Wall clock time and date at job start Fri Apr 10 2020 18:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35732 * 117.00009 * 2 1 4 4 C 1.39446 * 120.80641 * 179.97438 * 3 2 1 5 5 N 1.31959 * 119.08369 * 180.02562 * 4 3 2 6 6 C 1.32542 * 120.83553 * 359.97438 * 5 4 3 7 7 C 1.48294 * 119.11318 * 179.97438 * 6 5 4 8 8 O 1.21498 * 119.99862 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00151 * 180.27958 * 7 6 5 10 10 C 1.46495 * 120.00294 * 179.72595 * 9 7 6 11 11 C 1.52999 * 109.47593 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.88381 * 302.57485 * 11 10 9 13 13 C 1.54903 * 111.00517 * 66.44863 * 11 10 9 14 14 N 1.47418 * 104.83341 * 155.08871 * 13 11 10 15 15 C 1.36938 * 125.65134 * 155.84420 * 14 13 11 16 16 H 1.08007 * 119.99996 * 353.88090 * 15 14 13 17 17 C 1.38817 * 120.00240 * 173.89414 * 15 14 13 18 18 N 1.31613 * 120.00071 * 6.81497 * 17 15 14 19 19 Si 1.86796 * 119.99979 * 186.82392 * 17 15 14 20 20 H 1.48498 * 109.47209 * 94.97743 * 19 17 15 21 21 H 1.48500 * 109.47149 * 214.97932 * 19 17 15 22 22 H 1.48502 * 109.47252 * 334.98109 * 19 17 15 23 23 C 1.47021 * 108.70346 * 335.87254 * 14 13 11 24 24 C 1.54326 * 107.26936 * 1.05848 * 23 14 13 25 25 H 1.08998 * 110.71976 * 263.82911 * 24 23 14 26 26 O 1.42901 * 110.71691 * 140.55577 * 24 23 14 27 27 N 1.32539 * 121.77398 * 0.25943 * 6 5 4 28 28 C 1.31953 * 120.83825 * 359.48210 * 27 6 5 29 29 H 1.09002 * 109.47003 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47139 * 299.99730 * 1 2 3 31 31 H 1.09002 * 109.46669 * 59.99673 * 1 2 3 32 32 H 1.08001 * 120.46029 * 0.04735 * 4 3 2 33 33 H 0.97007 * 119.99649 * 359.71946 * 9 7 6 34 34 H 1.08997 * 109.46725 * 299.99901 * 10 9 7 35 35 H 1.09000 * 109.47259 * 59.99587 * 10 9 7 36 36 H 1.09003 * 110.37219 * 273.92617 * 13 11 10 37 37 H 1.09007 * 110.36829 * 36.24644 * 13 11 10 38 38 H 0.96995 * 120.00269 * 180.02562 * 18 17 15 39 39 H 1.08995 * 109.88230 * 120.47787 * 23 14 13 40 40 H 1.09000 * 109.88528 * 241.48865 * 23 14 13 41 41 H 0.96700 * 114.00468 * 66.48140 * 26 24 23 42 42 H 1.08005 * 120.45959 * 180.27856 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 3.4366 1.3019 0.0005 5 7 4.0001 2.4952 0.0010 6 6 3.2611 3.5955 0.0005 7 6 3.9343 4.9168 0.0017 8 8 5.1477 4.9803 0.0026 9 7 3.2003 6.0471 0.0069 10 6 3.8654 7.3524 0.0141 11 6 2.8117 8.4617 0.0183 12 1 2.1476 8.3701 -0.8412 13 6 2.0088 8.4599 1.3430 14 7 1.5156 9.8416 1.4873 15 6 0.4165 10.2256 2.2082 16 1 -0.2267 9.4793 2.6509 17 6 0.1288 11.5739 2.3699 18 7 0.8311 12.4790 1.7220 19 14 -1.2550 12.1038 3.5073 20 1 -0.6995 12.4249 4.8466 21 1 -1.9232 13.3060 2.9474 22 1 -2.2425 11.0017 3.6324 23 6 2.3988 10.7391 0.7284 24 6 3.4785 9.8620 0.0601 25 1 4.3854 9.8394 0.6644 26 8 3.7611 10.3271 -1.2612 27 7 1.9366 3.5466 0.0046 28 6 1.3024 2.3895 -0.0009 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 4.0447 0.4094 0.0002 33 1 2.2316 5.9963 0.0057 34 1 4.4874 7.4382 0.9050 35 1 4.4889 7.4474 -0.8749 36 1 1.1727 7.7635 1.2789 37 1 2.6574 8.1992 2.1794 38 1 0.6303 13.4212 1.8352 39 1 1.8253 11.2662 -0.0339 40 1 2.8661 11.4567 1.4028 41 1 4.1787 11.1988 -1.2905 42 1 0.2229 2.3568 -0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958244070.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:01 Heat of formation + Delta-G solvation = -63.239096 kcal Electronic energy + Delta-G solvation = -26541.129778 eV Core-core repulsion = 22522.045499 eV Total energy + Delta-G solvation = -4019.084279 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -42.57291 -40.81879 -39.86890 -39.33351 -36.64978 -36.23949 -35.07334 -34.01028 -32.56426 -31.31790 -29.38895 -28.73115 -27.36320 -26.18973 -25.57920 -24.54624 -22.49530 -21.85149 -21.44417 -19.67314 -19.27529 -19.18835 -18.79132 -18.15912 -17.30651 -17.10962 -16.91759 -16.56312 -16.35259 -15.89727 -15.64459 -15.61163 -15.26157 -14.83406 -14.61630 -14.55018 -14.38432 -13.99902 -13.65567 -13.46731 -13.23046 -13.09261 -12.74228 -12.57532 -12.46539 -12.45862 -12.27495 -12.22633 -11.91838 -11.78194 -11.55611 -11.26375 -10.81859 -10.70272 -10.48020 -10.25719 -9.84042 -8.92267 -7.87008 -5.22383 -0.68482 -0.14532 1.46886 1.47623 1.48846 1.57529 1.62948 1.99375 2.48499 2.65217 2.76359 3.03444 3.19960 3.28048 3.36302 3.56163 3.62383 3.71540 3.88965 3.90171 4.15413 4.31647 4.38869 4.40956 4.45379 4.56313 4.60946 4.72603 4.77632 4.86025 4.88821 4.95734 5.20742 5.33561 5.44878 5.48665 5.55427 5.71314 5.97146 6.17076 6.25842 6.74087 6.90778 7.00899 7.07556 7.74254 8.38413 9.23778 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014348 B = 0.002759 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.048866 B =10147.313533 C =11752.477349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.299 6.299 3 C 0.066 3.934 4 C 0.112 3.888 5 N -0.456 5.456 6 C 0.216 3.784 7 C 0.585 3.415 8 O -0.550 6.550 9 N -0.693 5.693 10 C 0.146 3.854 11 C -0.090 4.090 12 H 0.087 0.913 13 C 0.140 3.860 14 N -0.625 5.625 15 C -0.243 4.243 16 H 0.087 0.913 17 C -0.066 4.066 18 N -0.950 5.950 19 Si 0.978 3.022 20 H -0.288 1.288 21 H -0.296 1.296 22 H -0.265 1.265 23 C 0.160 3.840 24 C 0.098 3.902 25 H 0.078 0.922 26 O -0.569 6.569 27 N -0.461 5.461 28 C 0.063 3.937 29 H 0.130 0.870 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.211 0.789 33 H 0.418 0.582 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.030 0.970 38 H 0.247 0.753 39 H 0.016 0.984 40 H 0.017 0.983 41 H 0.393 0.607 42 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.510 -24.978 -4.945 25.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.209 6.209 3 C 0.013 3.987 4 C -0.056 4.056 5 N -0.172 5.172 6 C -0.052 4.052 7 C 0.368 3.632 8 O -0.425 6.425 9 N -0.346 5.346 10 C 0.022 3.978 11 C -0.110 4.110 12 H 0.105 0.895 13 C 0.015 3.985 14 N -0.352 5.352 15 C -0.372 4.372 16 H 0.104 0.896 17 C -0.259 4.259 18 N -0.599 5.599 19 Si 0.807 3.193 20 H -0.215 1.215 21 H -0.223 1.223 22 H -0.190 1.190 23 C 0.034 3.966 24 C 0.038 3.962 25 H 0.096 0.904 26 O -0.376 6.376 27 N -0.179 5.179 28 C -0.105 4.105 29 H 0.148 0.852 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.227 0.773 33 H 0.256 0.744 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.048 0.952 38 H 0.056 0.944 39 H 0.034 0.966 40 H 0.036 0.964 41 H 0.243 0.757 42 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 0.525 -24.604 -5.044 25.122 hybrid contribution -1.513 0.704 0.746 1.828 sum -0.988 -23.900 -4.298 24.304 Atomic orbital electron populations 1.23672 0.74918 1.07023 1.03343 1.86119 1.24549 1.23705 1.86496 1.21199 0.94919 0.87545 0.95012 1.23344 0.90508 0.95928 0.95863 1.68193 1.40893 0.98517 1.09576 1.22272 0.86880 0.93557 1.02508 1.17369 0.85902 0.82796 0.77143 1.90776 1.14243 1.86995 1.50518 1.45707 1.11485 1.04613 1.72760 1.21258 0.94208 0.79509 1.02817 1.22405 0.96785 0.92611 0.99159 0.89457 1.21763 0.96084 0.86741 0.93951 1.44608 1.29778 1.02775 1.58010 1.19493 1.01517 0.91747 1.24428 0.89554 1.25682 1.02413 0.95931 1.01841 1.70166 1.44116 1.00060 1.45552 0.85058 0.78557 0.77546 0.78178 1.21528 1.22277 1.18964 1.21613 0.90184 0.91417 0.93349 1.22879 0.96564 0.93069 0.83729 0.90432 1.86391 1.83982 1.40334 1.26906 1.68111 1.09278 1.30698 1.09779 1.24065 1.02949 0.85756 0.97761 0.85214 0.90649 0.90533 0.77282 0.74418 0.90892 0.90505 0.92663 0.95179 0.94353 0.96576 0.96436 0.75690 0.76990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 9.84 113.37 1.12 1.12 16 2 O -0.30 -2.84 10.51 -90.55 -0.95 -3.79 16 3 C 0.07 0.90 6.75 22.85 0.15 1.06 16 4 C 0.11 1.94 11.28 84.97 0.96 2.90 16 5 N -0.46 -11.89 10.11 -188.81 -1.91 -13.80 16 6 C 0.22 5.90 7.59 137.56 1.04 6.94 16 7 C 0.58 18.51 7.84 86.92 0.68 19.19 16 8 O -0.55 -20.91 16.86 -3.71 -0.06 -20.97 16 9 N -0.69 -19.67 5.39 -465.56 -2.51 -22.18 16 10 C 0.15 4.34 5.12 86.38 0.44 4.78 16 11 C -0.09 -3.05 2.83 -9.41 -0.03 -3.08 16 12 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 13 C 0.14 5.47 6.41 86.85 0.56 6.03 16 14 N -0.62 -31.58 3.39 -692.00 -2.35 -33.93 16 15 C -0.24 -13.42 10.26 84.03 0.86 -12.56 16 16 H 0.09 4.51 7.84 -2.91 -0.02 4.49 16 17 C -0.07 -3.70 5.48 84.86 0.47 -3.23 16 18 N -0.95 -56.69 10.36 21.65 0.22 -56.46 16 19 Si 0.98 45.21 29.56 68.60 2.03 47.24 16 20 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 21 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 22 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 23 C 0.16 7.79 5.16 86.73 0.45 8.24 16 24 C 0.10 3.60 3.80 31.78 0.12 3.72 16 25 H 0.08 2.59 8.04 -2.39 -0.02 2.57 16 26 O -0.57 -19.18 13.39 -148.98 -1.99 -21.17 16 27 N -0.46 -10.22 9.55 -188.81 -1.80 -12.03 16 28 C 0.06 0.91 10.31 84.97 0.88 1.78 16 29 H 0.13 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.07 0.03 7.71 -2.39 -0.02 0.01 16 31 H 0.08 0.00 7.71 -2.39 -0.02 -0.02 16 32 H 0.21 2.20 8.06 -2.91 -0.02 2.17 16 33 H 0.42 10.82 7.63 -92.70 -0.71 10.12 16 34 H 0.07 2.21 8.10 -2.39 -0.02 2.19 16 35 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.03 1.17 8.00 -2.38 -0.02 1.15 16 38 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 39 H 0.02 0.89 7.46 -2.39 -0.02 0.87 16 40 H 0.02 0.95 7.36 -2.39 -0.02 0.93 16 41 H 0.39 10.22 9.12 -74.06 -0.68 9.55 16 42 H 0.21 1.36 6.47 -2.91 -0.02 1.34 16 Total: -1.00 -78.54 357.48 -1.94 -80.48 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -0.31 Total: 19.73 kcal Atomic # 6 Polarization: 29.19 SS G_CDS: 7.70 Total: 36.89 kcal Atomic # 7 Polarization: -130.05 SS G_CDS: -8.35 Total: -138.40 kcal Atomic # 8 Polarization: -42.93 SS G_CDS: -3.01 Total: -45.94 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -78.54 -1.94 -80.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958244070.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.240 kcal (2) G-P(sol) polarization free energy of solvation -78.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds