Wall clock time and date at job start Fri Apr 10 2020 18:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35732 * 117.00009 * 2 1 4 4 C 1.39446 * 120.80641 * 179.97438 * 3 2 1 5 5 N 1.31959 * 119.08369 * 180.02562 * 4 3 2 6 6 C 1.32542 * 120.83553 * 359.97438 * 5 4 3 7 7 C 1.48294 * 119.11318 * 179.97438 * 6 5 4 8 8 O 1.21498 * 119.99862 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00151 * 180.27958 * 7 6 5 10 10 C 1.46495 * 120.00294 * 179.72595 * 9 7 6 11 11 C 1.52999 * 109.47593 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.88381 * 302.57485 * 11 10 9 13 13 C 1.54903 * 111.00517 * 66.44863 * 11 10 9 14 14 N 1.47418 * 104.83341 * 155.08871 * 13 11 10 15 15 C 1.36938 * 125.65134 * 155.84420 * 14 13 11 16 16 H 1.08007 * 119.99996 * 353.88090 * 15 14 13 17 17 C 1.38817 * 120.00240 * 173.89414 * 15 14 13 18 18 N 1.31613 * 120.00071 * 6.81497 * 17 15 14 19 19 Si 1.86796 * 119.99979 * 186.82392 * 17 15 14 20 20 H 1.48498 * 109.47209 * 94.97743 * 19 17 15 21 21 H 1.48500 * 109.47149 * 214.97932 * 19 17 15 22 22 H 1.48502 * 109.47252 * 334.98109 * 19 17 15 23 23 C 1.47021 * 108.70346 * 335.87254 * 14 13 11 24 24 C 1.54326 * 107.26936 * 1.05848 * 23 14 13 25 25 H 1.08998 * 110.71976 * 263.82911 * 24 23 14 26 26 O 1.42901 * 110.71691 * 140.55577 * 24 23 14 27 27 N 1.32539 * 121.77398 * 0.25943 * 6 5 4 28 28 C 1.31953 * 120.83825 * 359.48210 * 27 6 5 29 29 H 1.09002 * 109.47003 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47139 * 299.99730 * 1 2 3 31 31 H 1.09002 * 109.46669 * 59.99673 * 1 2 3 32 32 H 1.08001 * 120.46029 * 0.04735 * 4 3 2 33 33 H 0.97007 * 119.99649 * 359.71946 * 9 7 6 34 34 H 1.08997 * 109.46725 * 299.99901 * 10 9 7 35 35 H 1.09000 * 109.47259 * 59.99587 * 10 9 7 36 36 H 1.09003 * 110.37219 * 273.92617 * 13 11 10 37 37 H 1.09007 * 110.36829 * 36.24644 * 13 11 10 38 38 H 0.96995 * 120.00269 * 180.02562 * 18 17 15 39 39 H 1.08995 * 109.88230 * 120.47787 * 23 14 13 40 40 H 1.09000 * 109.88528 * 241.48865 * 23 14 13 41 41 H 0.96700 * 114.00468 * 66.48140 * 26 24 23 42 42 H 1.08005 * 120.45959 * 180.27856 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 3.4366 1.3019 0.0005 5 7 4.0001 2.4952 0.0010 6 6 3.2611 3.5955 0.0005 7 6 3.9343 4.9168 0.0017 8 8 5.1477 4.9803 0.0026 9 7 3.2003 6.0471 0.0069 10 6 3.8654 7.3524 0.0141 11 6 2.8117 8.4617 0.0183 12 1 2.1476 8.3701 -0.8412 13 6 2.0088 8.4599 1.3430 14 7 1.5156 9.8416 1.4873 15 6 0.4165 10.2256 2.2082 16 1 -0.2267 9.4793 2.6509 17 6 0.1288 11.5739 2.3699 18 7 0.8311 12.4790 1.7220 19 14 -1.2550 12.1038 3.5073 20 1 -0.6995 12.4249 4.8466 21 1 -1.9232 13.3060 2.9474 22 1 -2.2425 11.0017 3.6324 23 6 2.3988 10.7391 0.7284 24 6 3.4785 9.8620 0.0601 25 1 4.3854 9.8394 0.6644 26 8 3.7611 10.3271 -1.2612 27 7 1.9366 3.5466 0.0046 28 6 1.3024 2.3895 -0.0009 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 4.0447 0.4094 0.0002 33 1 2.2316 5.9963 0.0057 34 1 4.4874 7.4382 0.9050 35 1 4.4889 7.4474 -0.8749 36 1 1.1727 7.7635 1.2789 37 1 2.6574 8.1992 2.1794 38 1 0.6303 13.4212 1.8352 39 1 1.8253 11.2662 -0.0339 40 1 2.8661 11.4567 1.4028 41 1 4.1787 11.1988 -1.2905 42 1 0.2229 2.3568 -0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958244070.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:05 Heat of formation + Delta-G solvation = -33.598387 kcal Electronic energy + Delta-G solvation = -26539.844461 eV Core-core repulsion = 22522.045499 eV Total energy + Delta-G solvation = -4017.798961 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.80218 -39.75232 -38.83737 -38.07702 -35.22048 -34.78322 -34.14475 -32.30851 -31.64907 -29.74768 -28.38018 -27.55165 -25.88264 -25.14347 -24.56686 -23.23192 -21.18882 -20.25999 -19.99497 -18.83254 -18.55166 -18.28591 -16.93692 -16.70301 -16.66877 -15.80796 -15.68121 -15.53806 -15.10469 -14.90768 -14.53331 -14.16772 -14.05314 -13.91137 -13.51504 -13.09149 -12.91773 -12.64402 -12.43017 -12.18683 -11.96550 -11.90640 -11.49159 -11.41001 -11.21916 -10.98516 -10.82948 -10.58795 -10.23501 -10.04029 -9.83858 -9.78263 -9.69513 -9.27315 -9.21725 -8.94064 -8.63883 -6.89582 -5.77415 -3.10665 0.13931 0.55527 2.39591 2.49463 2.78075 3.37561 3.42661 3.44786 3.55579 3.57326 3.70255 4.07643 4.20560 4.43730 4.53616 4.54388 4.70218 4.76942 4.91378 5.03777 5.15989 5.23126 5.42974 5.49036 5.54074 5.69085 5.86650 6.00846 6.04997 6.21382 6.22459 6.35722 6.43163 6.55360 6.55884 6.83615 7.30909 7.40320 7.49058 7.66005 7.74565 8.14840 8.18885 8.20513 9.15225 9.76023 10.41008 11.34695 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014348 B = 0.002759 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.048866 B =10147.313533 C =11752.477349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.298 6.298 3 C 0.042 3.958 4 C 0.123 3.877 5 N -0.428 5.428 6 C 0.245 3.755 7 C 0.585 3.415 8 O -0.511 6.511 9 N -0.701 5.701 10 C 0.133 3.867 11 C -0.108 4.108 12 H 0.091 0.909 13 C 0.141 3.859 14 N -0.602 5.602 15 C -0.230 4.230 16 H 0.080 0.920 17 C -0.007 4.007 18 N -0.921 5.921 19 Si 0.912 3.088 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.151 3.849 24 C 0.083 3.917 25 H 0.058 0.942 26 O -0.566 6.566 27 N -0.453 5.453 28 C 0.066 3.934 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.184 0.816 33 H 0.412 0.588 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.043 0.957 37 H 0.024 0.976 38 H 0.253 0.747 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.376 0.624 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.815 -22.350 -5.027 22.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.208 6.208 3 C -0.009 4.009 4 C -0.047 4.047 5 N -0.142 5.142 6 C -0.024 4.024 7 C 0.366 3.634 8 O -0.383 6.383 9 N -0.353 5.353 10 C 0.010 3.990 11 C -0.128 4.128 12 H 0.109 0.891 13 C 0.015 3.985 14 N -0.329 5.329 15 C -0.358 4.358 16 H 0.098 0.902 17 C -0.203 4.203 18 N -0.568 5.568 19 Si 0.743 3.257 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.206 1.206 23 C 0.026 3.974 24 C 0.023 3.977 25 H 0.076 0.924 26 O -0.371 6.371 27 N -0.170 5.170 28 C -0.102 4.102 29 H 0.128 0.872 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.201 0.799 33 H 0.249 0.751 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.042 0.958 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.223 0.777 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.871 -21.936 -5.118 22.603 hybrid contribution -1.807 0.077 0.795 1.976 sum 0.064 -21.860 -4.323 22.283 Atomic orbital electron populations 1.23286 0.77136 1.05150 1.02142 1.86093 1.22364 1.24856 1.87497 1.21243 0.95258 0.86925 0.97495 1.22907 0.89275 0.96321 0.96173 1.68281 1.39769 0.97550 1.08641 1.22800 0.86053 0.94353 0.99212 1.17060 0.86257 0.81859 0.78211 1.90814 1.12674 1.86253 1.48589 1.45824 1.11283 1.05090 1.73119 1.21475 0.95089 0.79777 1.02642 1.22610 0.96863 0.92513 1.00781 0.89098 1.21614 0.95375 0.88996 0.92553 1.44304 1.30021 1.00490 1.58133 1.19075 1.00759 0.91355 1.24658 0.90248 1.24833 0.99624 0.95710 1.00159 1.69951 1.42418 1.00253 1.44155 0.86095 0.81125 0.78018 0.80507 1.21582 1.21748 1.20593 1.21838 0.89632 0.91095 0.94875 1.23117 0.97532 0.93725 0.83293 0.92405 1.86422 1.83844 1.38910 1.27947 1.68157 1.10213 1.29119 1.09512 1.23484 1.01458 0.86557 0.98730 0.87239 0.91799 0.91855 0.79872 0.75126 0.90947 0.90745 0.93829 0.95798 0.93680 0.92795 0.93281 0.77703 0.80450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 9.84 101.05 0.99 1.05 16 2 O -0.30 -1.92 10.51 -18.90 -0.20 -2.12 16 3 C 0.04 0.34 6.75 -38.68 -0.26 0.08 16 4 C 0.12 1.16 11.28 -17.05 -0.19 0.96 16 5 N -0.43 -5.66 10.11 -11.03 -0.11 -5.78 16 6 C 0.24 3.40 7.59 -157.05 -1.19 2.21 16 7 C 0.59 9.26 7.84 -12.12 -0.10 9.16 16 8 O -0.51 -9.58 16.86 5.37 0.09 -9.49 16 9 N -0.70 -10.19 5.39 -61.11 -0.33 -10.52 16 10 C 0.13 2.06 5.12 -4.04 -0.02 2.04 16 11 C -0.11 -1.88 2.83 -88.48 -0.25 -2.13 16 12 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 13 C 0.14 2.81 6.41 -2.54 -0.02 2.80 16 14 N -0.60 -15.09 3.39 -170.08 -0.58 -15.67 16 15 C -0.23 -6.33 10.26 -15.06 -0.15 -6.48 16 16 H 0.08 2.10 7.84 -52.48 -0.41 1.69 16 17 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 18 N -0.92 -26.66 10.36 55.49 0.57 -26.09 16 19 Si 0.91 21.82 29.56 -169.99 -5.02 16.80 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C 0.15 3.58 5.16 -3.06 -0.02 3.56 16 24 C 0.08 1.55 3.80 -24.90 -0.09 1.46 16 25 H 0.06 1.00 8.04 -51.93 -0.42 0.58 16 26 O -0.57 -9.80 13.39 -35.23 -0.47 -10.27 16 27 N -0.45 -5.35 9.55 -11.03 -0.11 -5.45 16 28 C 0.07 0.57 10.31 -17.05 -0.18 0.39 16 29 H 0.11 0.13 8.14 -51.93 -0.42 -0.30 16 30 H 0.06 0.14 7.71 -51.93 -0.40 -0.26 16 31 H 0.06 0.13 7.71 -51.93 -0.40 -0.27 16 32 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.41 5.55 7.63 -40.82 -0.31 5.24 16 34 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.02 0.48 8.00 -51.92 -0.42 0.07 16 38 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 39 H 0.05 1.44 7.46 -51.93 -0.39 1.05 16 40 H 0.05 1.27 7.36 -51.93 -0.38 0.89 16 41 H 0.38 5.04 9.12 45.56 0.42 5.46 16 42 H 0.18 0.91 6.47 -52.48 -0.34 0.57 16 LS Contribution 357.48 15.07 5.39 5.39 Total: -1.00 -35.29 357.48 -7.05 -42.34 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -4.72 Total: 6.05 kcal Atomic # 6 Polarization: 16.38 SS G_CDS: -1.57 Total: 14.81 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: -0.55 Total: -63.50 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.58 Total: -21.88 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.29 -7.05 -42.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958244070.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.742 kcal (2) G-P(sol) polarization free energy of solvation -35.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds