Wall clock time and date at job start Fri Apr 10 2020 18:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35509 * 117.00007 * 2 1 4 4 C 1.39649 * 120.49358 * 179.97438 * 3 2 1 5 5 C 1.39145 * 118.20430 * 180.02562 * 4 3 2 6 6 C 1.48446 * 120.51347 * 180.02562 * 5 4 3 7 7 O 1.21486 * 120.00329 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99942 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99697 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.46719 * 180.02562 * 9 8 6 11 11 H 1.08995 * 110.64028 * 303.31454 * 10 9 8 12 12 C 1.54324 * 110.71890 * 66.45585 * 10 9 8 13 13 N 1.47020 * 107.39983 * 140.47837 * 12 10 9 14 14 C 1.36946 * 125.64749 * 181.10549 * 13 12 10 15 15 H 1.08000 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.38814 * 119.99867 * 180.02562 * 14 13 12 17 17 N 1.31617 * 119.99930 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99829 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47105 * 89.99400 * 18 16 14 20 20 H 1.48501 * 109.47179 * 209.99958 * 18 16 14 21 21 H 1.48502 * 109.47052 * 329.99719 * 18 16 14 22 22 C 1.47743 * 108.53125 * 1.18235 * 13 12 10 23 23 C 1.54909 * 104.83995 * 335.74644 * 22 13 12 24 24 H 1.09001 * 111.03628 * 155.18095 * 23 22 13 25 25 O 1.42891 * 111.00999 * 279.02161 * 23 22 13 26 26 N 1.33277 * 118.96666 * 0.27086 * 5 4 3 27 27 C 1.31529 * 120.88819 * 359.44418 * 26 5 4 28 28 N 1.31894 * 121.98321 * 0.57327 * 27 26 5 29 29 H 1.09003 * 109.46954 * 300.00370 * 1 2 3 30 30 H 1.08998 * 109.46745 * 60.00166 * 1 2 3 31 31 H 1.08996 * 109.46727 * 180.02562 * 1 2 3 32 32 H 1.07997 * 120.89475 * 0.02562 * 4 3 2 33 33 H 0.97000 * 119.99671 * 0.02562 * 8 6 5 34 34 H 1.08996 * 109.47222 * 60.01303 * 9 8 6 35 35 H 1.08997 * 109.47438 * 300.00126 * 9 8 6 36 36 H 1.09002 * 109.88322 * 259.97367 * 12 10 9 37 37 H 1.09000 * 109.88025 * 20.98532 * 12 10 9 38 38 H 0.96998 * 119.99524 * 180.02562 * 17 16 14 39 39 H 1.09003 * 110.29227 * 216.94505 * 22 13 12 40 40 H 1.08996 * 110.53057 * 94.67717 * 22 13 12 41 41 H 0.96705 * 114.00245 * 292.19608 * 25 23 22 42 42 H 1.07997 * 119.00548 * 180.30851 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4381 1.2925 0.0005 5 6 4.0198 2.5565 0.0011 6 6 5.4966 2.7066 0.0011 7 8 6.2074 1.7214 0.0002 8 7 6.0491 3.9360 0.0011 9 6 7.5066 4.0841 0.0016 10 6 7.8681 5.5708 0.0021 11 1 7.4148 6.0767 -0.8503 12 6 7.4363 6.2372 1.3254 13 7 8.4964 7.1811 1.7087 14 6 8.5041 7.9576 2.8367 15 1 7.6808 7.9055 3.5337 16 6 9.5696 8.8124 3.0836 17 7 10.5726 8.8763 2.2338 18 14 9.5797 9.8721 4.6218 19 1 10.2390 9.1326 5.7280 20 1 10.3249 11.1282 4.3528 21 1 8.1832 10.1981 5.0076 22 6 9.5487 7.1515 0.6721 23 6 9.4079 5.7613 0.0034 24 1 9.8007 5.7746 -1.0133 25 8 10.0485 4.7501 0.7838 26 7 3.2304 3.6303 0.0065 27 6 1.9210 3.5058 0.0005 28 7 1.3314 2.3260 0.0000 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0276 0.0005 32 1 4.0481 0.4013 0.0005 33 1 5.4816 4.7227 0.0014 34 1 7.9203 3.6096 -0.8881 35 1 7.9196 3.6098 0.8918 36 1 6.4976 6.7723 1.1820 37 1 7.3165 5.4798 2.1001 38 1 11.3173 9.4733 2.4065 39 1 10.5328 7.2545 1.1294 40 1 9.3868 7.9427 -0.0598 41 1 11.0119 4.8280 0.8141 42 1 1.3102 4.3965 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958072877.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:22 Heat of formation + Delta-G solvation = -34.770880 kcal Electronic energy + Delta-G solvation = -26629.862457 eV Core-core repulsion = 22612.012652 eV Total energy + Delta-G solvation = -4017.849805 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.68278 -39.74790 -38.76135 -38.16369 -34.99503 -34.53159 -33.73506 -32.19590 -32.10507 -29.76165 -28.16561 -27.72278 -25.95939 -24.84889 -24.61621 -23.25772 -21.20953 -20.30714 -19.76753 -18.92689 -18.57195 -17.29952 -16.77330 -16.68357 -16.14819 -16.00959 -15.76719 -15.42263 -15.14166 -14.83945 -14.63857 -14.49074 -14.10090 -13.83906 -13.77565 -13.20919 -12.69271 -12.51241 -12.34814 -12.10338 -11.94510 -11.38578 -11.24381 -11.22598 -10.79699 -10.72969 -10.66127 -10.61978 -10.35726 -10.12772 -9.98497 -9.81934 -9.72406 -9.57464 -9.10986 -8.97833 -8.67809 -6.83286 -5.68534 -3.07979 0.18079 0.63349 2.31827 2.60333 3.00916 3.39753 3.44780 3.46326 3.52574 3.61634 3.68815 4.39728 4.47600 4.60238 4.72957 4.77396 4.83478 4.91417 5.12224 5.14724 5.21593 5.31394 5.40533 5.52029 5.60099 5.69711 5.90045 6.02294 6.11527 6.28500 6.32288 6.41478 6.46599 6.62951 6.65853 6.86589 7.28222 7.39587 7.58228 7.62297 7.75559 8.06538 8.23642 8.37418 9.18991 9.80655 10.45016 11.36859 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020359 B = 0.002518 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.016375 B =11116.638993 C =12037.241555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.298 6.298 3 C 0.363 3.637 4 C -0.185 4.185 5 C 0.163 3.837 6 C 0.566 3.434 7 O -0.525 6.525 8 N -0.698 5.698 9 C 0.137 3.863 10 C -0.106 4.106 11 H 0.087 0.913 12 C 0.144 3.856 13 N -0.598 5.598 14 C -0.217 4.217 15 H 0.078 0.922 16 C -0.013 4.013 17 N -0.926 5.926 18 Si 0.915 3.085 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.126 3.874 23 C 0.083 3.917 24 H 0.055 0.945 25 O -0.558 6.558 26 N -0.517 5.517 27 C 0.337 3.663 28 N -0.567 5.567 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.166 0.834 33 H 0.413 0.587 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.021 0.979 37 H 0.028 0.972 38 H 0.252 0.748 39 H 0.112 0.888 40 H 0.020 0.980 41 H 0.375 0.625 42 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.375 -13.706 -8.391 22.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.201 6.201 3 C 0.175 3.825 4 C -0.209 4.209 5 C 0.018 3.982 6 C 0.349 3.651 7 O -0.400 6.400 8 N -0.348 5.348 9 C 0.014 3.986 10 C -0.126 4.126 11 H 0.106 0.894 12 C 0.018 3.982 13 N -0.323 5.323 14 C -0.345 4.345 15 H 0.095 0.905 16 C -0.208 4.208 17 N -0.575 5.575 18 Si 0.746 3.254 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.208 1.208 22 C 0.001 3.999 23 C 0.022 3.978 24 H 0.073 0.927 25 O -0.363 6.363 26 N -0.238 5.238 27 C 0.049 3.951 28 N -0.298 5.298 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.184 0.816 33 H 0.249 0.751 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.039 0.961 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.129 0.871 40 H 0.038 0.962 41 H 0.222 0.778 42 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -16.753 -13.951 -8.184 23.287 hybrid contribution 0.340 0.641 0.665 0.984 sum -16.413 -13.310 -7.519 22.430 Atomic orbital electron populations 1.23014 0.76221 1.03659 1.02948 1.86267 1.23699 1.23598 1.86547 1.20039 0.89234 0.85199 0.88039 1.21922 0.92687 1.00688 1.05636 1.21513 0.95178 0.88612 0.92860 1.17649 0.85118 0.84243 0.78099 1.90817 1.61322 1.38095 1.49783 1.45976 1.09153 1.07797 1.71904 1.21383 0.77448 0.96504 1.03252 1.22514 0.96036 0.94098 0.99912 0.89440 1.21311 0.92146 0.92210 0.92567 1.44408 1.18804 1.46100 1.23029 1.19088 1.03818 1.14564 0.97035 0.90461 1.24759 0.96977 1.00175 0.98895 1.69742 1.10170 1.41413 1.36212 0.86051 0.77377 0.79605 0.82351 1.21605 1.21693 1.20758 1.22631 0.97447 0.89619 0.90252 1.23189 0.90711 0.90895 0.92998 0.92695 1.86386 1.23946 1.51695 1.74280 1.68396 1.06671 1.32927 1.15779 1.24739 0.88005 0.93844 0.88537 1.68059 1.42027 0.99343 1.20325 0.91758 0.91783 0.87989 0.81615 0.75116 0.91320 0.89643 0.96125 0.95408 0.93768 0.87087 0.96224 0.77772 0.77571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.41 101.05 1.05 1.27 16 2 O -0.30 -2.79 10.49 -18.22 -0.19 -2.98 16 3 C 0.36 3.85 7.54 -16.68 -0.13 3.72 16 4 C -0.19 -2.13 9.68 -38.72 -0.37 -2.50 16 5 C 0.16 2.04 6.79 -82.70 -0.56 1.48 16 6 C 0.57 8.28 7.83 -12.05 -0.09 8.18 16 7 O -0.52 -9.04 16.42 5.38 0.09 -8.95 16 8 N -0.70 -9.80 5.39 -61.05 -0.33 -10.13 16 9 C 0.14 2.13 4.59 -4.04 -0.02 2.11 16 10 C -0.11 -1.79 2.95 -88.78 -0.26 -2.05 16 11 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 12 C 0.14 2.96 6.52 -3.06 -0.02 2.94 16 13 N -0.60 -15.12 3.41 -169.81 -0.58 -15.69 16 14 C -0.22 -6.03 10.28 -15.05 -0.15 -6.19 16 15 H 0.08 2.10 7.83 -52.49 -0.41 1.68 16 16 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 17 N -0.93 -26.52 10.11 55.49 0.56 -25.96 16 18 Si 0.92 22.06 29.55 -169.99 -5.02 17.03 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.13 2.92 5.65 -2.35 -0.01 2.91 16 23 C 0.08 1.50 4.17 -24.58 -0.10 1.40 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 O -0.56 -10.14 12.22 -35.23 -0.43 -10.57 16 26 N -0.52 -5.82 9.70 -11.20 -0.11 -5.93 16 27 C 0.34 3.10 12.27 -92.30 -1.13 1.96 16 28 N -0.57 -5.61 9.36 -14.64 -0.14 -5.75 16 29 H 0.06 0.38 8.12 -51.93 -0.42 -0.05 16 30 H 0.06 0.36 8.12 -51.93 -0.42 -0.06 16 31 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.17 1.82 7.73 -52.49 -0.41 1.41 16 33 H 0.41 5.31 7.71 -40.82 -0.31 5.00 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.09 1.55 7.44 -51.93 -0.39 1.16 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.03 0.61 7.76 -51.93 -0.40 0.20 16 38 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.11 2.89 5.89 -51.93 -0.31 2.59 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.38 5.56 9.12 45.56 0.42 5.98 16 42 H 0.21 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 357.03 15.07 5.38 5.38 Total: -1.00 -33.59 357.03 -7.42 -41.01 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -4.75 Total: 7.76 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: -1.90 Total: 14.78 kcal Atomic # 7 Polarization: -62.86 SS G_CDS: -0.59 Total: -63.46 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.53 Total: -22.51 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.59 -7.42 -41.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958072877.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.235 kcal (2) G-P(sol) polarization free energy of solvation -33.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds