Wall clock time and date at job start Fri Apr 10 2020 18:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.64111 * 2 1 4 4 C 1.54332 * 110.85182 * 236.83009 * 2 1 3 5 5 N 1.47023 * 107.26961 * 219.67381 * 4 2 1 6 6 C 1.34773 * 125.65071 * 178.85296 * 5 4 2 7 7 O 1.21603 * 119.99887 * 359.71429 * 6 5 4 8 8 C 1.47521 * 120.00175 * 179.44261 * 6 5 4 9 9 C 1.36601 * 125.77047 * 180.27419 * 8 6 5 10 10 N 1.34814 * 106.83441 * 179.97438 * 9 8 6 11 11 C 1.46502 * 126.59016 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47223 * 124.99824 * 11 10 9 13 13 N 1.34782 * 119.99660 * 180.02562 * 12 11 10 14 14 O 1.21273 * 120.00044 * 0.02562 * 12 11 10 15 15 N 1.40209 * 106.81464 * 359.97438 * 10 9 8 16 16 N 1.28760 * 108.36603 * 359.72482 * 15 10 9 17 17 C 1.47429 * 108.70139 * 358.58464 * 5 4 2 18 18 C 1.54909 * 104.83064 * 24.35611 * 17 5 4 19 19 H 1.09000 * 111.00555 * 81.06615 * 18 17 5 20 20 N 1.46500 * 111.00417 * 204.91190 * 18 17 5 21 21 C 1.36928 * 120.00570 * 273.54995 * 20 18 17 22 22 H 1.08006 * 119.99842 * 359.97438 * 21 20 18 23 23 C 1.38808 * 120.00427 * 179.97438 * 21 20 18 24 24 N 1.31623 * 120.00253 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 119.99975 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47255 * 89.99790 * 25 23 21 27 27 H 1.48501 * 109.47099 * 209.99749 * 25 23 21 28 28 H 1.48508 * 109.47088 * 329.99647 * 25 23 21 29 29 H 1.08998 * 109.46827 * 296.85747 * 1 2 3 30 30 H 1.08998 * 109.46950 * 56.85774 * 1 2 3 31 31 H 1.08999 * 109.46800 * 176.86210 * 1 2 3 32 32 H 1.08999 * 109.99014 * 100.19873 * 4 2 1 33 33 H 1.08998 * 109.78107 * 339.03141 * 4 2 1 34 34 H 1.07993 * 126.57720 * 359.97438 * 9 8 6 35 35 H 1.08999 * 109.47279 * 245.00356 * 11 10 9 36 36 H 1.09006 * 109.47108 * 4.99792 * 11 10 9 37 37 H 0.96999 * 120.00412 * 359.97438 * 13 12 11 38 38 H 0.97003 * 119.99468 * 180.02562 * 13 12 11 39 39 H 1.08998 * 110.36548 * 143.19539 * 17 5 4 40 40 H 1.08998 * 110.36892 * 265.41217 * 17 5 4 41 41 H 0.97001 * 119.99695 * 93.54710 * 20 18 17 42 42 H 0.96996 * 119.99912 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0794 -0.7891 -1.2072 5 7 3.2446 -1.5521 -0.7363 6 6 3.9924 -2.3861 -1.4856 7 8 3.7186 -2.5614 -2.6573 8 6 5.1466 -3.0820 -0.8858 9 6 5.9840 -3.9448 -1.5342 10 7 6.8982 -4.3539 -0.6317 11 6 8.0026 -5.2867 -0.8689 12 6 9.3025 -4.6387 -0.4672 13 7 10.4612 -5.3146 -0.5985 14 8 9.3060 -3.5092 -0.0257 15 7 6.5894 -3.7141 0.5771 16 7 5.5565 -2.9685 0.3892 17 6 3.4633 -1.2486 0.6897 18 6 2.0790 -0.7933 1.2152 19 1 1.4452 -1.6511 1.4404 20 7 2.2215 0.0737 2.3874 21 6 2.3175 -0.4758 3.6380 22 1 2.2877 -1.5485 3.7602 23 6 2.4530 0.3457 4.7486 24 7 2.5448 -0.1825 5.9507 25 14 2.5037 2.2010 4.5374 26 1 1.1243 2.7456 4.6121 27 1 3.3313 2.7995 5.6154 28 1 3.0961 2.5328 3.2166 29 1 -0.3633 0.4643 0.9168 30 1 -0.3633 0.5618 -0.8605 31 1 -0.3633 -1.0261 -0.0563 32 1 2.3815 -0.1004 -1.9962 33 1 1.3156 -1.4714 -1.5803 34 1 5.9249 -4.2420 -2.5707 35 1 7.8489 -6.1896 -0.2780 36 1 8.0379 -5.5466 -1.9269 37 1 10.4584 -6.2182 -0.9512 38 1 11.2979 -4.8976 -0.3395 39 1 3.7961 -2.1405 1.2206 40 1 4.1946 -0.4478 0.7994 41 1 2.2479 1.0371 2.2777 42 1 2.6391 0.3916 6.7268 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939808129.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:14 Heat of formation + Delta-G solvation = 58.948916 kcal Electronic energy + Delta-G solvation = -27069.011682 eV Core-core repulsion = 23087.518624 eV Total energy + Delta-G solvation = -3981.493058 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.25965 -39.94559 -39.50098 -37.50627 -34.80208 -34.25566 -34.06163 -32.47207 -31.05477 -30.82668 -28.92440 -27.77789 -26.35826 -23.94371 -23.09685 -22.86597 -21.42159 -20.99326 -20.04871 -19.57839 -18.24856 -17.70368 -17.45420 -17.00009 -16.37673 -16.08918 -16.00859 -15.35338 -15.15840 -14.62233 -14.47685 -14.18537 -13.96589 -13.49123 -13.19126 -13.14309 -13.13580 -12.69607 -12.54151 -12.17955 -11.88671 -11.70863 -11.40965 -11.12890 -10.98983 -10.94527 -10.61134 -10.54737 -10.30356 -10.28272 -10.25370 -9.96704 -9.81990 -9.53441 -9.29190 -8.91639 -8.28933 -7.26151 -5.72416 -3.09431 1.04090 1.72037 1.86349 1.98791 2.82438 3.17897 3.42226 3.44356 3.44851 3.50240 3.94724 4.13326 4.23972 4.35838 4.55559 4.63377 4.83341 4.99950 5.11268 5.19982 5.22277 5.50019 5.63514 5.67377 5.79685 5.87085 5.89811 5.94077 6.07083 6.21320 6.21944 6.25679 6.42153 6.54922 6.56638 6.65847 6.77141 6.90859 7.63619 7.74943 7.97654 8.03279 8.33600 8.46309 9.23175 9.95130 10.13401 11.45588 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012147 B = 0.003555 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.534639 B = 7875.138648 C = 9704.130509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.118 4.118 3 H 0.082 0.918 4 C 0.119 3.881 5 N -0.597 5.597 6 C 0.615 3.385 7 O -0.556 6.556 8 C -0.091 4.091 9 C 0.088 3.912 10 N -0.362 5.362 11 C 0.105 3.895 12 C 0.502 3.498 13 N -0.851 5.851 14 O -0.504 6.504 15 N -0.031 5.031 16 N -0.188 5.188 17 C 0.075 3.925 18 C 0.181 3.819 19 H 0.073 0.927 20 N -0.734 5.734 21 C -0.245 4.245 22 H 0.093 0.907 23 C 0.008 3.992 24 N -0.931 5.931 25 Si 0.882 3.118 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.276 1.276 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.204 0.796 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.403 0.597 38 H 0.409 0.591 39 H 0.095 0.905 40 H 0.069 0.931 41 H 0.364 0.636 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.998 -13.134 -19.924 26.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.138 4.138 3 H 0.100 0.900 4 C -0.004 4.004 5 N -0.329 5.329 6 C 0.402 3.598 7 O -0.435 6.435 8 C -0.229 4.229 9 C -0.068 4.068 10 N -0.148 5.148 11 C -0.021 4.021 12 C 0.284 3.716 13 N -0.418 5.418 14 O -0.376 6.376 15 N -0.012 5.012 16 N -0.063 5.063 17 C -0.050 4.050 18 C 0.070 3.930 19 H 0.091 0.909 20 N -0.376 5.376 21 C -0.375 4.375 22 H 0.110 0.890 23 C -0.188 4.188 24 N -0.578 5.578 25 Si 0.713 3.287 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.202 1.202 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.221 0.779 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.231 0.769 38 H 0.241 0.759 39 H 0.113 0.887 40 H 0.087 0.913 41 H 0.197 0.803 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.107 -12.490 -18.612 25.016 hybrid contribution 0.593 0.769 -1.084 1.455 sum 11.700 -11.721 -19.696 25.733 Atomic orbital electron populations 1.21683 0.93733 1.01903 1.01951 1.22540 0.96586 0.99751 0.94933 0.89953 1.21996 0.87324 0.94311 0.96736 1.48269 1.29171 1.42390 1.13026 1.16358 0.80420 0.78466 0.84594 1.90762 1.71389 1.65782 1.15537 1.21369 1.03054 1.06802 0.91638 1.23212 0.89767 0.96481 0.97310 1.49909 1.21441 1.33517 1.09893 1.21676 0.83162 0.91786 1.05474 1.20379 0.85679 0.86744 0.78833 1.43699 1.09023 1.19851 1.69185 1.90934 1.86425 1.17909 1.42348 1.82246 1.10421 1.07204 1.01308 1.74937 1.04278 1.12321 1.14752 1.23650 1.01023 1.02529 0.77813 1.21374 0.92494 0.93470 0.85711 0.90913 1.42622 1.88619 1.03845 1.02489 1.19066 1.42742 0.94048 0.81612 0.88961 1.24653 1.01713 0.97266 0.95139 1.69701 1.56633 1.34067 0.97420 0.86584 0.77645 0.87400 0.77115 1.21092 1.21763 1.20241 0.91445 0.93099 0.92530 0.91702 0.91203 0.77914 0.85277 0.84801 0.76855 0.75897 0.88702 0.91269 0.80312 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.16 37.16 0.34 -1.50 16 2 C -0.12 -1.84 3.16 -88.78 -0.28 -2.12 16 3 H 0.08 1.28 7.99 -51.93 -0.42 0.86 16 4 C 0.12 1.79 6.48 -3.06 -0.02 1.77 16 5 N -0.60 -10.30 3.33 -171.74 -0.57 -10.87 16 6 C 0.62 10.57 7.85 -12.48 -0.10 10.47 16 7 O -0.56 -10.04 17.19 5.27 0.09 -9.95 16 8 C -0.09 -1.45 6.84 -83.55 -0.57 -2.02 16 9 C 0.09 1.00 11.27 -16.83 -0.19 0.81 16 10 N -0.36 -4.09 3.41 -62.24 -0.21 -4.31 16 11 C 0.11 0.54 7.02 -5.19 -0.04 0.51 16 12 C 0.50 3.95 8.13 -10.98 -0.09 3.86 16 13 N -0.85 -2.60 8.87 31.22 0.28 -2.32 16 14 O -0.50 -7.33 16.56 5.56 0.09 -7.24 16 15 N -0.03 -0.52 12.88 60.35 0.78 0.25 16 16 N -0.19 -3.43 9.40 32.85 0.31 -3.12 16 17 C 0.08 1.44 5.80 -2.53 -0.01 1.43 16 18 C 0.18 3.51 3.14 -65.78 -0.21 3.30 16 19 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 20 N -0.73 -17.17 5.08 -51.35 -0.26 -17.43 16 21 C -0.24 -6.87 10.47 -15.06 -0.16 -7.03 16 22 H 0.09 2.79 8.06 -52.48 -0.42 2.37 16 23 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 24 N -0.93 -29.44 13.97 55.49 0.78 -28.66 16 25 Si 0.88 22.23 27.74 -169.99 -4.71 17.52 16 26 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 28 H -0.28 -6.57 6.52 56.52 0.37 -6.21 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.74 8.07 -51.93 -0.42 0.32 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.99 7.77 -51.93 -0.40 0.59 16 34 H 0.20 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.13 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.13 0.06 8.08 -51.93 -0.42 -0.36 16 37 H 0.40 -0.38 8.83 -40.82 -0.36 -0.75 16 38 H 0.41 1.26 8.93 -40.82 -0.36 0.89 16 39 H 0.09 1.97 6.16 -51.93 -0.32 1.65 16 40 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 41 H 0.36 8.34 5.57 -40.82 -0.23 8.12 16 42 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 358.56 15.07 5.40 5.40 Total: -1.00 -40.76 358.56 -4.93 -45.68 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -5.47 Total: 5.40 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -1.42 Total: 9.63 kcal Atomic # 7 Polarization: -67.55 SS G_CDS: 1.09 Total: -66.46 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: 0.18 Total: -17.18 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.71 Total: 17.52 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -40.76 -4.93 -45.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939808129.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.633 kcal (2) G-P(sol) polarization free energy of solvation -40.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds