510 1.26232 1.14266 0.91826 0.87917 0.91775 0.81685 0.79502 0.84537 0.85759 0.91109 0.91318 0.95697 0.87950 0.93345 0.95803 0.91323 0.89867 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.57 101.05 1.07 1.40 16 2 O -0.34 -4.72 10.58 -40.57 -0.43 -5.15 16 3 C 0.56 8.33 7.97 34.54 0.28 8.61 16 4 O -0.51 -7.89 16.72 -19.25 -0.32 -8.21 16 5 C -0.02 -0.30 7.17 -82.78 -0.59 -0.89 16 6 C -0.17 -2.08 10.81 -39.35 -0.43 -2.51 16 7 C -0.01 -0.16 11.40 -17.17 -0.20 -0.35 16 8 N -0.26 -3.41 3.16 -62.51 -0.20 -3.61 16 9 C 0.10 1.11 5.22 -5.19 -0.03 1.08 16 10 C 0.50 7.81 7.70 -10.98 -0.08 7.73 16 11 O -0.53 -10.35 15.06 5.56 0.08 -10.26 16 12 N -0.59 -9.50 2.94 -172.19 -0.51 -10.01 16 13 C 0.08 1.13 6.53 -3.37 -0.02 1.11 16 14 C 0.16 3.18 5.53 -3.37 -0.02 3.17 16 15 N -0.59 -13.40 2.97 -171.75 -0.51 -13.91 16 16 C -0.26 -6.50 9.58 -15.06 -0.14 -6.64 16 17 H 0.07 1.69 7.89 -52.49 -0.41 1.27 16 18 C 0.00 0.11 4.90 -17.43 -0.09 0.03 16 19 N -0.90 -24.07 11.20 55.49 0.62 -23.45 16 20 Si 0.91 20.22 29.59 -169.99 -5.03 15.19 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 C 0.13 2.58 6.67 -3.58 -0.02 2.56 16 25 C 0.10 1.68 6.59 -3.58 -0.02 1.65 16 26 N -0.20 -3.17 10.92 33.41 0.36 -2.80 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.17 1.62 8.06 -52.48 -0.42 1.20 16 31 H 0.19 1.18 8.06 -52.49 -0.42 0.75 16 32 H 0.14 1.07 7.63 -51.93 -0.40 0.68 16 33 H 0.12 1.09 7.90 -51.93 -0.41 0.68 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 0.75 5.91 -51.92 -0.31 0.45 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 2.32 5.99 -51.93 -0.31 2.01 16 38 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 1.30 7.94 -51.93 -0.41 0.89 16 41 H 0.08 1.43 6.99 -51.93 -0.36 1.07 16 42 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 356.75 15.07 5.38 5.38 Total: -1.00 -34.07 356.75 -6.40 -40.47 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -5.55 Total: -0.58 kcal Atomic # 6 Polarization: 17.24 SS G_CDS: -0.30 Total: 16.94 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -0.23 Total: -53.78 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.67 Total: -23.62 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.19 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.07 -6.40 -40.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900776691.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.287 kcal (2) G-P(sol) polarization free energy of solvation -34.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds