Wall clock time and date at job start Fri Apr 10 2020 18:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35475 * 116.99778 * 2 1 4 4 N 1.32424 * 119.11572 * 0.02562 * 3 2 1 5 5 C 1.32132 * 120.97475 * 179.97438 * 4 3 2 6 6 C 1.38806 * 119.22102 * 0.02562 * 5 4 3 7 7 C 1.39464 * 118.38567 * 0.02562 * 6 5 4 8 8 C 1.48459 * 120.51347 * 180.02562 * 7 6 5 9 9 O 1.21473 * 119.99974 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00061 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00025 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47202 * 179.97438 * 11 10 8 13 13 H 1.09007 * 110.88257 * 51.11650 * 12 11 10 14 14 C 1.54915 * 111.00275 * 287.19949 * 12 11 10 15 15 N 1.47429 * 104.82632 * 204.91512 * 14 12 11 16 16 C 1.36942 * 125.64041 * 204.17229 * 15 14 12 17 17 H 1.07999 * 120.00392 * 359.97313 * 16 15 14 18 18 C 1.38812 * 119.99364 * 179.97438 * 16 15 14 19 19 N 1.31615 * 120.00298 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99907 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47027 * 60.00278 * 20 18 16 22 22 H 1.48503 * 109.47053 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47166 * 300.00062 * 20 18 16 24 24 C 1.47016 * 108.70503 * 24.12398 * 15 14 12 25 25 C 1.54318 * 107.27364 * 358.94582 * 24 15 14 26 26 H 1.09000 * 110.87088 * 219.37075 * 25 24 15 27 27 O 1.42900 * 110.72609 * 96.16389 * 25 24 15 28 28 N 1.32081 * 119.11230 * 179.72692 * 3 2 1 29 29 H 1.08999 * 109.47144 * 59.99681 * 1 2 3 30 30 H 1.08996 * 109.46732 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47043 * 300.00082 * 1 2 3 32 32 H 1.07996 * 120.38801 * 179.97438 * 5 4 3 33 33 H 1.08000 * 120.80284 * 180.02562 * 6 5 4 34 34 H 0.97002 * 119.99677 * 359.97438 * 10 8 7 35 35 H 1.09003 * 109.47081 * 299.99775 * 11 10 8 36 36 H 1.08998 * 109.46760 * 59.99988 * 11 10 8 37 37 H 1.08996 * 110.36862 * 323.74854 * 14 12 11 38 38 H 1.09001 * 110.36890 * 86.07833 * 14 12 11 39 39 H 0.97005 * 120.00713 * 179.97438 * 19 18 16 40 40 H 1.08999 * 109.88424 * 239.52049 * 24 15 14 41 41 H 1.09013 * 110.00713 * 118.43057 * 24 15 14 42 42 H 0.96705 * 113.99672 * 66.47887 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2071 0.0000 4 7 1.3057 2.3064 0.0005 5 6 1.8670 3.5026 0.0010 6 6 3.2515 3.6014 0.0005 7 6 4.0002 2.4248 -0.0011 8 6 5.4839 2.4754 -0.0012 9 8 6.0551 3.5475 -0.0003 10 7 6.1973 1.3318 -0.0022 11 6 7.6614 1.3818 -0.0029 12 6 8.2204 -0.0424 -0.0034 13 1 7.7668 -0.6376 -0.7961 14 6 8.0257 -0.7158 1.3781 15 7 9.0804 -1.7435 1.4489 16 6 9.0439 -2.8725 2.2230 17 1 8.1884 -3.0682 2.8525 18 6 10.1064 -3.7653 2.1986 19 7 11.1492 -3.5266 1.4319 20 14 10.0570 -5.3051 3.2551 21 1 8.8849 -6.1318 2.8706 22 1 11.3031 -6.0863 3.0499 23 1 9.9441 -4.9208 4.6852 24 6 10.1773 -1.3560 0.5499 25 6 9.7667 -0.0330 -0.1303 26 1 10.0676 -0.0253 -1.1779 27 8 10.3239 1.0859 0.5622 28 7 3.3639 1.2559 0.0055 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.2557 4.3929 0.0010 33 1 3.7371 4.5661 0.0013 34 1 5.7412 0.4757 -0.0026 35 1 8.0066 1.9083 -0.8927 36 1 8.0074 1.9072 0.8873 37 1 8.1532 0.0143 2.1773 38 1 7.0406 -1.1784 1.4393 39 1 11.8920 -4.1503 1.4151 40 1 10.3295 -2.1287 -0.2037 41 1 11.0940 -1.2100 1.1214 42 1 11.2883 1.1379 0.5136 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958255374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:04 Heat of formation + Delta-G solvation = -59.105039 kcal Electronic energy + Delta-G solvation = -26769.012636 eV Core-core repulsion = 22750.107623 eV Total energy + Delta-G solvation = -4018.905013 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.50415 -40.87298 -39.86968 -39.16795 -36.41307 -36.21758 -35.14142 -33.90933 -32.63065 -31.42294 -29.51760 -28.53304 -27.54645 -26.53149 -25.26789 -24.48905 -22.43122 -21.86743 -21.32735 -19.91598 -19.34047 -19.06456 -18.30598 -17.79148 -17.56783 -16.90330 -16.82098 -16.52952 -16.48338 -15.81365 -15.63688 -15.46732 -15.25120 -15.10572 -14.82286 -14.57386 -14.37381 -14.24630 -13.57209 -13.13899 -13.09194 -12.95089 -12.65450 -12.40443 -12.38429 -12.34488 -12.13268 -12.06136 -11.94205 -11.79428 -11.75174 -11.41210 -10.78692 -10.72288 -10.45626 -10.27511 -10.12133 -8.91730 -7.86678 -5.21895 -0.68191 -0.10470 1.38367 1.45275 1.48422 1.54566 1.56920 1.89540 2.48353 2.65862 2.85652 3.21923 3.28515 3.36009 3.52027 3.55738 3.83734 3.89639 3.93062 3.98839 4.18932 4.38346 4.40779 4.41730 4.53807 4.59644 4.64125 4.72081 4.82648 4.88026 4.97344 4.98029 5.19682 5.34441 5.40806 5.44958 5.52794 5.69706 6.00762 6.17093 6.29660 6.78208 6.93007 6.96843 7.08944 7.74988 8.39339 9.23212 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013788 B = 0.002987 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.267329 B = 9372.112279 C =11116.944354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.308 6.308 3 C 0.485 3.515 4 N -0.554 5.554 5 C 0.204 3.796 6 C -0.202 4.202 7 C 0.153 3.847 8 C 0.569 3.431 9 O -0.548 6.548 10 N -0.697 5.697 11 C 0.153 3.847 12 C -0.094 4.094 13 H 0.105 0.895 14 C 0.142 3.858 15 N -0.624 5.624 16 C -0.246 4.246 17 H 0.079 0.921 18 C -0.064 4.064 19 N -0.950 5.950 20 Si 0.979 3.021 21 H -0.276 1.276 22 H -0.292 1.292 23 H -0.280 1.280 24 C 0.160 3.840 25 C 0.098 3.902 26 H 0.090 0.910 27 O -0.569 6.569 28 N -0.529 5.529 29 H 0.070 0.930 30 H 0.126 0.874 31 H 0.068 0.932 32 H 0.232 0.768 33 H 0.182 0.818 34 H 0.416 0.584 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.014 0.986 38 H 0.044 0.956 39 H 0.248 0.752 40 H 0.023 0.977 41 H 0.016 0.984 42 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.040 14.539 -6.784 25.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.210 6.210 3 C 0.183 3.817 4 N -0.284 5.284 5 C 0.037 3.963 6 C -0.225 4.225 7 C 0.006 3.994 8 C 0.353 3.647 9 O -0.426 6.426 10 N -0.348 5.348 11 C 0.030 3.970 12 C -0.114 4.114 13 H 0.123 0.877 14 C 0.017 3.983 15 N -0.351 5.351 16 C -0.375 4.375 17 H 0.097 0.903 18 C -0.257 4.257 19 N -0.599 5.599 20 Si 0.807 3.193 21 H -0.202 1.202 22 H -0.218 1.218 23 H -0.206 1.206 24 C 0.034 3.966 25 C 0.038 3.962 26 H 0.108 0.892 27 O -0.377 6.377 28 N -0.258 5.258 29 H 0.088 0.912 30 H 0.145 0.855 31 H 0.086 0.914 32 H 0.248 0.752 33 H 0.199 0.801 34 H 0.253 0.747 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.032 0.968 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.041 0.959 41 H 0.034 0.966 42 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -20.475 13.969 -6.596 25.649 hybrid contribution 1.103 -0.958 0.611 1.584 sum -19.372 13.011 -5.985 24.091 Atomic orbital electron populations 1.23296 0.73408 1.05465 1.03294 1.86121 1.25589 1.22461 1.86808 1.20735 0.85543 0.85798 0.89671 1.68144 1.41257 0.99666 1.19342 1.23937 0.91971 0.95124 0.85284 1.23096 0.96262 1.00672 1.02496 1.21371 0.94122 0.89108 0.94753 1.17938 0.85428 0.84235 0.77118 1.90786 1.70899 1.29667 1.51208 1.45987 1.07759 1.09293 1.71736 1.21047 0.77340 0.95746 1.02864 1.22576 0.94588 0.95527 0.98702 0.87669 1.21684 0.91823 0.90169 0.94619 1.44677 1.18155 1.22270 1.49962 1.19423 1.02768 0.97264 1.18029 0.90279 1.25614 0.96390 1.02144 1.01513 1.70130 1.08420 1.38007 1.43325 0.85154 0.76736 0.79087 0.78364 1.20160 1.21828 1.20625 1.21690 0.90327 0.92616 0.91935 1.22936 0.92576 0.85424 0.95242 0.89186 1.86376 1.26994 1.46653 1.77697 1.67300 1.09369 1.30037 1.19101 0.91164 0.85546 0.91375 0.75180 0.80080 0.74715 0.90019 0.91646 0.96836 0.93808 0.94299 0.95870 0.96609 0.75868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.36 113.37 1.17 1.68 16 2 O -0.31 -6.93 10.56 -87.74 -0.93 -7.86 16 3 C 0.49 11.40 8.48 180.61 1.53 12.93 16 4 N -0.55 -9.89 9.20 -313.44 -2.88 -12.78 16 5 C 0.20 2.46 11.30 84.78 0.96 3.42 16 6 C -0.20 -3.33 9.71 22.70 0.22 -3.11 16 7 C 0.15 3.68 6.79 41.98 0.29 3.96 16 8 C 0.57 16.03 7.83 86.97 0.68 16.71 16 9 O -0.55 -17.62 16.42 -3.63 -0.06 -17.67 16 10 N -0.70 -19.57 5.49 -465.38 -2.56 -22.13 16 11 C 0.15 4.60 4.60 86.38 0.40 5.00 16 12 C -0.09 -3.17 2.98 -9.40 -0.03 -3.19 16 13 H 0.11 3.27 8.14 -2.38 -0.02 3.25 16 14 C 0.14 6.00 6.64 86.86 0.58 6.58 16 15 N -0.62 -32.55 3.39 -691.97 -2.35 -34.90 16 16 C -0.25 -14.06 10.28 84.03 0.86 -13.20 16 17 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 18 C -0.06 -3.65 5.49 84.86 0.47 -3.18 16 19 N -0.95 -56.80 10.31 21.65 0.22 -56.57 16 20 Si 0.98 46.19 29.55 68.60 2.03 48.22 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 22 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 24 C 0.16 7.71 5.14 86.73 0.45 8.16 16 25 C 0.10 3.48 4.09 31.78 0.13 3.61 16 26 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 27 O -0.57 -19.07 12.24 -148.98 -1.82 -20.89 16 28 N -0.53 -13.86 9.73 -302.70 -2.94 -16.80 16 29 H 0.07 0.78 8.09 -2.39 -0.02 0.76 16 30 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 0.79 8.09 -2.39 -0.02 0.77 16 32 H 0.23 0.34 8.06 -2.91 -0.02 0.32 16 33 H 0.18 2.36 7.73 -2.91 -0.02 2.34 16 34 H 0.42 11.37 7.86 -92.71 -0.73 10.64 16 35 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.07 2.24 7.55 -2.39 -0.02 2.22 16 37 H 0.01 0.61 7.91 -2.39 -0.02 0.60 16 38 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.25 14.42 8.31 -92.70 -0.77 13.65 16 40 H 0.02 1.24 7.38 -2.39 -0.02 1.22 16 41 H 0.02 0.86 7.43 -2.38 -0.02 0.84 16 42 H 0.39 10.24 9.12 -74.05 -0.68 9.57 16 Total: -1.00 -76.94 357.96 -3.92 -80.86 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -0.33 Total: 21.15 kcal Atomic # 6 Polarization: 31.66 SS G_CDS: 7.70 Total: 39.37 kcal Atomic # 7 Polarization: -132.66 SS G_CDS: -10.51 Total: -143.17 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -2.81 Total: -46.42 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -76.94 -3.92 -80.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958255374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.756 kcal (2) G-P(sol) polarization free energy of solvation -76.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds