Wall clock time and date at job start Fri Apr 10 2020 18:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35509 * 117.00007 * 2 1 4 4 C 1.39649 * 120.49358 * 179.97438 * 3 2 1 5 5 C 1.39145 * 118.20430 * 180.02562 * 4 3 2 6 6 C 1.48446 * 120.51347 * 180.02562 * 5 4 3 7 7 O 1.21486 * 120.00329 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99942 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99697 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.46719 * 180.02562 * 9 8 6 11 11 H 1.08995 * 110.64028 * 303.31454 * 10 9 8 12 12 C 1.54324 * 110.71890 * 66.45585 * 10 9 8 13 13 N 1.47020 * 107.39983 * 140.47837 * 12 10 9 14 14 C 1.36946 * 125.64749 * 181.10549 * 13 12 10 15 15 H 1.08000 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.38814 * 119.99867 * 180.02562 * 14 13 12 17 17 N 1.31617 * 119.99930 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99829 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47105 * 89.99400 * 18 16 14 20 20 H 1.48501 * 109.47179 * 209.99958 * 18 16 14 21 21 H 1.48502 * 109.47052 * 329.99719 * 18 16 14 22 22 C 1.47743 * 108.53125 * 1.18235 * 13 12 10 23 23 C 1.54909 * 104.83995 * 335.74644 * 22 13 12 24 24 H 1.09001 * 111.03628 * 155.18095 * 23 22 13 25 25 O 1.42891 * 111.00999 * 279.02161 * 23 22 13 26 26 N 1.33277 * 118.96666 * 0.27086 * 5 4 3 27 27 C 1.31529 * 120.88819 * 359.44418 * 26 5 4 28 28 N 1.31894 * 121.98321 * 0.57327 * 27 26 5 29 29 H 1.09003 * 109.46954 * 300.00370 * 1 2 3 30 30 H 1.08998 * 109.46745 * 60.00166 * 1 2 3 31 31 H 1.08996 * 109.46727 * 180.02562 * 1 2 3 32 32 H 1.07997 * 120.89475 * 0.02562 * 4 3 2 33 33 H 0.97000 * 119.99671 * 0.02562 * 8 6 5 34 34 H 1.08996 * 109.47222 * 60.01303 * 9 8 6 35 35 H 1.08997 * 109.47438 * 300.00126 * 9 8 6 36 36 H 1.09002 * 109.88322 * 259.97367 * 12 10 9 37 37 H 1.09000 * 109.88025 * 20.98532 * 12 10 9 38 38 H 0.96998 * 119.99524 * 180.02562 * 17 16 14 39 39 H 1.09003 * 110.29227 * 216.94505 * 22 13 12 40 40 H 1.08996 * 110.53057 * 94.67717 * 22 13 12 41 41 H 0.96705 * 114.00245 * 292.19608 * 25 23 22 42 42 H 1.07997 * 119.00548 * 180.30851 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4381 1.2925 0.0005 5 6 4.0198 2.5565 0.0011 6 6 5.4966 2.7066 0.0011 7 8 6.2074 1.7214 0.0002 8 7 6.0491 3.9360 0.0011 9 6 7.5066 4.0841 0.0016 10 6 7.8681 5.5708 0.0021 11 1 7.4148 6.0767 -0.8503 12 6 7.4363 6.2372 1.3254 13 7 8.4964 7.1811 1.7087 14 6 8.5041 7.9576 2.8367 15 1 7.6808 7.9055 3.5337 16 6 9.5696 8.8124 3.0836 17 7 10.5726 8.8763 2.2338 18 14 9.5797 9.8721 4.6218 19 1 10.2390 9.1326 5.7280 20 1 10.3249 11.1282 4.3528 21 1 8.1832 10.1981 5.0076 22 6 9.5487 7.1515 0.6721 23 6 9.4079 5.7613 0.0034 24 1 9.8007 5.7746 -1.0133 25 8 10.0485 4.7501 0.7838 26 7 3.2304 3.6303 0.0065 27 6 1.9210 3.5058 0.0005 28 7 1.3314 2.3260 0.0000 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0276 0.0005 32 1 4.0481 0.4013 0.0005 33 1 5.4816 4.7227 0.0014 34 1 7.9203 3.6096 -0.8881 35 1 7.9196 3.6098 0.8918 36 1 6.4976 6.7723 1.1820 37 1 7.3165 5.4798 2.1001 38 1 11.3173 9.4733 2.4065 39 1 10.5328 7.2545 1.1294 40 1 9.3868 7.9427 -0.0598 41 1 11.0119 4.8280 0.8141 42 1 1.3102 4.3965 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958072877.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:21 Heat of formation + Delta-G solvation = -62.547956 kcal Electronic energy + Delta-G solvation = -26631.066961 eV Core-core repulsion = 22612.012652 eV Total energy + Delta-G solvation = -4019.054309 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -42.50412 -40.87053 -39.83214 -39.38570 -36.33011 -36.18510 -34.63268 -33.87470 -32.97993 -31.42211 -29.49953 -28.68448 -27.43171 -26.22817 -25.39810 -24.65320 -22.47431 -21.82380 -21.18128 -19.93136 -19.43218 -19.06905 -18.15109 -17.40319 -17.33634 -17.08573 -16.79280 -16.61697 -16.54222 -15.95344 -15.88181 -15.61706 -15.37677 -15.20584 -14.91557 -14.55812 -14.39990 -13.92613 -13.65696 -13.15708 -13.03078 -12.99517 -12.71935 -12.62924 -12.33889 -12.04047 -12.01308 -11.87798 -11.81314 -11.78587 -11.55502 -11.41820 -10.79774 -10.67540 -10.62859 -10.36389 -10.18409 -8.83812 -7.77778 -5.19414 -0.71879 -0.15252 1.46866 1.48498 1.52447 1.56720 1.57190 2.03219 2.49916 2.66033 2.78480 2.94179 3.29711 3.37224 3.54377 3.61660 3.75841 3.90860 3.97818 3.98261 4.06782 4.39512 4.39659 4.44806 4.45647 4.61257 4.65639 4.70840 4.84346 4.91794 4.99413 5.02991 5.23477 5.35795 5.41776 5.51988 5.52997 5.79135 5.91960 6.29723 6.32390 6.78594 6.95009 7.00185 7.12534 7.79196 8.42519 9.24748 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020359 B = 0.002518 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.016375 B =11116.638993 C =12037.241555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.307 6.307 3 C 0.364 3.636 4 C -0.193 4.193 5 C 0.153 3.847 6 C 0.567 3.433 7 O -0.556 6.556 8 N -0.691 5.691 9 C 0.151 3.849 10 C -0.091 4.091 11 H 0.115 0.885 12 C 0.141 3.859 13 N -0.621 5.621 14 C -0.235 4.235 15 H 0.076 0.924 16 C -0.066 4.066 17 N -0.947 5.947 18 Si 0.978 3.022 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.272 1.272 22 C 0.126 3.874 23 C 0.095 3.905 24 H 0.092 0.908 25 O -0.569 6.569 26 N -0.526 5.526 27 C 0.340 3.660 28 N -0.564 5.564 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.128 0.872 32 H 0.164 0.836 33 H 0.420 0.580 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.031 0.969 37 H 0.013 0.987 38 H 0.247 0.753 39 H 0.079 0.921 40 H 0.003 0.997 41 H 0.389 0.611 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.296 -14.054 -9.068 24.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.210 6.210 3 C 0.175 3.825 4 C -0.217 4.217 5 C 0.009 3.991 6 C 0.351 3.649 7 O -0.434 6.434 8 N -0.342 5.342 9 C 0.028 3.972 10 C -0.110 4.110 11 H 0.133 0.867 12 C 0.016 3.984 13 N -0.347 5.347 14 C -0.365 4.365 15 H 0.094 0.906 16 C -0.258 4.258 17 N -0.597 5.597 18 Si 0.806 3.194 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.197 1.197 22 C 0.000 4.000 23 C 0.034 3.966 24 H 0.110 0.890 25 O -0.377 6.377 26 N -0.248 5.248 27 C 0.053 3.947 28 N -0.295 5.295 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.146 0.854 32 H 0.182 0.818 33 H 0.257 0.743 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.031 0.969 38 H 0.057 0.943 39 H 0.097 0.903 40 H 0.021 0.979 41 H 0.238 0.762 42 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -18.708 -14.311 -8.870 25.169 hybrid contribution 0.839 0.709 0.892 1.415 sum -17.869 -13.601 -7.979 23.831 Atomic orbital electron populations 1.23297 0.74334 1.05554 1.03169 1.86268 1.25559 1.23047 1.86111 1.20108 0.89042 0.85871 0.87520 1.21928 0.93383 1.00325 1.06080 1.21183 0.94101 0.89479 0.94348 1.17922 0.86057 0.83744 0.77161 1.90794 1.62383 1.38985 1.51207 1.45859 1.08584 1.08103 1.71658 1.21100 0.78321 0.95254 1.02553 1.22459 0.95194 0.94692 0.98695 0.86685 1.21428 0.91562 0.91270 0.94112 1.44715 1.20636 1.46443 1.22872 1.19409 1.03856 1.15085 0.98104 0.90632 1.25549 0.96876 1.01652 1.01749 1.69982 1.10426 1.41803 1.37523 0.85085 0.77616 0.77719 0.78954 1.21559 1.21826 1.19689 1.22509 0.95449 0.92430 0.89577 1.23086 0.91814 0.87736 0.93954 0.88991 1.86371 1.25354 1.51308 1.74628 1.68402 1.07536 1.32412 1.16423 1.25519 0.87564 0.94791 0.86829 1.68170 1.41789 0.99368 1.20213 0.91615 0.91398 0.85375 0.81815 0.74284 0.90079 0.92303 0.95121 0.96919 0.94321 0.90272 0.97890 0.76233 0.73901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.41 113.37 1.18 1.48 16 2 O -0.31 -5.31 10.49 -88.11 -0.92 -6.23 16 3 C 0.36 7.22 7.54 84.91 0.64 7.86 16 4 C -0.19 -4.32 9.68 22.83 0.22 -4.09 16 5 C 0.15 3.71 6.79 41.87 0.28 3.99 16 6 C 0.57 16.28 7.83 86.96 0.68 16.96 16 7 O -0.56 -19.16 16.42 -3.67 -0.06 -19.22 16 8 N -0.69 -18.60 5.39 -465.38 -2.51 -21.11 16 9 C 0.15 4.51 4.59 86.38 0.40 4.90 16 10 C -0.09 -2.91 2.95 -9.60 -0.03 -2.94 16 11 H 0.12 3.08 8.14 -2.39 -0.02 3.07 16 12 C 0.14 5.76 6.52 86.73 0.57 6.33 16 13 N -0.62 -31.65 3.41 -691.17 -2.35 -34.01 16 14 C -0.24 -13.27 10.28 84.03 0.86 -12.40 16 15 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 16 C -0.07 -3.72 5.49 84.86 0.47 -3.25 16 17 N -0.95 -55.32 10.11 21.65 0.22 -55.10 16 18 Si 0.98 45.73 29.55 68.60 2.03 47.76 16 19 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 20 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 C 0.13 5.87 5.65 86.79 0.49 6.36 16 23 C 0.09 3.29 4.17 31.99 0.13 3.42 16 24 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 25 O -0.57 -20.22 12.22 -148.98 -1.82 -22.04 16 26 N -0.53 -10.97 9.70 -189.36 -1.84 -12.81 16 27 C 0.34 5.43 12.27 180.93 2.22 7.65 16 28 N -0.56 -10.00 9.36 -313.00 -2.93 -12.93 16 29 H 0.07 0.64 8.12 -2.39 -0.02 0.62 16 30 H 0.07 0.63 8.12 -2.39 -0.02 0.61 16 31 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.16 3.63 7.73 -2.91 -0.02 3.61 16 33 H 0.42 10.13 7.71 -92.71 -0.71 9.41 16 34 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.06 2.11 7.44 -2.39 -0.02 2.09 16 36 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.01 0.56 7.76 -2.39 -0.02 0.54 16 38 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 39 H 0.08 4.23 5.89 -2.39 -0.01 4.21 16 40 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 41 H 0.39 11.26 9.12 -74.05 -0.68 10.59 16 42 H 0.25 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -73.49 357.03 -2.39 -75.88 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: -0.31 Total: 23.55 kcal Atomic # 6 Polarization: 28.16 SS G_CDS: 8.11 Total: 36.27 kcal Atomic # 7 Polarization: -126.55 SS G_CDS: -9.41 Total: -135.96 kcal Atomic # 8 Polarization: -44.69 SS G_CDS: -2.80 Total: -47.50 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -73.49 -2.39 -75.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958072877.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.334 kcal (2) G-P(sol) polarization free energy of solvation -73.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds