Wall clock time and date at job start Fri Apr 10 2020 18:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35512 * 116.99649 * 2 1 4 4 C 1.39644 * 120.49058 * 179.97438 * 3 2 1 5 5 C 1.39139 * 118.20998 * 179.97438 * 4 3 2 6 6 C 1.48449 * 120.52242 * 179.97438 * 5 4 3 7 7 O 1.21475 * 119.99613 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00057 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99531 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.46883 * 179.97438 * 9 8 6 11 11 H 1.08996 * 110.63567 * 56.68877 * 10 9 8 12 12 C 1.54323 * 110.72165 * 293.54989 * 10 9 8 13 13 N 1.47012 * 107.27122 * 219.44146 * 12 10 9 14 14 C 1.36934 * 125.65126 * 178.90225 * 13 12 10 15 15 H 1.08001 * 120.00031 * 0.02562 * 14 13 12 16 16 C 1.38809 * 120.00576 * 180.02562 * 14 13 12 17 17 N 1.31622 * 119.99812 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00616 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46684 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.47291 * 119.99863 * 18 16 14 21 21 H 1.48496 * 109.47358 * 240.00194 * 18 16 14 22 22 C 1.47421 * 108.70603 * 358.94283 * 13 12 10 23 23 C 1.54913 * 104.83160 * 24.12725 * 22 13 12 24 24 H 1.08995 * 111.00330 * 81.07002 * 23 22 13 25 25 O 1.42901 * 111.00293 * 204.92374 * 23 22 13 26 26 N 1.33284 * 118.96338 * 0.24950 * 5 4 3 27 27 C 1.31530 * 120.88341 * 359.49350 * 26 5 4 28 28 N 1.31892 * 121.98823 * 0.51962 * 27 26 5 29 29 H 1.09004 * 109.46873 * 60.00511 * 1 2 3 30 30 H 1.08996 * 109.46833 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47426 * 300.00121 * 1 2 3 32 32 H 1.08003 * 120.89635 * 359.95673 * 4 3 2 33 33 H 0.96992 * 120.00503 * 359.97438 * 8 6 5 34 34 H 1.09001 * 109.46891 * 60.00097 * 9 8 6 35 35 H 1.08993 * 109.47378 * 299.99469 * 9 8 6 36 36 H 1.08998 * 109.88049 * 338.86070 * 12 10 9 37 37 H 1.09006 * 109.88131 * 100.02179 * 12 10 9 38 38 H 0.97001 * 120.00092 * 179.97438 * 17 16 14 39 39 H 1.09002 * 110.37217 * 142.96726 * 22 13 12 40 40 H 1.09000 * 110.37073 * 265.18249 * 22 13 12 41 41 H 0.96709 * 113.99727 * 292.18738 * 25 23 22 42 42 H 1.08001 * 119.00425 * 180.24395 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4380 1.2926 0.0005 5 6 4.0198 2.5565 0.0000 6 6 5.4966 2.7067 0.0011 7 8 6.2073 1.7215 0.0030 8 7 6.0490 3.9360 0.0010 9 6 7.5065 4.0841 0.0027 10 6 7.8681 5.5709 0.0016 11 1 7.4134 6.0774 0.8530 12 6 7.4384 6.2364 -1.3228 13 7 8.4998 7.1805 -1.7013 14 6 8.5117 7.9579 -2.8286 15 1 7.6910 7.9064 -3.5287 16 6 9.5785 8.8121 -3.0714 17 7 10.5790 8.8745 -2.2184 18 14 9.5945 9.8731 -4.6088 19 1 8.3626 9.6190 -5.3984 20 1 9.6465 11.3056 -4.2211 21 1 10.7864 9.5386 -5.4288 22 6 9.5497 7.1511 -0.6669 23 6 9.4079 5.7613 0.0026 24 1 9.8975 4.9897 -0.5914 25 8 9.9206 5.7807 1.3364 26 7 3.2303 3.6304 0.0040 27 6 1.9210 3.5058 -0.0015 28 7 1.3314 2.3260 -0.0010 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 4.0480 0.4013 0.0017 33 1 5.4816 4.7227 -0.0001 34 1 7.9210 3.6091 -0.8866 35 1 7.9189 3.6103 0.8934 36 1 7.3224 5.4787 -2.0978 37 1 6.4993 6.7715 -1.1812 38 1 11.3247 9.4712 -2.3883 39 1 10.5345 7.2537 -1.1228 40 1 9.3858 7.9440 0.0628 41 1 10.8793 5.8975 1.3875 42 1 1.3102 4.3965 -0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958072879.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:32 Heat of formation + Delta-G solvation = -64.602332 kcal Electronic energy + Delta-G solvation = -26489.949289 eV Core-core repulsion = 22470.805895 eV Total energy + Delta-G solvation = -4019.143393 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.50705 -40.88892 -39.82953 -39.38863 -36.65447 -36.23756 -34.65295 -33.94367 -32.98050 -31.46534 -29.37639 -28.68304 -27.46451 -26.21783 -25.39960 -24.63923 -22.52489 -21.86486 -21.35013 -19.97527 -19.43057 -18.88636 -18.37037 -17.46991 -17.40401 -17.08125 -16.97672 -16.61486 -16.58338 -15.98785 -15.75662 -15.69557 -15.32768 -15.10631 -14.81066 -14.73477 -14.33547 -14.02551 -13.66581 -13.26233 -13.09652 -12.99406 -12.78414 -12.71878 -12.40730 -12.29818 -12.01600 -11.91656 -11.84151 -11.73074 -11.55626 -11.29904 -10.84992 -10.73912 -10.64514 -10.36667 -10.21915 -8.91648 -7.79301 -5.24336 -0.72063 -0.15212 1.48260 1.48425 1.51602 1.55624 1.58956 2.01271 2.47948 2.65822 2.76925 2.94100 3.21548 3.31408 3.52221 3.60211 3.74911 3.76495 3.91443 4.03441 4.11389 4.39576 4.39723 4.43200 4.44692 4.47128 4.60498 4.70155 4.72932 4.88736 4.97222 4.99098 5.17744 5.30628 5.44236 5.49545 5.52244 5.74997 5.91961 6.25623 6.29602 6.78024 6.90537 6.93506 7.08541 7.74553 8.37046 9.22747 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018641 B = 0.002515 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.682550 B =11130.651814 C =12178.970150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.307 6.307 3 C 0.363 3.637 4 C -0.192 4.192 5 C 0.152 3.848 6 C 0.569 3.431 7 O -0.554 6.554 8 N -0.691 5.691 9 C 0.143 3.857 10 C -0.089 4.089 11 H 0.093 0.907 12 C 0.139 3.861 13 N -0.624 5.624 14 C -0.236 4.236 15 H 0.084 0.916 16 C -0.067 4.067 17 N -0.949 5.949 18 Si 0.981 3.019 19 H -0.266 1.266 20 H -0.293 1.293 21 H -0.291 1.291 22 C 0.133 3.867 23 C 0.098 3.902 24 H 0.071 0.929 25 O -0.568 6.568 26 N -0.527 5.527 27 C 0.340 3.660 28 N -0.564 5.564 29 H 0.066 0.934 30 H 0.128 0.872 31 H 0.067 0.933 32 H 0.165 0.835 33 H 0.420 0.580 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.033 0.967 37 H 0.035 0.965 38 H 0.248 0.752 39 H 0.080 0.920 40 H -0.008 1.008 41 H 0.394 0.606 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.395 -15.079 6.616 24.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.210 6.210 3 C 0.174 3.826 4 C -0.216 4.216 5 C 0.008 3.992 6 C 0.353 3.647 7 O -0.432 6.432 8 N -0.341 5.341 9 C 0.020 3.980 10 C -0.108 4.108 11 H 0.111 0.889 12 C 0.014 3.986 13 N -0.351 5.351 14 C -0.365 4.365 15 H 0.102 0.898 16 C -0.260 4.260 17 N -0.599 5.599 18 Si 0.809 3.191 19 H -0.191 1.191 20 H -0.220 1.220 21 H -0.218 1.218 22 C 0.007 3.993 23 C 0.037 3.963 24 H 0.088 0.912 25 O -0.375 6.375 26 N -0.248 5.248 27 C 0.053 3.947 28 N -0.295 5.295 29 H 0.084 0.916 30 H 0.146 0.854 31 H 0.085 0.915 32 H 0.183 0.817 33 H 0.258 0.742 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.010 0.990 41 H 0.244 0.756 42 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -18.819 -15.242 6.669 25.119 hybrid contribution 0.887 0.689 -0.881 1.427 sum -17.933 -14.554 5.787 23.810 Atomic orbital electron populations 1.23296 0.74347 1.05551 1.03161 1.86269 1.25545 1.23042 1.86114 1.20114 0.89076 0.85858 0.87526 1.21927 0.93360 1.00326 1.06006 1.21175 0.94101 0.89471 0.94417 1.17889 0.86058 0.83647 0.77078 1.90790 1.62337 1.38897 1.51161 1.45788 1.08339 1.08214 1.71780 1.21329 0.79145 0.94816 1.02747 1.22237 0.95319 0.94731 0.98492 0.88912 1.21515 0.91827 0.91663 0.93572 1.44607 1.20620 1.46966 1.22876 1.19496 1.04059 1.15269 0.97693 0.89826 1.25635 0.96907 1.01593 1.01847 1.70009 1.10579 1.41727 1.37573 0.84972 0.77591 0.77791 0.78743 1.19076 1.22028 1.21811 1.22332 0.95392 0.92246 0.89351 1.22980 0.93195 0.96975 0.83128 0.91154 1.86346 1.28880 1.96133 1.26187 1.68408 1.07543 1.32446 1.16412 1.25508 0.87571 0.94783 0.86845 1.68169 1.41812 0.99379 1.20188 0.91568 0.85377 0.91468 0.81715 0.74221 0.91254 0.90196 0.94892 0.94663 0.94245 0.90246 0.98982 0.75594 0.73962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.41 113.37 1.18 1.47 16 2 O -0.31 -5.20 10.49 -88.15 -0.93 -6.12 16 3 C 0.36 7.07 7.54 84.91 0.64 7.71 16 4 C -0.19 -4.17 9.68 22.83 0.22 -3.95 16 5 C 0.15 3.60 6.79 41.86 0.28 3.88 16 6 C 0.57 15.76 7.83 86.97 0.68 16.44 16 7 O -0.55 -18.27 16.42 -3.64 -0.06 -18.33 16 8 N -0.69 -18.07 5.39 -465.38 -2.51 -20.58 16 9 C 0.14 4.10 4.99 86.38 0.43 4.53 16 10 C -0.09 -2.92 2.75 -9.60 -0.03 -2.94 16 11 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 12 C 0.14 5.44 6.52 86.73 0.57 6.00 16 13 N -0.62 -31.26 3.39 -692.01 -2.35 -33.61 16 14 C -0.24 -12.96 10.27 84.03 0.86 -12.09 16 15 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 16 C -0.07 -3.75 5.49 84.86 0.47 -3.29 16 17 N -0.95 -55.36 10.09 21.65 0.22 -55.14 16 18 Si 0.98 44.92 29.55 68.60 2.03 46.95 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 20 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 21 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 22 C 0.13 6.35 5.62 86.86 0.49 6.84 16 23 C 0.10 3.57 3.88 31.99 0.12 3.70 16 24 H 0.07 2.47 8.05 -2.39 -0.02 2.45 16 25 O -0.57 -18.43 13.47 -148.98 -2.01 -20.44 16 26 N -0.53 -10.81 9.70 -189.36 -1.84 -12.65 16 27 C 0.34 5.36 12.27 180.93 2.22 7.58 16 28 N -0.56 -9.86 9.36 -313.01 -2.93 -12.79 16 29 H 0.07 0.62 8.12 -2.39 -0.02 0.60 16 30 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.61 8.12 -2.39 -0.02 0.59 16 32 H 0.17 3.52 7.73 -2.91 -0.02 3.49 16 33 H 0.42 10.05 7.71 -92.71 -0.71 9.34 16 34 H 0.07 2.09 8.06 -2.39 -0.02 2.07 16 35 H 0.08 2.27 8.14 -2.39 -0.02 2.26 16 36 H 0.03 1.27 7.76 -2.39 -0.02 1.26 16 37 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 39 H 0.08 4.29 5.87 -2.39 -0.01 4.28 16 40 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 41 H 0.39 9.82 9.12 -74.05 -0.68 9.14 16 42 H 0.24 1.77 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -71.19 358.68 -2.55 -73.74 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: -0.32 Total: 23.09 kcal Atomic # 6 Polarization: 27.74 SS G_CDS: 8.14 Total: 35.88 kcal Atomic # 7 Polarization: -125.36 SS G_CDS: -9.41 Total: -134.76 kcal Atomic # 8 Polarization: -41.90 SS G_CDS: -2.99 Total: -44.90 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -71.19 -2.55 -73.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958072879.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.138 kcal (2) G-P(sol) polarization free energy of solvation -71.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds