Wall clock time and date at job start Fri Apr 10 2020 18:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35723 * 117.00389 * 2 1 4 4 C 1.39442 * 120.81251 * 179.97438 * 3 2 1 5 5 N 1.31961 * 119.08699 * 180.02562 * 4 3 2 6 6 C 1.32543 * 120.83334 * 0.02562 * 5 4 3 7 7 C 1.48293 * 119.10888 * 179.97438 * 6 5 4 8 8 O 1.21503 * 120.00044 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99577 * 180.27224 * 7 6 5 10 10 C 1.46505 * 119.99722 * 179.71990 * 9 7 6 11 11 C 1.52999 * 109.47189 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.63779 * 308.14766 * 11 10 9 13 13 C 1.54323 * 110.71796 * 71.48016 * 11 10 9 14 14 N 1.47020 * 107.26779 * 140.56171 * 13 11 10 15 15 C 1.36943 * 125.64860 * 181.01655 * 14 13 11 16 16 H 1.08003 * 119.99627 * 0.02562 * 15 14 13 17 17 C 1.38813 * 120.00233 * 180.02562 * 15 14 13 18 18 N 1.31622 * 119.99491 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99953 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47099 * 90.00104 * 19 17 15 21 21 H 1.48498 * 109.47178 * 209.99819 * 19 17 15 22 22 H 1.48496 * 109.47291 * 329.99981 * 19 17 15 23 23 C 1.47421 * 108.70782 * 1.05607 * 14 13 11 24 24 C 1.54912 * 104.83149 * 335.87661 * 23 14 13 25 25 H 1.08997 * 111.04409 * 155.09580 * 24 23 14 26 26 O 1.42908 * 111.00520 * 278.93606 * 24 23 14 27 27 N 1.32536 * 121.77472 * 0.27133 * 6 5 4 28 28 C 1.31953 * 120.84138 * 359.44391 * 27 6 5 29 29 H 1.08993 * 109.47249 * 300.00337 * 1 2 3 30 30 H 1.09008 * 109.46691 * 60.00601 * 1 2 3 31 31 H 1.09005 * 109.47200 * 180.02562 * 1 2 3 32 32 H 1.08003 * 120.46097 * 359.97438 * 4 3 2 33 33 H 0.97000 * 120.00483 * 359.72874 * 9 7 6 34 34 H 1.08995 * 109.47192 * 300.00563 * 10 9 7 35 35 H 1.09001 * 109.46711 * 60.00584 * 10 9 7 36 36 H 1.09008 * 109.88291 * 259.97217 * 13 11 10 37 37 H 1.08990 * 109.88208 * 21.14025 * 13 11 10 38 38 H 0.97001 * 119.99257 * 179.97438 * 18 17 15 39 39 H 1.08999 * 110.37223 * 217.04084 * 23 14 13 40 40 H 1.09000 * 110.46020 * 94.75583 * 23 14 13 41 41 H 0.96695 * 113.99234 * 292.19357 * 26 24 23 42 42 H 1.08000 * 120.46233 * 180.25070 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 3.4366 1.3019 0.0005 5 7 4.0001 2.4951 0.0010 6 6 3.2611 3.5954 0.0015 7 6 3.9344 4.9167 0.0027 8 8 5.1478 4.9802 0.0036 9 7 3.2003 6.0470 0.0087 10 6 3.8655 7.3523 0.0161 11 6 2.8118 8.4616 0.0226 12 1 2.0902 8.3108 -0.7804 13 6 2.1037 8.5339 1.3919 14 7 1.9064 9.9564 1.7066 15 6 1.3287 10.4490 2.8463 16 1 0.9726 9.7708 3.6077 17 6 1.2006 11.8199 3.0229 18 7 1.6351 12.6463 2.0952 19 14 0.4119 12.4917 4.5772 20 1 1.4573 12.7069 5.6096 21 1 -0.2579 13.7820 4.2745 22 1 -0.5908 11.5203 5.0831 23 6 2.4328 10.7648 0.5918 24 6 3.4818 9.8560 -0.0962 25 1 3.6177 10.1364 -1.1407 26 8 4.7262 9.8877 0.6058 27 7 1.9366 3.5465 0.0069 28 6 1.3024 2.3895 0.0010 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 4.0448 0.4094 0.0014 33 1 2.2316 5.9963 0.0084 34 1 4.4881 7.4378 0.9066 35 1 4.4883 7.4476 -0.8734 36 1 1.1390 8.0291 1.3375 37 1 2.7257 8.0679 2.1559 38 1 1.5453 13.6042 2.2184 39 1 2.9059 11.6708 0.9704 40 1 1.6343 11.0176 -0.1057 41 1 5.1819 10.7393 0.5599 42 1 0.2229 2.3568 0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958244063.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:42 Heat of formation + Delta-G solvation = -59.505581 kcal Electronic energy + Delta-G solvation = -26642.272614 eV Core-core repulsion = 22623.350232 eV Total energy + Delta-G solvation = -4018.922382 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.57712 -40.81583 -39.87688 -39.33343 -36.33882 -36.22277 -35.07017 -33.96260 -32.55653 -31.29302 -29.50060 -28.73429 -27.34413 -26.20237 -25.59069 -24.55094 -22.47540 -21.84401 -21.20471 -19.62910 -19.28005 -19.16120 -19.03733 -18.00312 -17.28525 -16.98912 -16.78978 -16.54968 -16.34880 -15.91798 -15.64826 -15.57490 -15.24025 -14.98958 -14.67700 -14.48421 -14.38065 -13.92990 -13.66384 -13.46567 -13.16347 -13.03066 -12.63888 -12.56143 -12.46521 -12.34308 -12.23425 -12.03175 -11.86599 -11.81792 -11.68889 -11.22616 -10.79342 -10.64552 -10.48582 -10.24518 -9.84019 -8.84304 -7.77707 -5.19854 -0.68946 -0.14793 1.46453 1.47503 1.48470 1.56599 1.64564 1.99512 2.49698 2.64805 2.76498 3.03681 3.23705 3.30024 3.38780 3.61286 3.62723 3.85986 3.91524 3.97367 4.02674 4.31523 4.38969 4.44860 4.55583 4.60991 4.65077 4.77284 4.83161 4.86847 4.92445 5.01722 5.25301 5.35530 5.41448 5.52398 5.55065 5.79127 5.97060 6.26741 6.30867 6.74746 6.98752 7.03302 7.12709 7.79147 8.42065 9.24472 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016971 B = 0.002629 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.449331 B =10648.582703 C =11831.437853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.300 6.300 3 C 0.066 3.934 4 C 0.111 3.889 5 N -0.458 5.458 6 C 0.216 3.784 7 C 0.582 3.418 8 O -0.552 6.552 9 N -0.694 5.694 10 C 0.155 3.845 11 C -0.090 4.090 12 H 0.116 0.884 13 C 0.142 3.858 14 N -0.620 5.620 15 C -0.236 4.236 16 H 0.076 0.924 17 C -0.066 4.066 18 N -0.947 5.947 19 Si 0.978 3.022 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.271 1.271 23 C 0.127 3.873 24 C 0.094 3.906 25 H 0.092 0.908 26 O -0.570 6.570 27 N -0.460 5.460 28 C 0.063 3.937 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.130 0.870 32 H 0.210 0.790 33 H 0.418 0.582 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.031 0.969 37 H 0.012 0.988 38 H 0.247 0.753 39 H 0.080 0.920 40 H 0.003 0.997 41 H 0.389 0.611 42 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.000 -24.503 -8.842 26.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.209 6.209 3 C 0.013 3.987 4 C -0.057 4.057 5 N -0.173 5.173 6 C -0.052 4.052 7 C 0.365 3.635 8 O -0.428 6.428 9 N -0.346 5.346 10 C 0.031 3.969 11 C -0.109 4.109 12 H 0.134 0.866 13 C 0.017 3.983 14 N -0.346 5.346 15 C -0.365 4.365 16 H 0.093 0.907 17 C -0.258 4.258 18 N -0.598 5.598 19 Si 0.807 3.193 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.196 1.196 23 C 0.002 3.998 24 C 0.033 3.967 25 H 0.110 0.890 26 O -0.377 6.377 27 N -0.177 5.177 28 C -0.105 4.105 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.148 0.852 32 H 0.227 0.773 33 H 0.256 0.744 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.049 0.951 37 H 0.030 0.970 38 H 0.057 0.943 39 H 0.098 0.902 40 H 0.021 0.979 41 H 0.238 0.762 42 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -2.826 -24.175 -8.603 25.816 hybrid contribution -1.314 0.570 0.843 1.662 sum -4.140 -23.605 -7.760 25.191 Atomic orbital electron populations 1.23679 0.74881 1.07040 1.03375 1.86118 1.24590 1.23696 1.86485 1.21192 0.94875 0.87592 0.94996 1.23340 0.90584 0.95883 0.95924 1.68193 1.40979 0.98566 1.09591 1.22253 0.86925 0.93472 1.02523 1.17432 0.85927 0.82923 0.77192 1.90782 1.14453 1.87034 1.50525 1.45777 1.11417 1.04736 1.72699 1.21057 0.94241 0.79238 1.02333 1.22451 0.96876 0.93273 0.98345 0.86572 1.21434 0.96654 0.85954 0.94245 1.44651 1.70149 1.01191 1.18634 1.19415 1.30600 0.91082 0.95443 0.90661 1.25557 1.02700 0.96082 1.01451 1.69991 1.53238 1.01728 1.34801 0.85076 0.77898 0.77459 0.78888 1.21579 1.21765 1.19640 1.22452 0.93633 0.95587 0.88172 1.23120 0.84117 0.94490 0.94950 0.88996 1.86385 1.34315 1.39443 1.77557 1.68102 1.09155 1.30695 1.09782 1.24089 1.02977 0.85696 0.97703 0.90679 0.90406 0.85224 0.77343 0.74391 0.92645 0.90385 0.95072 0.96993 0.94298 0.90199 0.97897 0.76243 0.76804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 9.84 113.37 1.12 1.12 16 2 O -0.30 -2.83 10.51 -90.46 -0.95 -3.78 16 3 C 0.07 0.91 6.75 22.85 0.15 1.06 16 4 C 0.11 1.97 11.28 84.96 0.96 2.93 16 5 N -0.46 -12.29 10.11 -188.81 -1.91 -14.20 16 6 C 0.22 6.06 7.59 137.56 1.04 7.10 16 7 C 0.58 19.26 7.84 86.92 0.68 19.94 16 8 O -0.55 -22.26 16.86 -3.73 -0.06 -22.32 16 9 N -0.69 -20.38 5.46 -465.53 -2.54 -22.92 16 10 C 0.15 4.96 4.50 86.38 0.39 5.35 16 11 C -0.09 -2.99 2.89 -9.61 -0.03 -3.02 16 12 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 13 C 0.14 5.94 6.75 86.73 0.59 6.53 16 14 N -0.62 -32.03 3.39 -691.99 -2.35 -34.38 16 15 C -0.24 -13.42 10.27 84.03 0.86 -12.55 16 16 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 17 C -0.07 -3.72 5.49 84.86 0.47 -3.25 16 18 N -0.95 -55.62 10.09 21.65 0.22 -55.40 16 19 Si 0.98 45.89 29.55 68.60 2.03 47.92 16 20 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 21 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 C 0.13 6.01 5.62 86.86 0.49 6.50 16 24 C 0.09 3.36 4.17 31.99 0.13 3.49 16 25 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 26 O -0.57 -20.94 12.33 -148.98 -1.84 -22.78 16 27 N -0.46 -10.19 9.55 -188.81 -1.80 -11.99 16 28 C 0.06 0.91 10.31 84.97 0.88 1.78 16 29 H 0.07 0.01 7.71 -2.39 -0.02 -0.01 16 30 H 0.08 -0.04 7.71 -2.38 -0.02 -0.06 16 31 H 0.13 -0.24 8.14 -2.38 -0.02 -0.26 16 32 H 0.21 2.30 8.06 -2.91 -0.02 2.28 16 33 H 0.42 10.73 7.76 -92.71 -0.72 10.01 16 34 H 0.06 2.12 7.51 -2.39 -0.02 2.10 16 35 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.01 0.54 7.68 -2.39 -0.02 0.52 16 38 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 39 H 0.08 4.31 5.87 -2.39 -0.01 4.30 16 40 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 41 H 0.39 11.67 9.12 -74.06 -0.68 10.99 16 42 H 0.22 1.24 6.47 -2.91 -0.02 1.22 16 Total: -1.00 -79.95 355.36 -1.80 -81.75 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -0.31 Total: 21.11 kcal Atomic # 6 Polarization: 29.26 SS G_CDS: 7.73 Total: 36.99 kcal Atomic # 7 Polarization: -130.50 SS G_CDS: -8.38 Total: -138.88 kcal Atomic # 8 Polarization: -46.04 SS G_CDS: -2.85 Total: -48.89 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -79.95 -1.80 -81.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958244063.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.241 kcal (2) G-P(sol) polarization free energy of solvation -79.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds