Wall clock time and date at job start Fri Apr 10 2020 18:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34729 * 116.99619 * 2 1 4 4 O 1.21485 * 120.00186 * 0.02562 * 3 2 1 5 5 C 1.47582 * 119.99527 * 180.02562 * 3 2 1 6 6 C 1.41548 * 126.52462 * 180.02562 * 5 3 2 7 7 C 1.35341 * 105.50438 * 179.97438 * 6 5 3 8 8 N 1.35053 * 107.24172 * 359.97438 * 7 6 5 9 9 C 1.46504 * 124.87912 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.46622 * 125.00206 * 9 8 7 11 11 O 1.21276 * 119.99976 * 359.72621 * 10 9 8 12 12 N 1.34778 * 119.99518 * 179.97438 * 10 9 8 13 13 C 1.46961 * 120.59830 * 359.72121 * 12 10 9 14 14 C 1.53811 * 108.39932 * 124.75748 * 13 12 10 15 15 N 1.46962 * 108.57634 * 49.63725 * 14 13 12 16 16 C 1.36943 * 120.58890 * 124.63148 * 15 14 13 17 17 H 1.07997 * 119.99591 * 208.18036 * 16 15 14 18 18 C 1.38806 * 120.00555 * 28.17406 * 16 15 14 19 19 N 1.31624 * 119.99662 * 17.56460 * 18 16 15 20 20 Si 1.86793 * 120.00510 * 197.56059 * 18 16 15 21 21 H 1.48505 * 109.46937 * 60.00178 * 20 18 16 22 22 H 1.48504 * 109.47458 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47147 * 300.00638 * 20 18 16 24 24 C 1.46956 * 118.81525 * 304.64695 * 15 14 13 25 25 C 1.46962 * 120.58831 * 180.02562 * 12 10 9 26 26 N 1.28465 * 110.23979 * 0.24975 * 8 7 6 27 27 H 1.08992 * 109.47198 * 59.99939 * 1 2 3 28 28 H 1.08999 * 109.46891 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46872 * 299.99729 * 1 2 3 30 30 H 1.08003 * 127.24513 * 359.96790 * 6 5 3 31 31 H 1.07994 * 126.38206 * 179.97438 * 7 6 5 32 32 H 1.09001 * 109.46857 * 5.00505 * 9 8 7 33 33 H 1.08996 * 109.47410 * 245.00356 * 9 8 7 34 34 H 1.08999 * 109.60936 * 244.54350 * 13 12 10 35 35 H 1.09008 * 109.60714 * 5.05204 * 13 12 10 36 36 H 1.09005 * 109.73920 * 289.85107 * 14 13 12 37 37 H 1.08996 * 109.53466 * 169.31101 * 14 13 12 38 38 H 0.97003 * 119.99848 * 180.02562 * 19 18 16 39 39 H 1.09001 * 109.61243 * 295.48319 * 24 15 14 40 40 H 1.08999 * 109.75208 * 175.05428 * 24 15 14 41 41 H 1.08996 * 109.61724 * 354.95105 * 25 12 10 42 42 H 1.09005 * 109.61201 * 115.28989 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4020 2.2193 0.0005 5 6 3.5375 1.2777 -0.0006 6 6 4.3192 2.4577 -0.0001 7 6 5.6063 2.0390 -0.0004 8 7 5.5879 0.6886 -0.0003 9 6 6.7782 -0.1655 -0.0011 10 6 6.7119 -1.1204 1.1629 11 8 5.7662 -1.0872 1.9214 12 7 7.7061 -2.0080 1.3637 13 6 8.8578 -2.0601 0.4524 14 6 10.1420 -1.8966 1.2830 15 7 10.0906 -2.8338 2.4138 16 6 11.1003 -3.7362 2.6174 17 1 10.8941 -4.6754 3.1091 18 6 12.3888 -3.4439 2.1918 19 7 12.7247 -2.2016 1.9157 20 14 13.6461 -4.8135 2.0110 21 1 13.1577 -5.8062 1.0204 22 1 14.9361 -4.2431 1.5462 23 1 13.8442 -5.4800 3.3231 24 6 8.9362 -2.7856 3.3219 25 6 7.6545 -2.9456 2.4942 26 7 4.3766 0.2606 -0.0053 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.9635 3.4775 0.0002 31 1 6.4844 2.6676 -0.0005 32 1 7.6703 0.4546 0.0880 33 1 6.8198 -0.7301 -0.9324 34 1 8.8726 -3.0199 -0.0640 35 1 8.7854 -1.2516 -0.2752 36 1 10.2107 -0.8751 1.6573 37 1 11.0090 -2.1202 0.6615 38 1 13.6250 -1.9973 1.6180 39 1 8.9192 -1.8275 3.8414 40 1 9.0054 -3.5947 4.0490 41 1 6.7873 -2.7223 3.1156 42 1 7.5828 -3.9668 2.1197 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900776691.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:58 Heat of formation + Delta-G solvation = -13.867360 kcal Electronic energy + Delta-G solvation = -26995.833858 eV Core-core repulsion = 22978.890498 eV Total energy + Delta-G solvation = -4016.943360 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.77317 -41.29978 -40.95645 -38.47043 -37.55536 -35.65647 -34.73604 -33.22235 -31.90235 -31.82060 -30.04199 -28.83158 -28.00605 -25.60246 -24.87174 -24.24461 -22.73098 -22.19740 -21.44225 -20.24605 -18.98657 -18.90767 -18.37546 -17.97795 -17.55422 -17.45700 -16.91675 -16.74145 -16.36903 -15.99784 -15.47043 -15.26481 -15.04112 -14.92728 -14.68792 -14.54589 -14.29934 -14.15776 -14.04843 -13.35577 -13.26301 -13.17246 -13.05194 -12.63785 -12.50162 -12.25915 -12.01905 -11.98955 -11.90001 -11.86458 -11.85587 -11.67824 -11.12743 -10.57615 -10.31087 -10.13066 -9.87587 -8.64722 -7.88526 -5.35227 0.21558 1.01062 1.22545 1.46551 1.51687 1.52835 1.59085 1.74606 2.02582 2.10260 2.52374 3.17539 3.26756 3.42312 3.60399 3.85881 3.90997 4.04003 4.22598 4.23719 4.25105 4.28774 4.31355 4.36834 4.57995 4.63659 4.64852 4.67844 4.70856 4.72934 4.80645 5.06498 5.16447 5.22810 5.28002 5.51840 5.62008 5.67590 5.73510 6.37044 6.38915 6.49903 6.89739 7.03821 7.13443 7.80234 8.32430 9.16357 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.031701 B = 0.002479 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.052900 B =11291.210382 C =11796.072569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.559 3.441 4 O -0.524 6.524 5 C -0.045 4.045 6 C -0.186 4.186 7 C 0.004 3.996 8 N -0.267 5.267 9 C 0.100 3.900 10 C 0.496 3.504 11 O -0.571 6.571 12 N -0.595 5.595 13 C 0.090 3.910 14 C 0.159 3.841 15 N -0.609 5.609 16 C -0.266 4.266 17 H 0.065 0.935 18 C -0.041 4.041 19 N -0.929 5.929 20 Si 0.964 3.036 21 H -0.276 1.276 22 H -0.294 1.294 23 H -0.282 1.282 24 C 0.134 3.866 25 C 0.108 3.892 26 N -0.241 5.241 27 H 0.071 0.929 28 H 0.130 0.870 29 H 0.065 0.935 30 H 0.182 0.818 31 H 0.235 0.765 32 H 0.179 0.821 33 H 0.155 0.845 34 H 0.074 0.926 35 H 0.121 0.879 36 H 0.009 0.991 37 H 0.078 0.922 38 H 0.253 0.747 39 H 0.010 0.990 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.937 6.598 -8.775 17.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.402 3.598 4 O -0.412 6.412 5 C -0.202 4.202 6 C -0.214 4.214 7 C -0.136 4.136 8 N -0.057 5.057 9 C -0.022 4.022 10 C 0.283 3.717 11 O -0.451 6.451 12 N -0.328 5.328 13 C -0.033 4.033 14 C 0.032 3.968 15 N -0.333 5.333 16 C -0.396 4.396 17 H 0.082 0.918 18 C -0.237 4.237 19 N -0.575 5.575 20 Si 0.793 3.207 21 H -0.202 1.202 22 H -0.220 1.220 23 H -0.208 1.208 24 C 0.008 3.992 25 C -0.016 4.016 26 N -0.079 5.079 27 H 0.090 0.910 28 H 0.148 0.852 29 H 0.084 0.916 30 H 0.199 0.801 31 H 0.251 0.749 32 H 0.196 0.804 33 H 0.173 0.827 34 H 0.092 0.908 35 H 0.139 0.861 36 H 0.027 0.973 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.028 0.972 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.376 5.709 -8.416 17.610 hybrid contribution 0.657 0.138 0.419 0.791 sum -13.719 5.847 -7.997 16.922 Atomic orbital electron populations 1.23644 0.73915 1.05896 1.03042 1.86666 1.25585 1.31746 1.83446 1.19773 0.86738 0.81571 0.71677 1.90804 1.66041 1.36539 1.47813 1.21011 0.90988 0.92616 1.15575 1.22027 0.91322 0.99294 1.08709 1.23677 1.01179 0.83465 1.05328 1.45346 1.04352 1.06485 1.49542 1.22297 0.85585 0.94386 0.99932 1.20914 0.81968 0.81895 0.86903 1.90757 1.34369 1.71458 1.48474 1.48069 1.21040 1.34741 1.28923 1.22744 0.84852 1.03788 0.91908 1.21189 0.95409 0.91113 0.89047 1.44249 1.20514 1.40775 1.27714 1.19427 0.87642 0.96061 1.36490 0.91750 1.25693 0.98326 0.97678 1.02025 1.70123 1.19281 1.17813 1.50235 0.85398 0.78135 0.79140 0.78049 1.20228 1.22000 1.20822 1.21317 0.86978 0.98701 0.92240 1.21986 0.98653 0.92529 0.88443 1.73709 0.90819 1.27288 1.16095 0.90995 0.85191 0.91584 0.80110 0.74850 0.80385 0.82713 0.90798 0.86121 0.97330 0.90425 0.93794 0.97207 0.91335 0.90176 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.57 113.37 1.20 1.69 16 2 O -0.36 -9.97 10.58 -56.39 -0.60 -10.56 16 3 C 0.56 16.71 7.97 70.29 0.56 17.27 16 4 O -0.52 -16.43 16.72 19.88 0.33 -16.10 16 5 C -0.05 -1.32 7.17 42.42 0.30 -1.02 16 6 C -0.19 -4.12 10.81 22.42 0.24 -3.88 16 7 C 0.00 0.07 11.40 83.53 0.95 1.02 16 8 N -0.27 -6.19 3.16 -351.68 -1.11 -7.30 16 9 C 0.10 1.81 5.22 85.63 0.45 2.25 16 10 C 0.50 14.40 7.70 87.66 0.68 15.07 16 11 O -0.57 -21.93 15.06 -3.02 -0.05 -21.97 16 12 N -0.60 -17.83 2.94 -817.08 -2.40 -20.24 16 13 C 0.09 2.46 6.53 86.56 0.57 3.03 16 14 C 0.16 6.28 5.53 86.56 0.48 6.76 16 15 N -0.61 -27.55 2.97 -697.30 -2.07 -29.62 16 16 C -0.27 -13.44 9.58 84.03 0.80 -12.64 16 17 H 0.06 3.21 7.89 -2.91 -0.02 3.19 16 18 C -0.04 -2.10 4.90 84.86 0.42 -1.68 16 19 N -0.93 -49.76 11.20 21.65 0.24 -49.51 16 20 Si 0.96 41.50 29.59 68.60 2.03 43.53 16 21 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 22 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 23 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 24 C 0.13 5.27 6.67 86.43 0.58 5.84 16 25 C 0.11 3.63 6.59 86.43 0.57 4.20 16 26 N -0.24 -7.36 10.92 -48.22 -0.53 -7.89 16 27 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.18 3.22 8.06 -2.91 -0.02 3.19 16 31 H 0.24 1.61 8.06 -2.91 -0.02 1.59 16 32 H 0.18 1.72 7.63 -2.39 -0.02 1.70 16 33 H 0.16 1.90 7.90 -2.39 -0.02 1.88 16 34 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.12 2.03 5.91 -2.38 -0.01 2.02 16 36 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 37 H 0.08 3.49 5.99 -2.39 -0.01 3.47 16 38 H 0.25 13.18 8.31 -92.71 -0.77 12.41 16 39 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.07 2.62 7.94 -2.39 -0.02 2.60 16 41 H 0.08 2.75 6.99 -2.39 -0.02 2.73 16 42 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 Total: -1.00 -77.03 356.75 4.69 -72.35 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 1.04 Total: 9.39 kcal Atomic # 6 Polarization: 30.13 SS G_CDS: 7.79 Total: 37.92 kcal Atomic # 7 Polarization: -108.69 SS G_CDS: -5.87 Total: -114.55 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -0.31 Total: -48.63 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -77.03 4.69 -72.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900776691.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.478 kcal (2) G-P(sol) polarization free energy of solvation -77.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds