Wall clock time and date at job start Fri Apr 10 2020 18:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.64111 * 2 1 4 4 C 1.54332 * 110.85182 * 236.83009 * 2 1 3 5 5 N 1.47023 * 107.26961 * 219.67381 * 4 2 1 6 6 C 1.34773 * 125.65071 * 178.85296 * 5 4 2 7 7 O 1.21603 * 119.99887 * 359.71429 * 6 5 4 8 8 C 1.47521 * 120.00175 * 179.44261 * 6 5 4 9 9 C 1.36601 * 125.77047 * 180.27419 * 8 6 5 10 10 N 1.34814 * 106.83441 * 179.97438 * 9 8 6 11 11 C 1.46502 * 126.59016 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47223 * 124.99824 * 11 10 9 13 13 N 1.34782 * 119.99660 * 180.02562 * 12 11 10 14 14 O 1.21273 * 120.00044 * 0.02562 * 12 11 10 15 15 N 1.40209 * 106.81464 * 359.97438 * 10 9 8 16 16 N 1.28760 * 108.36603 * 359.72482 * 15 10 9 17 17 C 1.47429 * 108.70139 * 358.58464 * 5 4 2 18 18 C 1.54909 * 104.83064 * 24.35611 * 17 5 4 19 19 H 1.09000 * 111.00555 * 81.06615 * 18 17 5 20 20 N 1.46500 * 111.00417 * 204.91190 * 18 17 5 21 21 C 1.36928 * 120.00570 * 273.54995 * 20 18 17 22 22 H 1.08006 * 119.99842 * 359.97438 * 21 20 18 23 23 C 1.38808 * 120.00427 * 179.97438 * 21 20 18 24 24 N 1.31623 * 120.00253 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 119.99975 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47255 * 89.99790 * 25 23 21 27 27 H 1.48501 * 109.47099 * 209.99749 * 25 23 21 28 28 H 1.48508 * 109.47088 * 329.99647 * 25 23 21 29 29 H 1.08998 * 109.46827 * 296.85747 * 1 2 3 30 30 H 1.08998 * 109.46950 * 56.85774 * 1 2 3 31 31 H 1.08999 * 109.46800 * 176.86210 * 1 2 3 32 32 H 1.08999 * 109.99014 * 100.19873 * 4 2 1 33 33 H 1.08998 * 109.78107 * 339.03141 * 4 2 1 34 34 H 1.07993 * 126.57720 * 359.97438 * 9 8 6 35 35 H 1.08999 * 109.47279 * 245.00356 * 11 10 9 36 36 H 1.09006 * 109.47108 * 4.99792 * 11 10 9 37 37 H 0.96999 * 120.00412 * 359.97438 * 13 12 11 38 38 H 0.97003 * 119.99468 * 180.02562 * 13 12 11 39 39 H 1.08998 * 110.36548 * 143.19539 * 17 5 4 40 40 H 1.08998 * 110.36892 * 265.41217 * 17 5 4 41 41 H 0.97001 * 119.99695 * 93.54710 * 20 18 17 42 42 H 0.96996 * 119.99912 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0794 -0.7891 -1.2072 5 7 3.2446 -1.5521 -0.7363 6 6 3.9924 -2.3861 -1.4856 7 8 3.7186 -2.5614 -2.6573 8 6 5.1466 -3.0820 -0.8858 9 6 5.9840 -3.9448 -1.5342 10 7 6.8982 -4.3539 -0.6317 11 6 8.0026 -5.2867 -0.8689 12 6 9.3025 -4.6387 -0.4672 13 7 10.4612 -5.3146 -0.5985 14 8 9.3060 -3.5092 -0.0257 15 7 6.5894 -3.7141 0.5771 16 7 5.5565 -2.9685 0.3892 17 6 3.4633 -1.2486 0.6897 18 6 2.0790 -0.7933 1.2152 19 1 1.4452 -1.6511 1.4404 20 7 2.2215 0.0737 2.3874 21 6 2.3175 -0.4758 3.6380 22 1 2.2877 -1.5485 3.7602 23 6 2.4530 0.3457 4.7486 24 7 2.5448 -0.1825 5.9507 25 14 2.5037 2.2010 4.5374 26 1 1.1243 2.7456 4.6121 27 1 3.3313 2.7995 5.6154 28 1 3.0961 2.5328 3.2166 29 1 -0.3633 0.4643 0.9168 30 1 -0.3633 0.5618 -0.8605 31 1 -0.3633 -1.0261 -0.0563 32 1 2.3815 -0.1004 -1.9962 33 1 1.3156 -1.4714 -1.5803 34 1 5.9249 -4.2420 -2.5707 35 1 7.8489 -6.1896 -0.2780 36 1 8.0379 -5.5466 -1.9269 37 1 10.4584 -6.2182 -0.9512 38 1 11.2979 -4.8976 -0.3395 39 1 3.7961 -2.1405 1.2206 40 1 4.1946 -0.4478 0.7994 41 1 2.2479 1.0371 2.2777 42 1 2.6391 0.3916 6.7268 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939808129.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:13 Heat of formation + Delta-G solvation = 22.756782 kcal Electronic energy + Delta-G solvation = -27070.581091 eV Core-core repulsion = 23087.518624 eV Total energy + Delta-G solvation = -3983.062467 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.28321 -40.99573 -40.46689 -38.92367 -35.99962 -35.63108 -34.79042 -33.95012 -32.90560 -31.96181 -29.66094 -29.45873 -27.49618 -25.72531 -24.40355 -23.82741 -22.70600 -21.96221 -21.53878 -20.69974 -19.49774 -19.04872 -18.32086 -17.90520 -17.50172 -17.22800 -16.97705 -16.50541 -16.21797 -16.11286 -15.63698 -15.50815 -15.06927 -14.81278 -14.76776 -14.55026 -14.35152 -13.99671 -13.85832 -13.48335 -13.20427 -13.07440 -12.96181 -12.86946 -12.30114 -12.17187 -12.01818 -11.90957 -11.83586 -11.77216 -11.34574 -11.27774 -11.06236 -10.93768 -10.76401 -10.38277 -9.69439 -9.31267 -7.99684 -5.34754 0.11589 0.63586 1.00808 1.39692 1.43760 1.44070 1.50115 1.91146 2.19339 2.35465 2.50657 3.07047 3.29483 3.37814 3.53859 3.68944 3.75885 3.88446 3.91893 3.95872 4.07469 4.08305 4.33456 4.36865 4.43493 4.56999 4.63594 4.74071 4.93078 5.01477 5.12100 5.16906 5.26291 5.34026 5.36004 5.48911 5.79269 5.79374 6.23585 6.34698 6.37976 6.82196 7.07777 7.09976 7.23388 7.81846 8.02220 9.21772 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012147 B = 0.003555 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.534639 B = 7875.138648 C = 9704.130509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.105 4.105 3 H 0.088 0.912 4 C 0.119 3.881 5 N -0.602 5.602 6 C 0.616 3.384 7 O -0.564 6.564 8 C -0.131 4.131 9 C 0.121 3.879 10 N -0.347 5.347 11 C 0.094 3.906 12 C 0.498 3.502 13 N -0.825 5.825 14 O -0.584 6.584 15 N -0.078 5.078 16 N -0.232 5.232 17 C 0.094 3.906 18 C 0.173 3.827 19 H 0.062 0.938 20 N -0.734 5.734 21 C -0.229 4.229 22 H 0.056 0.944 23 C -0.061 4.061 24 N -0.983 5.983 25 Si 0.953 3.047 26 H -0.272 1.272 27 H -0.300 1.300 28 H -0.253 1.253 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.255 0.745 35 H 0.163 0.837 36 H 0.196 0.804 37 H 0.426 0.574 38 H 0.411 0.589 39 H 0.072 0.928 40 H 0.051 0.949 41 H 0.369 0.631 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.359 -13.753 -23.708 29.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.124 4.124 3 H 0.107 0.893 4 C -0.002 4.002 5 N -0.334 5.334 6 C 0.404 3.596 7 O -0.444 6.444 8 C -0.270 4.270 9 C -0.036 4.036 10 N -0.131 5.131 11 C -0.029 4.029 12 C 0.281 3.719 13 N -0.391 5.391 14 O -0.462 6.462 15 N -0.058 5.058 16 N -0.105 5.105 17 C -0.033 4.033 18 C 0.063 3.937 19 H 0.080 0.920 20 N -0.377 5.377 21 C -0.360 4.360 22 H 0.074 0.926 23 C -0.253 4.253 24 N -0.633 5.633 25 Si 0.781 3.219 26 H -0.198 1.198 27 H -0.227 1.227 28 H -0.177 1.177 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.270 0.730 35 H 0.181 0.819 36 H 0.213 0.787 37 H 0.259 0.741 38 H 0.243 0.757 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.203 0.797 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.514 -13.201 -22.469 28.490 hybrid contribution 0.627 0.691 -0.039 0.933 sum 12.141 -12.510 -22.508 28.470 Atomic orbital electron populations 1.21665 0.91920 1.02635 1.02607 1.22475 0.97995 0.99366 0.92605 0.89326 1.22131 0.86898 0.94602 0.96616 1.48275 1.30054 1.43050 1.11987 1.16543 0.80537 0.78106 0.84461 1.90739 1.71880 1.66203 1.15608 1.21570 1.04329 1.09212 0.91897 1.23901 0.87596 0.93605 0.98519 1.50224 1.22039 1.32617 1.08249 1.22423 0.79770 0.90826 1.09832 1.20879 0.87423 0.85907 0.77720 1.43538 1.07863 1.20510 1.67150 1.90921 1.87577 1.21380 1.46328 1.82119 1.10726 1.08751 1.04208 1.74898 1.05380 1.13753 1.16505 1.23153 0.99968 1.00846 0.79288 1.21516 0.92724 0.93472 0.85986 0.91991 1.42518 1.88669 1.04477 1.01999 1.18973 1.40725 0.92556 0.83698 0.92637 1.25477 1.02421 1.02671 0.94685 1.69890 1.59028 1.35958 0.98447 0.85434 0.78049 0.80740 0.77714 1.19820 1.22675 1.17733 0.92855 0.90024 0.92134 0.90130 0.89886 0.72961 0.81929 0.78740 0.74143 0.75717 0.90924 0.93106 0.79686 0.93395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 9.16 71.98 0.66 -2.60 16 2 C -0.10 -3.09 3.16 -9.60 -0.03 -3.12 16 3 H 0.09 2.54 7.99 -2.39 -0.02 2.52 16 4 C 0.12 3.36 6.48 86.73 0.56 3.93 16 5 N -0.60 -20.61 3.33 -815.53 -2.71 -23.32 16 6 C 0.62 20.74 7.85 86.69 0.68 21.42 16 7 O -0.56 -19.27 17.19 -4.04 -0.07 -19.34 16 8 C -0.13 -4.14 6.84 40.82 0.28 -3.86 16 9 C 0.12 2.46 11.27 83.85 0.95 3.41 16 10 N -0.35 -7.21 3.41 -350.82 -1.20 -8.40 16 11 C 0.09 0.63 7.02 85.63 0.60 1.23 16 12 C 0.50 6.96 8.13 87.66 0.71 7.68 16 13 N -0.82 -2.95 8.87 -173.53 -1.54 -4.49 16 14 O -0.58 -17.32 16.56 -3.01 -0.05 -17.37 16 15 N -0.08 -2.68 12.88 37.02 0.48 -2.21 16 16 N -0.23 -8.83 9.40 -49.99 -0.47 -9.30 16 17 C 0.09 3.73 5.80 86.85 0.50 4.23 16 18 C 0.17 6.80 3.14 46.38 0.15 6.95 16 19 H 0.06 2.57 8.04 -2.39 -0.02 2.55 16 20 N -0.73 -34.74 5.08 -316.37 -1.61 -36.35 16 21 C -0.23 -13.32 10.47 84.03 0.88 -12.44 16 22 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 23 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 24 N -0.98 -64.67 13.97 21.65 0.30 -64.37 16 25 Si 0.95 46.52 27.74 68.60 1.90 48.43 16 26 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 27 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 28 H -0.25 -11.20 6.52 99.48 0.65 -10.55 16 29 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 1.46 8.07 -2.39 -0.02 1.44 16 32 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.08 2.14 7.77 -2.39 -0.02 2.13 16 34 H 0.25 2.29 8.06 -2.91 -0.02 2.26 16 35 H 0.16 0.09 8.14 -2.39 -0.02 0.07 16 36 H 0.20 -1.08 8.08 -2.38 -0.02 -1.10 16 37 H 0.43 -2.44 8.83 -92.71 -0.82 -3.26 16 38 H 0.41 1.84 8.93 -92.71 -0.83 1.01 16 39 H 0.07 3.23 6.16 -2.39 -0.01 3.22 16 40 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.37 16.60 5.57 -92.71 -0.52 16.09 16 42 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 Total: -1.00 -97.24 358.56 0.32 -96.93 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -1.13 Total: 16.22 kcal Atomic # 6 Polarization: 17.18 SS G_CDS: 6.41 Total: 23.58 kcal Atomic # 7 Polarization: -141.70 SS G_CDS: -6.75 Total: -148.45 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -0.12 Total: -36.71 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.90 Total: 48.43 kcal Total: -97.24 0.32 -96.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939808129.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.683 kcal (2) G-P(sol) polarization free energy of solvation -97.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds