Wall clock time and date at job start Fri Apr 10 2020 18:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35505 * 117.00521 * 2 1 4 4 C 1.39648 * 120.49474 * 180.27626 * 3 2 1 5 5 C 1.39143 * 118.20236 * 180.26406 * 4 3 2 6 6 C 1.48445 * 120.51570 * 179.74311 * 5 4 3 7 7 O 1.21479 * 119.99980 * 359.71953 * 6 5 4 8 8 N 1.34781 * 120.00343 * 179.72561 * 6 5 4 9 9 C 1.46495 * 120.00183 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47321 * 179.97438 * 9 8 6 11 11 H 1.08996 * 110.64128 * 303.31902 * 10 9 8 12 12 C 1.54325 * 110.71718 * 66.45279 * 10 9 8 13 13 N 1.47018 * 107.27099 * 140.73458 * 12 10 9 14 14 C 1.36941 * 125.65333 * 181.01921 * 13 12 10 15 15 H 1.08003 * 119.99654 * 10.75826 * 14 13 12 16 16 C 1.38811 * 120.00604 * 190.74952 * 14 13 12 17 17 N 1.31621 * 119.99472 * 9.07328 * 16 14 13 18 18 Si 1.86802 * 120.00075 * 189.06828 * 16 14 13 19 19 H 1.48497 * 109.46995 * 84.99393 * 18 16 14 20 20 H 1.48497 * 109.47222 * 324.99067 * 18 16 14 21 21 H 1.48502 * 109.46692 * 204.99429 * 18 16 14 22 22 C 1.47428 * 108.70261 * 1.29115 * 13 12 10 23 23 C 1.55124 * 104.71992 * 335.55012 * 22 13 12 24 24 H 1.09006 * 111.19065 * 279.19363 * 23 22 13 25 25 O 1.42905 * 110.93980 * 155.29276 * 23 22 13 26 26 N 1.33279 * 118.96985 * 359.46697 * 5 4 3 27 27 C 1.31532 * 120.88561 * 0.28042 * 26 5 4 28 28 N 1.31891 * 121.98637 * 359.97438 * 27 26 5 29 29 H 1.09005 * 109.46945 * 299.99872 * 1 2 3 30 30 H 1.08993 * 109.47253 * 59.99187 * 1 2 3 31 31 H 1.09004 * 109.47569 * 180.02562 * 1 2 3 32 32 H 1.08000 * 120.89757 * 0.02562 * 4 3 2 33 33 H 0.96999 * 119.99502 * 359.97438 * 8 6 5 34 34 H 1.09003 * 109.47316 * 59.99576 * 9 8 6 35 35 H 1.09004 * 109.47201 * 299.99957 * 9 8 6 36 36 H 1.09003 * 109.88667 * 21.31809 * 12 10 9 37 37 H 1.09003 * 110.01476 * 260.22446 * 12 10 9 38 38 H 0.96997 * 119.99379 * 180.02562 * 17 16 14 39 39 H 1.08991 * 110.36854 * 94.48382 * 22 13 12 40 40 H 1.08999 * 110.36513 * 216.80406 * 22 13 12 41 41 H 0.96703 * 114.00004 * 67.95673 * 25 23 22 42 42 H 1.08000 * 119.00733 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 3.4381 1.2923 -0.0058 5 6 4.0199 2.5563 0.0001 6 6 5.4967 2.7063 0.0001 7 8 6.2073 1.7211 0.0001 8 7 6.0492 3.9357 0.0003 9 6 7.5067 4.0837 0.0008 10 6 7.8684 5.5704 0.0003 11 1 7.4151 6.0757 -0.8525 12 6 7.4365 6.2378 1.3231 13 7 8.4954 7.1855 1.6998 14 6 8.5043 7.9667 2.8245 15 1 7.7799 7.7949 3.6070 16 6 9.4444 8.9791 2.9592 17 7 10.2089 9.3070 1.9392 18 14 9.6242 9.8762 4.5878 19 1 10.5322 9.1090 5.4778 20 1 8.2923 10.0051 5.2316 21 1 10.1911 11.2277 4.3484 22 6 9.5431 7.1605 0.6629 23 6 9.4076 5.7649 -0.0007 24 1 9.8990 4.9958 0.5953 25 8 9.9209 5.7816 -1.3343 26 7 3.2305 3.6302 0.0002 27 6 1.9211 3.5057 0.0003 28 7 1.3315 2.3260 -0.0002 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8898 31 1 -0.3634 -1.0277 0.0005 32 1 4.0481 0.4011 -0.0108 33 1 5.4818 4.7224 0.0000 34 1 7.9205 3.6092 -0.8889 35 1 7.9198 3.6093 0.8910 36 1 7.3222 5.4817 2.0998 37 1 6.4956 6.7699 1.1827 38 1 10.8660 10.0142 2.0334 39 1 9.3712 7.9495 -0.0691 40 1 10.5282 7.2705 1.1162 41 1 10.8792 5.9008 -1.3855 42 1 1.3104 4.3965 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958072880.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:38 Heat of formation + Delta-G solvation = -39.549831 kcal Electronic energy + Delta-G solvation = -26478.727970 eV Core-core repulsion = 22460.670934 eV Total energy + Delta-G solvation = -4018.057035 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.70048 -39.79259 -38.77658 -38.16967 -35.26018 -34.73814 -33.75789 -32.23680 -32.16433 -29.84025 -28.15449 -27.59046 -26.04112 -24.86809 -24.63141 -23.24016 -21.25561 -20.41566 -19.91957 -18.99328 -18.59671 -17.06512 -16.93453 -16.69989 -16.36484 -16.03010 -15.79659 -15.56227 -15.17778 -15.01835 -14.64162 -14.54510 -14.07638 -13.94812 -13.65603 -13.03041 -12.88753 -12.52313 -12.45143 -12.11457 -11.96465 -11.66855 -11.25112 -11.18837 -11.02476 -10.81815 -10.75208 -10.65538 -10.61560 -10.08403 -9.93776 -9.83472 -9.74626 -9.58929 -9.23283 -9.05896 -8.65432 -6.88375 -5.80851 -3.15181 0.15913 0.61994 2.29861 2.56435 2.96135 3.36890 3.42156 3.43719 3.50281 3.60449 3.65763 4.35756 4.42607 4.58065 4.67011 4.75697 4.82758 4.87666 5.00760 5.13172 5.19605 5.20883 5.41446 5.44945 5.63826 5.68401 5.85913 5.97025 6.00441 6.16606 6.25245 6.32121 6.41023 6.58640 6.62365 6.79999 7.30072 7.35158 7.48122 7.59958 7.69397 8.00911 8.11197 8.20516 9.11688 9.73376 10.39335 11.31861 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018598 B = 0.002513 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.203722 B =11140.505329 C =12170.928834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.298 6.298 3 C 0.363 3.637 4 C -0.185 4.185 5 C 0.162 3.838 6 C 0.568 3.432 7 O -0.526 6.526 8 N -0.696 5.696 9 C 0.131 3.869 10 C -0.104 4.104 11 H 0.089 0.911 12 C 0.140 3.860 13 N -0.600 5.600 14 C -0.231 4.231 15 H 0.078 0.922 16 C -0.006 4.006 17 N -0.918 5.918 18 Si 0.913 3.087 19 H -0.287 1.287 20 H -0.281 1.281 21 H -0.290 1.290 22 C 0.150 3.850 23 C 0.080 3.920 24 H 0.061 0.939 25 O -0.568 6.568 26 N -0.516 5.516 27 C 0.338 3.662 28 N -0.566 5.566 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.166 0.834 33 H 0.415 0.585 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.029 0.971 37 H 0.028 0.972 38 H 0.254 0.746 39 H 0.038 0.962 40 H 0.071 0.929 41 H 0.377 0.623 42 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.673 -15.283 -6.198 22.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.201 6.201 3 C 0.175 3.825 4 C -0.209 4.209 5 C 0.018 3.982 6 C 0.350 3.650 7 O -0.401 6.401 8 N -0.346 5.346 9 C 0.008 3.992 10 C -0.123 4.123 11 H 0.107 0.893 12 C 0.014 3.986 13 N -0.327 5.327 14 C -0.360 4.360 15 H 0.096 0.904 16 C -0.203 4.203 17 N -0.565 5.565 18 Si 0.743 3.257 19 H -0.215 1.215 20 H -0.206 1.206 21 H -0.217 1.217 22 C 0.024 3.976 23 C 0.020 3.980 24 H 0.079 0.921 25 O -0.372 6.372 26 N -0.237 5.237 27 C 0.049 3.951 28 N -0.297 5.297 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.184 0.816 33 H 0.251 0.749 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.047 0.953 37 H 0.046 0.954 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.089 0.911 41 H 0.224 0.776 42 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -16.073 -15.407 -6.261 23.128 hybrid contribution 0.487 0.454 0.995 1.197 sum -15.586 -14.954 -5.266 22.232 Atomic orbital electron populations 1.23016 0.76198 1.03670 1.02966 1.86264 1.23716 1.23594 1.86535 1.20041 0.89231 0.85209 0.88020 1.21914 0.92699 1.00653 1.05646 1.21472 0.95094 0.88642 0.92996 1.17650 0.85194 0.84155 0.77956 1.90810 1.61368 1.38101 1.49861 1.45889 1.08859 1.07934 1.71937 1.21555 0.78314 0.96671 1.02707 1.22385 0.96285 0.93583 1.00088 0.89284 1.21386 0.92778 0.92426 0.92005 1.44300 1.18406 1.46370 1.23636 1.19020 1.14590 1.08854 0.93487 0.90435 1.24856 0.99720 0.97894 0.97852 1.69940 1.25468 1.32396 1.28703 0.86124 0.77864 0.78798 0.82893 1.21460 1.20626 1.21660 1.22052 0.94553 0.90371 0.90592 1.23328 0.92165 0.99792 0.82744 0.92064 1.86386 1.27066 1.96305 1.27485 1.68401 1.06696 1.32885 1.15745 1.24749 0.87986 0.93856 0.88468 1.68067 1.42020 0.99342 1.20277 0.91749 0.91770 0.87979 0.81616 0.74883 0.90673 0.90792 0.95339 0.95447 0.93581 0.94450 0.91062 0.77625 0.77532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.41 101.05 1.05 1.26 16 2 O -0.30 -2.75 10.49 -18.21 -0.19 -2.94 16 3 C 0.36 3.79 7.54 -16.67 -0.13 3.66 16 4 C -0.18 -2.08 9.68 -38.72 -0.37 -2.45 16 5 C 0.16 1.99 6.79 -82.70 -0.56 1.43 16 6 C 0.57 8.05 7.83 -12.05 -0.09 7.95 16 7 O -0.53 -8.72 16.42 5.38 0.09 -8.63 16 8 N -0.70 -9.51 5.39 -61.06 -0.33 -9.84 16 9 C 0.13 1.94 5.01 -4.04 -0.02 1.92 16 10 C -0.10 -1.77 2.74 -88.79 -0.24 -2.01 16 11 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 12 C 0.14 2.79 6.52 -3.07 -0.02 2.77 16 13 N -0.60 -14.91 3.39 -169.94 -0.58 -15.49 16 14 C -0.23 -6.32 10.24 -15.06 -0.15 -6.48 16 15 H 0.08 2.06 7.85 -52.48 -0.41 1.64 16 16 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 17 N -0.92 -26.41 10.68 55.49 0.59 -25.82 16 18 Si 0.91 21.72 29.56 -169.99 -5.03 16.69 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 C 0.15 3.50 5.16 -2.41 -0.01 3.49 16 23 C 0.08 1.46 3.89 -24.47 -0.10 1.37 16 24 H 0.06 1.07 8.05 -51.93 -0.42 0.66 16 25 O -0.57 -9.45 13.47 -35.23 -0.47 -9.92 16 26 N -0.52 -5.75 9.70 -11.20 -0.11 -5.86 16 27 C 0.34 3.07 12.27 -92.30 -1.13 1.94 16 28 N -0.57 -5.54 9.36 -14.64 -0.14 -5.68 16 29 H 0.06 0.37 8.12 -51.93 -0.42 -0.05 16 30 H 0.06 0.36 8.12 -51.93 -0.42 -0.06 16 31 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.17 1.77 7.73 -52.49 -0.41 1.36 16 33 H 0.41 5.29 7.71 -40.82 -0.31 4.97 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 36 H 0.03 0.56 7.77 -51.93 -0.40 0.16 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 40 H 0.07 1.82 6.95 -51.93 -0.36 1.46 16 41 H 0.38 4.81 9.12 45.56 0.42 5.22 16 42 H 0.21 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 359.74 15.07 5.42 5.42 Total: -1.00 -33.21 359.74 -7.45 -40.66 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -4.83 Total: 6.83 kcal Atomic # 6 Polarization: 16.46 SS G_CDS: -1.88 Total: 14.58 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: -0.56 Total: -62.69 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.58 Total: -21.49 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.21 -7.45 -40.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958072880.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.108 kcal (2) G-P(sol) polarization free energy of solvation -33.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds