Wall clock time and date at job start Fri Apr 10 2020 18:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35505 * 117.00521 * 2 1 4 4 C 1.39648 * 120.49474 * 180.27626 * 3 2 1 5 5 C 1.39143 * 118.20236 * 180.26406 * 4 3 2 6 6 C 1.48445 * 120.51570 * 179.74311 * 5 4 3 7 7 O 1.21479 * 119.99980 * 359.71953 * 6 5 4 8 8 N 1.34781 * 120.00343 * 179.72561 * 6 5 4 9 9 C 1.46495 * 120.00183 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47321 * 179.97438 * 9 8 6 11 11 H 1.08996 * 110.64128 * 303.31902 * 10 9 8 12 12 C 1.54325 * 110.71718 * 66.45279 * 10 9 8 13 13 N 1.47018 * 107.27099 * 140.73458 * 12 10 9 14 14 C 1.36941 * 125.65333 * 181.01921 * 13 12 10 15 15 H 1.08003 * 119.99654 * 10.75826 * 14 13 12 16 16 C 1.38811 * 120.00604 * 190.74952 * 14 13 12 17 17 N 1.31621 * 119.99472 * 9.07328 * 16 14 13 18 18 Si 1.86802 * 120.00075 * 189.06828 * 16 14 13 19 19 H 1.48497 * 109.46995 * 84.99393 * 18 16 14 20 20 H 1.48497 * 109.47222 * 324.99067 * 18 16 14 21 21 H 1.48502 * 109.46692 * 204.99429 * 18 16 14 22 22 C 1.47428 * 108.70261 * 1.29115 * 13 12 10 23 23 C 1.55124 * 104.71992 * 335.55012 * 22 13 12 24 24 H 1.09006 * 111.19065 * 279.19363 * 23 22 13 25 25 O 1.42905 * 110.93980 * 155.29276 * 23 22 13 26 26 N 1.33279 * 118.96985 * 359.46697 * 5 4 3 27 27 C 1.31532 * 120.88561 * 0.28042 * 26 5 4 28 28 N 1.31891 * 121.98637 * 359.97438 * 27 26 5 29 29 H 1.09005 * 109.46945 * 299.99872 * 1 2 3 30 30 H 1.08993 * 109.47253 * 59.99187 * 1 2 3 31 31 H 1.09004 * 109.47569 * 180.02562 * 1 2 3 32 32 H 1.08000 * 120.89757 * 0.02562 * 4 3 2 33 33 H 0.96999 * 119.99502 * 359.97438 * 8 6 5 34 34 H 1.09003 * 109.47316 * 59.99576 * 9 8 6 35 35 H 1.09004 * 109.47201 * 299.99957 * 9 8 6 36 36 H 1.09003 * 109.88667 * 21.31809 * 12 10 9 37 37 H 1.09003 * 110.01476 * 260.22446 * 12 10 9 38 38 H 0.96997 * 119.99379 * 180.02562 * 17 16 14 39 39 H 1.08991 * 110.36854 * 94.48382 * 22 13 12 40 40 H 1.08999 * 110.36513 * 216.80406 * 22 13 12 41 41 H 0.96703 * 114.00004 * 67.95673 * 25 23 22 42 42 H 1.08000 * 119.00733 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 3.4381 1.2923 -0.0058 5 6 4.0199 2.5563 0.0001 6 6 5.4967 2.7063 0.0001 7 8 6.2073 1.7211 0.0001 8 7 6.0492 3.9357 0.0003 9 6 7.5067 4.0837 0.0008 10 6 7.8684 5.5704 0.0003 11 1 7.4151 6.0757 -0.8525 12 6 7.4365 6.2378 1.3231 13 7 8.4954 7.1855 1.6998 14 6 8.5043 7.9667 2.8245 15 1 7.7799 7.7949 3.6070 16 6 9.4444 8.9791 2.9592 17 7 10.2089 9.3070 1.9392 18 14 9.6242 9.8762 4.5878 19 1 10.5322 9.1090 5.4778 20 1 8.2923 10.0051 5.2316 21 1 10.1911 11.2277 4.3484 22 6 9.5431 7.1605 0.6629 23 6 9.4076 5.7649 -0.0007 24 1 9.8990 4.9958 0.5953 25 8 9.9209 5.7816 -1.3343 26 7 3.2305 3.6302 0.0002 27 6 1.9211 3.5057 0.0003 28 7 1.3315 2.3260 -0.0002 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8898 31 1 -0.3634 -1.0277 0.0005 32 1 4.0481 0.4011 -0.0108 33 1 5.4818 4.7224 0.0000 34 1 7.9205 3.6092 -0.8889 35 1 7.9198 3.6093 0.8910 36 1 7.3222 5.4817 2.0998 37 1 6.4956 6.7699 1.1827 38 1 10.8660 10.0142 2.0334 39 1 9.3712 7.9495 -0.0691 40 1 10.5282 7.2705 1.1162 41 1 10.8792 5.9008 -1.3855 42 1 1.3104 4.3965 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958072880.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:37 Heat of formation + Delta-G solvation = -66.998336 kcal Electronic energy + Delta-G solvation = -26479.918226 eV Core-core repulsion = 22460.670934 eV Total energy + Delta-G solvation = -4019.247292 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -42.50343 -40.88425 -39.83091 -39.38702 -36.65976 -36.22173 -34.64775 -33.94497 -32.97746 -31.48143 -29.36894 -28.68619 -27.48143 -26.20561 -25.39745 -24.62922 -22.54916 -21.87984 -21.35067 -19.97169 -19.42694 -18.84350 -18.37416 -17.47194 -17.40221 -17.07834 -16.93096 -16.61135 -16.58368 -15.99178 -15.77147 -15.74615 -15.33229 -15.10651 -14.80807 -14.71624 -14.37024 -14.04275 -13.64737 -13.31609 -13.05140 -12.99170 -12.77824 -12.71670 -12.40706 -12.32707 -12.01312 -11.92850 -11.86036 -11.74031 -11.55339 -11.36122 -10.83623 -10.71594 -10.63052 -10.36311 -10.21178 -8.88992 -7.89384 -5.25727 -0.71702 -0.14971 1.47322 1.49085 1.51898 1.56056 1.57170 2.01618 2.47998 2.66115 2.77190 2.94276 3.19608 3.29903 3.52569 3.60614 3.74196 3.76618 3.89846 4.03512 4.10375 4.39719 4.39795 4.41600 4.44835 4.46991 4.58787 4.70372 4.73440 4.89177 4.97101 4.99313 5.17953 5.30248 5.39260 5.49487 5.52567 5.67114 5.92219 6.16889 6.29771 6.78262 6.89928 6.93831 7.05951 7.72566 8.37899 9.21923 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018598 B = 0.002513 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.203722 B =11140.505329 C =12170.928834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.306 6.306 3 C 0.363 3.637 4 C -0.191 4.191 5 C 0.152 3.848 6 C 0.570 3.430 7 O -0.554 6.554 8 N -0.691 5.691 9 C 0.143 3.857 10 C -0.088 4.088 11 H 0.091 0.909 12 C 0.139 3.861 13 N -0.622 5.622 14 C -0.244 4.244 15 H 0.082 0.918 16 C -0.062 4.062 17 N -0.948 5.948 18 Si 0.978 3.022 19 H -0.284 1.284 20 H -0.269 1.269 21 H -0.295 1.295 22 C 0.157 3.843 23 C 0.098 3.902 24 H 0.075 0.925 25 O -0.568 6.568 26 N -0.527 5.527 27 C 0.340 3.660 28 N -0.564 5.564 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.128 0.872 32 H 0.166 0.834 33 H 0.420 0.580 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.036 0.964 37 H 0.032 0.968 38 H 0.249 0.751 39 H 0.003 0.997 40 H 0.041 0.959 41 H 0.395 0.605 42 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.479 -16.250 -6.072 24.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.210 6.210 3 C 0.174 3.826 4 C -0.216 4.216 5 C 0.008 3.992 6 C 0.354 3.646 7 O -0.431 6.431 8 N -0.342 5.342 9 C 0.020 3.980 10 C -0.107 4.107 11 H 0.109 0.891 12 C 0.014 3.986 13 N -0.350 5.350 14 C -0.373 4.373 15 H 0.100 0.900 16 C -0.256 4.256 17 N -0.596 5.596 18 Si 0.806 3.194 19 H -0.211 1.211 20 H -0.194 1.194 21 H -0.222 1.222 22 C 0.031 3.969 23 C 0.037 3.963 24 H 0.093 0.907 25 O -0.375 6.375 26 N -0.248 5.248 27 C 0.053 3.947 28 N -0.296 5.296 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.146 0.854 32 H 0.183 0.817 33 H 0.258 0.742 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.021 0.979 40 H 0.059 0.941 41 H 0.244 0.756 42 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -17.910 -16.392 -6.143 25.044 hybrid contribution 0.948 0.725 0.923 1.508 sum -16.962 -15.668 -5.220 23.674 Atomic orbital electron populations 1.23294 0.74356 1.05550 1.03154 1.86264 1.25534 1.23048 1.86114 1.20122 0.89091 0.85850 0.87531 1.21929 0.93338 1.00327 1.05996 1.21182 0.94134 0.89457 0.94407 1.17878 0.86034 0.83642 0.77081 1.90790 1.62316 1.38875 1.51163 1.45793 1.08375 1.08213 1.71778 1.21324 0.79134 0.94697 1.02863 1.22211 0.95213 0.94800 0.98489 0.89053 1.21518 0.91738 0.91724 0.93615 1.44593 1.20262 1.46699 1.23401 1.19396 1.14404 1.08999 0.94518 0.90041 1.25675 0.99808 0.99109 1.01016 1.70135 1.26077 1.32881 1.30481 0.85106 0.78093 0.77110 0.79083 1.21117 1.19396 1.22168 1.21847 0.92818 0.92615 0.89640 1.23009 0.93380 0.96644 0.83255 0.90687 1.86360 1.28937 1.96029 1.26159 1.68409 1.07548 1.32470 1.16406 1.25501 0.87577 0.94780 0.86860 1.68173 1.41817 0.99381 1.20191 0.91587 0.91474 0.85367 0.81681 0.74247 0.90146 0.91043 0.94629 0.94999 0.94192 0.97902 0.94107 0.75563 0.74005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.41 113.37 1.18 1.47 16 2 O -0.31 -5.18 10.49 -88.07 -0.92 -6.11 16 3 C 0.36 7.06 7.54 84.91 0.64 7.70 16 4 C -0.19 -4.15 9.68 22.83 0.22 -3.93 16 5 C 0.15 3.58 6.79 41.86 0.28 3.87 16 6 C 0.57 15.63 7.83 86.96 0.68 16.32 16 7 O -0.55 -18.05 16.42 -3.65 -0.06 -18.11 16 8 N -0.69 -17.95 5.39 -465.39 -2.51 -20.46 16 9 C 0.14 4.03 5.01 86.38 0.43 4.46 16 10 C -0.09 -2.87 2.74 -9.61 -0.03 -2.90 16 11 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 12 C 0.14 5.42 6.52 86.73 0.57 5.99 16 13 N -0.62 -31.17 3.39 -691.56 -2.35 -33.52 16 14 C -0.24 -13.44 10.24 84.03 0.86 -12.58 16 15 H 0.08 4.30 7.85 -2.91 -0.02 4.27 16 16 C -0.06 -3.50 5.40 84.86 0.46 -3.04 16 17 N -0.95 -55.95 10.68 21.65 0.23 -55.72 16 18 Si 0.98 44.97 29.56 68.60 2.03 47.00 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 21 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 22 C 0.16 7.47 5.16 86.93 0.45 7.92 16 23 C 0.10 3.49 3.89 32.06 0.12 3.62 16 24 H 0.08 2.52 8.05 -2.38 -0.02 2.50 16 25 O -0.57 -18.10 13.47 -148.98 -2.01 -20.10 16 26 N -0.53 -10.86 9.70 -189.36 -1.84 -12.69 16 27 C 0.34 5.40 12.27 180.93 2.22 7.62 16 28 N -0.56 -9.90 9.36 -313.00 -2.93 -12.83 16 29 H 0.07 0.62 8.12 -2.38 -0.02 0.60 16 30 H 0.07 0.62 8.12 -2.39 -0.02 0.60 16 31 H 0.13 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.17 3.49 7.73 -2.91 -0.02 3.47 16 33 H 0.42 10.07 7.71 -92.71 -0.71 9.35 16 34 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.07 2.09 8.06 -2.39 -0.02 2.07 16 36 H 0.04 1.35 7.77 -2.39 -0.02 1.34 16 37 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 39 H 0.00 0.16 8.07 -2.39 -0.02 0.14 16 40 H 0.04 2.16 6.95 -2.39 -0.02 2.14 16 41 H 0.39 9.53 9.12 -74.05 -0.68 8.85 16 42 H 0.24 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -72.01 359.74 -2.58 -74.60 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -0.32 Total: 21.43 kcal Atomic # 6 Polarization: 28.43 SS G_CDS: 8.09 Total: 36.52 kcal Atomic # 7 Polarization: -125.83 SS G_CDS: -9.39 Total: -135.22 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -2.99 Total: -44.32 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -72.01 -2.58 -74.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958072880.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.599 kcal (2) G-P(sol) polarization free energy of solvation -72.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds