Wall clock time and date at job start Fri Apr 10 2020 18:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35723 * 117.00389 * 2 1 4 4 C 1.39442 * 120.81251 * 179.97438 * 3 2 1 5 5 N 1.31961 * 119.08699 * 180.02562 * 4 3 2 6 6 C 1.32543 * 120.83334 * 0.02562 * 5 4 3 7 7 C 1.48293 * 119.10888 * 179.97438 * 6 5 4 8 8 O 1.21503 * 120.00044 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99577 * 180.27224 * 7 6 5 10 10 C 1.46505 * 119.99722 * 179.71990 * 9 7 6 11 11 C 1.52999 * 109.47189 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.63779 * 308.14766 * 11 10 9 13 13 C 1.54323 * 110.71796 * 71.48016 * 11 10 9 14 14 N 1.47020 * 107.26779 * 140.56171 * 13 11 10 15 15 C 1.36943 * 125.64860 * 181.01655 * 14 13 11 16 16 H 1.08003 * 119.99627 * 0.02562 * 15 14 13 17 17 C 1.38813 * 120.00233 * 180.02562 * 15 14 13 18 18 N 1.31622 * 119.99491 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99953 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47099 * 90.00104 * 19 17 15 21 21 H 1.48498 * 109.47178 * 209.99819 * 19 17 15 22 22 H 1.48496 * 109.47291 * 329.99981 * 19 17 15 23 23 C 1.47421 * 108.70782 * 1.05607 * 14 13 11 24 24 C 1.54912 * 104.83149 * 335.87661 * 23 14 13 25 25 H 1.08997 * 111.04409 * 155.09580 * 24 23 14 26 26 O 1.42908 * 111.00520 * 278.93606 * 24 23 14 27 27 N 1.32536 * 121.77472 * 0.27133 * 6 5 4 28 28 C 1.31953 * 120.84138 * 359.44391 * 27 6 5 29 29 H 1.08993 * 109.47249 * 300.00337 * 1 2 3 30 30 H 1.09008 * 109.46691 * 60.00601 * 1 2 3 31 31 H 1.09005 * 109.47200 * 180.02562 * 1 2 3 32 32 H 1.08003 * 120.46097 * 359.97438 * 4 3 2 33 33 H 0.97000 * 120.00483 * 359.72874 * 9 7 6 34 34 H 1.08995 * 109.47192 * 300.00563 * 10 9 7 35 35 H 1.09001 * 109.46711 * 60.00584 * 10 9 7 36 36 H 1.09008 * 109.88291 * 259.97217 * 13 11 10 37 37 H 1.08990 * 109.88208 * 21.14025 * 13 11 10 38 38 H 0.97001 * 119.99257 * 179.97438 * 18 17 15 39 39 H 1.08999 * 110.37223 * 217.04084 * 23 14 13 40 40 H 1.09000 * 110.46020 * 94.75583 * 23 14 13 41 41 H 0.96695 * 113.99234 * 292.19357 * 26 24 23 42 42 H 1.08000 * 120.46233 * 180.25070 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 3.4366 1.3019 0.0005 5 7 4.0001 2.4951 0.0010 6 6 3.2611 3.5954 0.0015 7 6 3.9344 4.9167 0.0027 8 8 5.1478 4.9802 0.0036 9 7 3.2003 6.0470 0.0087 10 6 3.8655 7.3523 0.0161 11 6 2.8118 8.4616 0.0226 12 1 2.0902 8.3108 -0.7804 13 6 2.1037 8.5339 1.3919 14 7 1.9064 9.9564 1.7066 15 6 1.3287 10.4490 2.8463 16 1 0.9726 9.7708 3.6077 17 6 1.2006 11.8199 3.0229 18 7 1.6351 12.6463 2.0952 19 14 0.4119 12.4917 4.5772 20 1 1.4573 12.7069 5.6096 21 1 -0.2579 13.7820 4.2745 22 1 -0.5908 11.5203 5.0831 23 6 2.4328 10.7648 0.5918 24 6 3.4818 9.8560 -0.0962 25 1 3.6177 10.1364 -1.1407 26 8 4.7262 9.8877 0.6058 27 7 1.9366 3.5465 0.0069 28 6 1.3024 2.3895 0.0010 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 4.0448 0.4094 0.0014 33 1 2.2316 5.9963 0.0084 34 1 4.4881 7.4378 0.9066 35 1 4.4883 7.4476 -0.8734 36 1 1.1390 8.0291 1.3375 37 1 2.7257 8.0679 2.1559 38 1 1.5453 13.6042 2.2184 39 1 2.9059 11.6708 0.9704 40 1 1.6343 11.0176 -0.1057 41 1 5.1819 10.7393 0.5599 42 1 0.2229 2.3568 0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958244063.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:44 Heat of formation + Delta-G solvation = -29.503722 kcal Electronic energy + Delta-G solvation = -26640.971635 eV Core-core repulsion = 22623.350232 eV Total energy + Delta-G solvation = -4017.621403 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -41.79334 -39.72310 -38.82802 -38.06810 -35.01264 -34.56628 -34.12640 -32.25347 -31.62653 -29.69529 -28.39666 -27.67418 -25.82495 -25.12335 -24.56263 -23.23234 -21.15383 -20.25644 -19.73467 -18.81902 -18.54106 -18.19807 -17.26966 -16.69291 -16.37756 -15.80113 -15.53225 -15.40784 -15.03345 -14.82037 -14.51291 -14.15237 -14.01994 -13.80873 -13.70915 -13.07632 -12.91458 -12.67486 -12.32992 -12.14944 -11.92609 -11.88887 -11.40549 -11.35235 -11.22716 -10.78686 -10.64472 -10.35835 -10.28351 -10.03665 -9.84374 -9.79875 -9.68864 -9.25862 -9.07984 -8.87354 -8.66296 -6.81984 -5.67286 -3.06976 0.15062 0.56016 2.40059 2.52581 2.82106 3.40113 3.45086 3.46627 3.57572 3.58286 3.70783 4.10505 4.20858 4.48134 4.52850 4.53770 4.72585 4.79236 4.90671 5.16239 5.17624 5.35311 5.42345 5.53454 5.54979 5.64677 5.93693 6.07900 6.14191 6.21825 6.36357 6.44988 6.51830 6.56102 6.68270 6.89198 7.30478 7.33941 7.59689 7.68982 7.77422 8.19783 8.26360 8.40102 9.20659 9.82022 10.46189 11.37699 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016971 B = 0.002629 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.449331 B =10648.582703 C =11831.437853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.298 6.298 3 C 0.041 3.959 4 C 0.123 3.877 5 N -0.428 5.428 6 C 0.246 3.754 7 C 0.584 3.416 8 O -0.509 6.509 9 N -0.704 5.704 10 C 0.140 3.860 11 C -0.106 4.106 12 H 0.087 0.913 13 C 0.144 3.856 14 N -0.598 5.598 15 C -0.217 4.217 16 H 0.077 0.923 17 C -0.013 4.013 18 N -0.926 5.926 19 Si 0.915 3.085 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.126 3.874 24 C 0.082 3.918 25 H 0.055 0.945 26 O -0.557 6.557 27 N -0.454 5.454 28 C 0.065 3.935 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.184 0.816 33 H 0.410 0.590 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.021 0.979 37 H 0.029 0.971 38 H 0.251 0.749 39 H 0.112 0.888 40 H 0.019 0.981 41 H 0.375 0.625 42 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.302 -22.307 -8.226 23.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.208 6.208 3 C -0.010 4.010 4 C -0.047 4.047 5 N -0.142 5.142 6 C -0.023 4.023 7 C 0.364 3.636 8 O -0.381 6.381 9 N -0.356 5.356 10 C 0.018 3.982 11 C -0.125 4.125 12 H 0.105 0.895 13 C 0.018 3.982 14 N -0.324 5.324 15 C -0.345 4.345 16 H 0.095 0.905 17 C -0.208 4.208 18 N -0.576 5.576 19 Si 0.746 3.254 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.208 1.208 23 C 0.001 3.999 24 C 0.022 3.978 25 H 0.073 0.927 26 O -0.363 6.363 27 N -0.171 5.171 28 C -0.103 4.103 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.128 0.872 32 H 0.201 0.799 33 H 0.246 0.754 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.038 0.962 37 H 0.047 0.953 38 H 0.062 0.938 39 H 0.129 0.871 40 H 0.037 0.963 41 H 0.222 0.778 42 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -1.099 -21.947 -7.978 23.378 hybrid contribution -1.717 0.086 0.635 1.833 sum -2.816 -21.861 -7.343 23.233 Atomic orbital electron populations 1.23281 0.77177 1.05136 1.02100 1.86090 1.22330 1.24878 1.87525 1.21239 0.95261 0.86910 0.97595 1.22913 0.89272 0.96342 0.96130 1.68293 1.39766 0.97552 1.08620 1.22854 0.86026 0.94426 0.99024 1.17065 0.86300 0.81834 0.78362 1.90824 1.12658 1.86197 1.48424 1.45925 1.11113 1.05402 1.73163 1.21352 0.94819 0.78805 1.03260 1.22510 0.96678 0.93582 0.99740 0.89459 1.21327 0.96077 0.88203 0.92560 1.44346 1.70199 0.99068 1.18745 1.19092 1.30417 0.90622 0.94367 0.90498 1.24759 1.01753 0.95785 0.98519 1.69750 1.52445 1.01955 1.33401 0.86051 0.78725 0.78240 0.82371 1.21597 1.21701 1.20780 1.22581 0.93046 0.95581 0.88688 1.23212 0.85571 0.95194 0.93866 0.92717 1.86398 1.34445 1.38232 1.77179 1.68153 1.10253 1.29090 1.09607 1.23476 1.01419 0.86588 0.98798 0.91828 0.91885 0.87249 0.79881 0.75420 0.89836 0.91293 0.96161 0.95336 0.93779 0.87060 0.96316 0.77808 0.80493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 9.84 101.05 0.99 1.05 16 2 O -0.30 -1.92 10.51 -18.88 -0.20 -2.12 16 3 C 0.04 0.34 6.75 -38.68 -0.26 0.08 16 4 C 0.12 1.18 11.28 -17.05 -0.19 0.98 16 5 N -0.43 -5.77 10.11 -11.03 -0.11 -5.88 16 6 C 0.25 3.46 7.59 -157.05 -1.19 2.27 16 7 C 0.58 9.51 7.84 -12.12 -0.10 9.41 16 8 O -0.51 -9.93 16.86 5.36 0.09 -9.84 16 9 N -0.70 -10.47 5.46 -61.10 -0.33 -10.81 16 10 C 0.14 2.29 4.50 -4.04 -0.02 2.27 16 11 C -0.11 -1.82 2.89 -88.79 -0.26 -2.08 16 12 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 13 C 0.14 3.03 6.75 -3.07 -0.02 3.01 16 14 N -0.60 -15.26 3.39 -170.07 -0.58 -15.84 16 15 C -0.22 -6.06 10.27 -15.06 -0.15 -6.22 16 16 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 17 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 18 N -0.93 -26.65 10.09 55.49 0.56 -26.09 16 19 Si 0.92 22.13 29.55 -169.99 -5.02 17.11 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.13 2.97 5.62 -2.53 -0.01 2.95 16 24 C 0.08 1.52 4.17 -24.58 -0.10 1.42 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 O -0.56 -10.37 12.33 -35.23 -0.43 -10.80 16 27 N -0.45 -5.35 9.55 -11.03 -0.11 -5.46 16 28 C 0.07 0.56 10.31 -17.05 -0.18 0.38 16 29 H 0.06 0.14 7.71 -51.93 -0.40 -0.26 16 30 H 0.06 0.12 7.71 -51.92 -0.40 -0.28 16 31 H 0.11 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.18 1.17 8.06 -52.48 -0.42 0.75 16 33 H 0.41 5.48 7.76 -40.82 -0.32 5.16 16 34 H 0.08 1.57 7.51 -51.93 -0.39 1.18 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 37 H 0.03 0.63 7.68 -51.93 -0.40 0.23 16 38 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.11 2.93 5.87 -51.93 -0.31 2.62 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.38 5.69 9.12 45.56 0.42 6.11 16 42 H 0.18 0.88 6.47 -52.49 -0.34 0.54 16 LS Contribution 355.36 15.07 5.36 5.36 Total: -1.00 -35.61 355.36 -7.00 -42.61 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -4.64 Total: 6.70 kcal Atomic # 6 Polarization: 16.64 SS G_CDS: -1.58 Total: 15.06 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: -0.57 Total: -64.08 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.54 Total: -22.75 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.61 -7.00 -42.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958244063.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.108 kcal (2) G-P(sol) polarization free energy of solvation -35.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds