Wall clock time and date at job start Fri Apr 10 2020 18:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35475 * 116.99778 * 2 1 4 4 N 1.32424 * 119.11572 * 0.02562 * 3 2 1 5 5 C 1.32132 * 120.97475 * 179.97438 * 4 3 2 6 6 C 1.38806 * 119.22102 * 0.02562 * 5 4 3 7 7 C 1.39464 * 118.38567 * 0.02562 * 6 5 4 8 8 C 1.48459 * 120.51347 * 180.02562 * 7 6 5 9 9 O 1.21473 * 119.99974 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00061 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00025 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47202 * 179.97438 * 11 10 8 13 13 H 1.09007 * 110.88257 * 51.11650 * 12 11 10 14 14 C 1.54915 * 111.00275 * 287.19949 * 12 11 10 15 15 N 1.47429 * 104.82632 * 204.91512 * 14 12 11 16 16 C 1.36942 * 125.64041 * 204.17229 * 15 14 12 17 17 H 1.07999 * 120.00392 * 359.97313 * 16 15 14 18 18 C 1.38812 * 119.99364 * 179.97438 * 16 15 14 19 19 N 1.31615 * 120.00298 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99907 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47027 * 60.00278 * 20 18 16 22 22 H 1.48503 * 109.47053 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47166 * 300.00062 * 20 18 16 24 24 C 1.47016 * 108.70503 * 24.12398 * 15 14 12 25 25 C 1.54318 * 107.27364 * 358.94582 * 24 15 14 26 26 H 1.09000 * 110.87088 * 219.37075 * 25 24 15 27 27 O 1.42900 * 110.72609 * 96.16389 * 25 24 15 28 28 N 1.32081 * 119.11230 * 179.72692 * 3 2 1 29 29 H 1.08999 * 109.47144 * 59.99681 * 1 2 3 30 30 H 1.08996 * 109.46732 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47043 * 300.00082 * 1 2 3 32 32 H 1.07996 * 120.38801 * 179.97438 * 5 4 3 33 33 H 1.08000 * 120.80284 * 180.02562 * 6 5 4 34 34 H 0.97002 * 119.99677 * 359.97438 * 10 8 7 35 35 H 1.09003 * 109.47081 * 299.99775 * 11 10 8 36 36 H 1.08998 * 109.46760 * 59.99988 * 11 10 8 37 37 H 1.08996 * 110.36862 * 323.74854 * 14 12 11 38 38 H 1.09001 * 110.36890 * 86.07833 * 14 12 11 39 39 H 0.97005 * 120.00713 * 179.97438 * 19 18 16 40 40 H 1.08999 * 109.88424 * 239.52049 * 24 15 14 41 41 H 1.09013 * 110.00713 * 118.43057 * 24 15 14 42 42 H 0.96705 * 113.99672 * 66.47887 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2071 0.0000 4 7 1.3057 2.3064 0.0005 5 6 1.8670 3.5026 0.0010 6 6 3.2515 3.6014 0.0005 7 6 4.0002 2.4248 -0.0011 8 6 5.4839 2.4754 -0.0012 9 8 6.0551 3.5475 -0.0003 10 7 6.1973 1.3318 -0.0022 11 6 7.6614 1.3818 -0.0029 12 6 8.2204 -0.0424 -0.0034 13 1 7.7668 -0.6376 -0.7961 14 6 8.0257 -0.7158 1.3781 15 7 9.0804 -1.7435 1.4489 16 6 9.0439 -2.8725 2.2230 17 1 8.1884 -3.0682 2.8525 18 6 10.1064 -3.7653 2.1986 19 7 11.1492 -3.5266 1.4319 20 14 10.0570 -5.3051 3.2551 21 1 8.8849 -6.1318 2.8706 22 1 11.3031 -6.0863 3.0499 23 1 9.9441 -4.9208 4.6852 24 6 10.1773 -1.3560 0.5499 25 6 9.7667 -0.0330 -0.1303 26 1 10.0676 -0.0253 -1.1779 27 8 10.3239 1.0859 0.5622 28 7 3.3639 1.2559 0.0055 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.2557 4.3929 0.0010 33 1 3.7371 4.5661 0.0013 34 1 5.7412 0.4757 -0.0026 35 1 8.0066 1.9083 -0.8927 36 1 8.0074 1.9072 0.8873 37 1 8.1532 0.0143 2.1773 38 1 7.0406 -1.1784 1.4393 39 1 11.8920 -4.1503 1.4151 40 1 10.3295 -2.1287 -0.2037 41 1 11.0940 -1.2100 1.1214 42 1 11.2883 1.1379 0.5136 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958255374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:05 Heat of formation + Delta-G solvation = -28.338250 kcal Electronic energy + Delta-G solvation = -26767.678488 eV Core-core repulsion = 22750.107623 eV Total energy + Delta-G solvation = -4017.570865 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.69118 -39.74810 -38.56803 -38.13309 -35.05328 -34.65090 -34.24452 -32.10994 -31.82750 -29.74838 -27.99013 -27.72085 -26.18879 -25.12869 -24.21124 -23.22498 -21.17536 -20.25201 -19.92715 -18.90290 -18.46371 -17.31466 -17.19279 -16.79602 -16.37422 -15.81387 -15.65685 -15.36579 -14.92445 -14.80606 -14.47723 -14.27944 -13.96114 -13.81646 -13.69364 -13.27930 -12.74481 -12.55967 -12.39431 -11.90318 -11.73452 -11.58100 -11.42639 -11.21769 -11.19506 -10.79405 -10.70396 -10.56861 -10.42207 -10.05890 -10.00640 -9.77202 -9.59357 -9.44368 -9.17952 -8.98104 -8.64183 -6.84870 -5.72920 -3.05737 0.17362 0.62343 2.12830 2.58382 2.93963 3.41035 3.45081 3.46237 3.50691 3.57022 4.12847 4.28712 4.48227 4.58502 4.71309 4.85856 4.86855 4.91057 5.10365 5.21462 5.26347 5.33328 5.42628 5.55296 5.59277 5.62344 5.90765 6.02030 6.09581 6.19086 6.35175 6.37996 6.45220 6.62921 6.72410 6.90691 7.38667 7.39962 7.49576 7.62787 7.75502 8.04119 8.21875 8.24177 9.20154 9.80699 10.46260 11.39158 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013788 B = 0.002987 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.267329 B = 9372.112279 C =11116.944354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.286 6.286 3 C 0.500 3.500 4 N -0.557 5.557 5 C 0.189 3.811 6 C -0.212 4.212 7 C 0.177 3.823 8 C 0.567 3.433 9 O -0.524 6.524 10 N -0.698 5.698 11 C 0.138 3.862 12 C -0.110 4.110 13 H 0.091 0.909 14 C 0.144 3.856 15 N -0.602 5.602 16 C -0.226 4.226 17 H 0.078 0.922 18 C -0.009 4.009 19 N -0.926 5.926 20 Si 0.913 3.087 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.154 3.846 25 C 0.083 3.917 26 H 0.058 0.942 27 O -0.564 6.564 28 N -0.501 5.501 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.063 0.937 32 H 0.182 0.818 33 H 0.165 0.835 34 H 0.414 0.586 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.026 0.974 38 H 0.039 0.961 39 H 0.253 0.747 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.926 13.223 -6.292 23.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.186 6.186 3 C 0.197 3.803 4 N -0.287 5.287 5 C 0.022 3.978 6 C -0.236 4.236 7 C 0.029 3.971 8 C 0.349 3.651 9 O -0.399 6.399 10 N -0.348 5.348 11 C 0.015 3.985 12 C -0.130 4.130 13 H 0.109 0.891 14 C 0.018 3.982 15 N -0.329 5.329 16 C -0.355 4.355 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.574 5.574 20 Si 0.744 3.256 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.029 3.971 25 C 0.023 3.977 26 H 0.075 0.925 27 O -0.370 6.370 28 N -0.229 5.229 29 H 0.082 0.918 30 H 0.124 0.876 31 H 0.082 0.918 32 H 0.199 0.801 33 H 0.183 0.817 34 H 0.250 0.750 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.043 0.957 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -18.343 12.641 -6.102 23.098 hybrid contribution 0.527 -0.613 0.421 0.912 sum -17.816 12.028 -5.681 22.234 Atomic orbital electron populations 1.23035 0.75420 1.03853 1.02813 1.86153 1.23507 1.22173 1.86801 1.20562 0.85644 0.84995 0.89065 1.68016 1.41613 0.99423 1.19619 1.23089 0.92230 0.94467 0.88011 1.22814 0.95539 1.01143 1.04068 1.21581 0.95191 0.87990 0.92378 1.17668 0.84433 0.84849 0.78124 1.90810 1.70064 1.29034 1.50040 1.46051 1.08284 1.08902 1.71587 1.21327 0.76571 0.97404 1.03198 1.22695 0.94900 0.94616 1.00773 0.89100 1.21600 0.92775 0.91188 0.92668 1.44357 1.16462 1.22014 1.50052 1.19046 1.02635 0.96144 1.17634 0.90395 1.24785 0.96578 0.99131 1.00018 1.69915 1.08066 1.37304 1.42100 0.86171 0.76796 0.82701 0.79942 1.21131 1.21619 1.21178 1.21844 0.91699 0.90452 0.93154 1.23133 0.92121 0.88086 0.94341 0.92462 1.86399 1.25299 1.47716 1.77584 1.67454 1.08366 1.29300 1.17796 0.91831 0.87617 0.91787 0.80149 0.81713 0.75003 0.91214 0.89849 0.95670 0.94290 0.93717 0.92963 0.93211 0.77757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.36 101.05 1.05 1.36 16 2 O -0.29 -3.30 10.56 -18.12 -0.19 -3.49 16 3 C 0.50 6.12 8.48 -91.36 -0.77 5.35 16 4 N -0.56 -5.62 9.20 -14.74 -0.14 -5.75 16 5 C 0.19 1.46 11.30 -17.21 -0.19 1.27 16 6 C -0.21 -2.01 9.71 -38.91 -0.38 -2.38 16 7 C 0.18 2.22 6.79 -82.65 -0.56 1.66 16 8 C 0.57 8.17 7.83 -12.05 -0.09 8.08 16 9 O -0.52 -8.64 16.42 5.39 0.09 -8.56 16 10 N -0.70 -10.00 5.49 -61.05 -0.34 -10.33 16 11 C 0.14 2.14 4.60 -4.04 -0.02 2.12 16 12 C -0.11 -1.90 2.98 -88.47 -0.26 -2.16 16 13 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 14 C 0.14 3.01 6.64 -2.52 -0.02 2.99 16 15 N -0.60 -15.38 3.39 -170.07 -0.58 -15.96 16 16 C -0.23 -6.35 10.28 -15.06 -0.15 -6.50 16 17 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 18 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 19 N -0.93 -26.94 10.31 55.49 0.57 -26.37 16 20 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 C 0.15 3.62 5.14 -3.07 -0.02 3.61 16 25 C 0.08 1.51 4.09 -24.90 -0.10 1.41 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 27 O -0.56 -9.73 12.24 -35.23 -0.43 -10.16 16 28 N -0.50 -6.68 9.73 -11.29 -0.11 -6.79 16 29 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 30 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 32 H 0.18 0.62 8.06 -52.49 -0.42 0.19 16 33 H 0.17 1.31 7.73 -52.49 -0.41 0.90 16 34 H 0.41 5.72 7.86 -40.82 -0.32 5.40 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.08 1.45 7.55 -51.93 -0.39 1.06 16 37 H 0.03 0.56 7.91 -51.93 -0.41 0.15 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.05 1.35 7.38 -51.93 -0.38 0.97 16 41 H 0.05 1.30 7.43 -51.92 -0.39 0.91 16 42 H 0.38 5.10 9.12 45.56 0.42 5.51 16 LS Contribution 357.96 15.07 5.39 5.39 Total: -1.00 -34.55 357.96 -7.18 -41.72 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -4.81 Total: 6.69 kcal Atomic # 6 Polarization: 18.06 SS G_CDS: -1.62 Total: 16.44 kcal Atomic # 7 Polarization: -64.62 SS G_CDS: -0.59 Total: -65.21 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.53 Total: -22.21 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.55 -7.18 -41.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958255374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.385 kcal (2) G-P(sol) polarization free energy of solvation -34.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds