Wall clock time and date at job start Fri Apr 10 2020 18:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35463 * 117.00636 * 2 1 4 4 N 1.32424 * 119.11064 * 359.97438 * 3 2 1 5 5 C 1.32132 * 120.97400 * 180.02562 * 4 3 2 6 6 C 1.38808 * 119.22271 * 359.97438 * 5 4 3 7 7 C 1.39461 * 118.38345 * 359.97438 * 6 5 4 8 8 C 1.48468 * 120.51278 * 179.97438 * 7 6 5 9 9 O 1.21477 * 120.00127 * 0.02706 * 8 7 6 10 10 N 1.34780 * 119.99750 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99600 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46603 * 180.02562 * 11 10 8 13 13 H 1.08990 * 110.64592 * 56.68702 * 12 11 10 14 14 C 1.54327 * 110.71819 * 293.54047 * 12 11 10 15 15 N 1.47022 * 107.27034 * 219.44556 * 14 12 11 16 16 C 1.36943 * 125.64806 * 178.90307 * 15 14 12 17 17 H 1.08001 * 119.99768 * 0.02562 * 16 15 14 18 18 C 1.38810 * 119.99960 * 180.02562 * 16 15 14 19 19 N 1.31617 * 120.00080 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99666 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47000 * 60.00342 * 20 18 16 22 22 H 1.48501 * 109.46900 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47290 * 300.00413 * 20 18 16 24 24 C 1.47424 * 108.70593 * 358.94472 * 15 14 12 25 25 C 1.54909 * 104.83042 * 24.12923 * 24 15 14 26 26 H 1.08999 * 111.00764 * 81.06544 * 25 24 15 27 27 O 1.42900 * 111.00377 * 204.91737 * 25 24 15 28 28 N 1.32079 * 119.12006 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47342 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47043 * 300.00627 * 1 2 3 31 31 H 1.09001 * 109.46821 * 59.99711 * 1 2 3 32 32 H 1.08002 * 120.38945 * 179.97438 * 5 4 3 33 33 H 1.08003 * 120.80707 * 180.02562 * 6 5 4 34 34 H 0.96999 * 120.00130 * 0.02562 * 10 8 7 35 35 H 1.08997 * 109.46732 * 299.99964 * 11 10 8 36 36 H 1.08991 * 109.47044 * 60.00223 * 11 10 8 37 37 H 1.08996 * 109.88462 * 338.86870 * 14 12 11 38 38 H 1.09000 * 109.87650 * 100.03173 * 14 12 11 39 39 H 0.97003 * 119.99608 * 179.97438 * 19 18 16 40 40 H 1.09001 * 110.36778 * 142.96310 * 24 15 14 41 41 H 1.08999 * 110.36738 * 265.17796 * 24 15 14 42 42 H 0.96697 * 113.99828 * 292.19437 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2069 0.0000 4 7 1.3059 2.3063 -0.0005 5 6 1.8673 3.5024 -0.0010 6 6 3.2518 3.6012 -0.0005 7 6 4.0004 2.4245 0.0011 8 6 5.4842 2.4750 0.0012 9 8 6.0555 3.5471 0.0003 10 7 6.1974 1.3314 0.0022 11 6 7.6616 1.3813 0.0029 12 6 8.2203 -0.0431 0.0034 13 1 7.8395 -0.6056 -0.8490 14 6 7.8824 -0.7616 1.3267 15 7 9.0610 -1.5543 1.7063 16 6 9.1760 -2.3240 2.8331 17 1 8.3548 -2.3843 3.5320 18 6 10.3480 -3.0267 3.0770 19 7 11.3489 -2.9528 2.2255 20 14 10.5046 -4.0771 4.6137 21 1 9.4528 -5.1254 4.6059 22 1 11.8435 -4.7189 4.6403 23 1 10.3421 -3.2218 5.8167 24 6 10.0989 -1.3826 0.6735 25 6 9.7718 -0.0241 0.0047 26 1 10.1519 0.8061 0.6001 27 8 10.2845 0.0272 -1.3282 28 7 3.3640 1.2556 -0.0005 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.2560 4.3928 -0.0019 33 1 3.7376 4.5658 -0.0005 34 1 5.7413 0.4753 0.0026 35 1 8.0075 1.9066 -0.8873 36 1 8.0068 1.9077 0.8926 37 1 7.6641 -0.0273 2.1020 38 1 7.0244 -1.4185 1.1832 39 1 12.1680 -3.4436 2.3961 40 1 11.0878 -1.3518 1.1309 41 1 10.0445 -2.1898 -0.0569 42 1 11.2501 0.0407 -1.3779 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958255375.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:06 Heat of formation + Delta-G solvation = -58.994406 kcal Electronic energy + Delta-G solvation = -26699.052688 eV Core-core repulsion = 22680.152472 eV Total energy + Delta-G solvation = -4018.900215 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.51548 -40.90388 -39.83134 -39.17325 -36.67050 -36.25770 -35.16660 -34.00031 -32.64076 -31.46902 -29.37431 -28.53382 -27.57469 -26.54278 -25.25611 -24.48861 -22.54157 -21.86402 -21.37040 -19.96640 -19.33499 -18.90954 -18.41945 -17.90782 -17.58164 -17.09835 -16.89986 -16.56630 -16.53078 -15.77516 -15.74021 -15.59426 -15.23479 -14.94028 -14.74730 -14.67948 -14.32962 -14.03210 -13.68935 -13.27834 -13.11711 -12.95701 -12.73545 -12.42665 -12.39135 -12.38190 -12.34549 -12.07242 -11.92266 -11.89568 -11.73181 -11.31447 -10.85043 -10.73984 -10.46206 -10.30916 -10.14651 -8.93829 -7.80534 -5.26050 -0.69319 -0.11116 1.37422 1.46756 1.49731 1.54767 1.56100 1.85323 2.47108 2.64875 2.84411 3.15474 3.25769 3.29874 3.50921 3.58116 3.73629 3.82937 3.89483 4.08697 4.18121 4.37870 4.40341 4.41439 4.44126 4.54788 4.59489 4.70503 4.71729 4.85992 4.94235 4.97393 5.14978 5.27269 5.41913 5.43816 5.47099 5.72880 6.00108 6.23739 6.26472 6.76608 6.89821 6.91635 7.06918 7.72586 8.35327 9.21065 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013808 B = 0.002904 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.301060 B = 9638.876672 C =10967.499609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.308 6.308 3 C 0.486 3.514 4 N -0.554 5.554 5 C 0.204 3.796 6 C -0.201 4.201 7 C 0.152 3.848 8 C 0.570 3.430 9 O -0.547 6.547 10 N -0.696 5.696 11 C 0.144 3.856 12 C -0.090 4.090 13 H 0.089 0.911 14 C 0.139 3.861 15 N -0.623 5.623 16 C -0.243 4.243 17 H 0.082 0.918 18 C -0.064 4.064 19 N -0.948 5.948 20 Si 0.982 3.018 21 H -0.279 1.279 22 H -0.292 1.292 23 H -0.276 1.276 24 C 0.133 3.867 25 C 0.100 3.900 26 H 0.073 0.927 27 O -0.568 6.568 28 N -0.529 5.529 29 H 0.127 0.873 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.232 0.768 33 H 0.182 0.818 34 H 0.416 0.584 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.033 0.967 38 H 0.029 0.971 39 H 0.249 0.751 40 H 0.081 0.919 41 H -0.009 1.009 42 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.107 13.710 -6.603 25.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.210 6.210 3 C 0.183 3.817 4 N -0.284 5.284 5 C 0.037 3.963 6 C -0.225 4.225 7 C 0.006 3.994 8 C 0.354 3.646 9 O -0.424 6.424 10 N -0.347 5.347 11 C 0.020 3.980 12 C -0.109 4.109 13 H 0.107 0.893 14 C 0.014 3.986 15 N -0.350 5.350 16 C -0.372 4.372 17 H 0.100 0.900 18 C -0.257 4.257 19 N -0.597 5.597 20 Si 0.810 3.190 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.202 1.202 24 C 0.007 3.993 25 C 0.039 3.961 26 H 0.091 0.909 27 O -0.375 6.375 28 N -0.259 5.259 29 H 0.145 0.855 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.248 0.752 33 H 0.200 0.800 34 H 0.253 0.747 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.047 0.953 39 H 0.059 0.941 40 H 0.099 0.901 41 H 0.009 0.991 42 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -20.543 13.073 -6.656 25.243 hybrid contribution 1.010 -0.681 0.880 1.502 sum -19.533 12.392 -5.776 23.843 Atomic orbital electron populations 1.23298 0.73390 1.05476 1.03299 1.86116 1.25601 1.22472 1.86800 1.20727 0.85527 0.85806 0.89666 1.68146 1.41254 0.99668 1.19315 1.23945 0.91979 0.95128 0.85261 1.23099 0.96259 1.00658 1.02441 1.21351 0.94077 0.89129 0.94841 1.17938 0.85462 0.84166 0.77028 1.90785 1.70880 1.29596 1.51184 1.45910 1.07521 1.09397 1.71839 1.21335 0.78153 0.95581 1.02900 1.22242 0.94938 0.95487 0.98270 0.89271 1.21493 0.90170 0.93211 0.93690 1.44591 1.13051 1.54363 1.23002 1.19431 0.99707 1.20181 0.97893 0.90031 1.25634 0.96175 1.01989 1.01880 1.69993 1.05461 1.46616 1.37652 0.85102 0.76547 0.78411 0.78962 1.20564 1.21796 1.20170 1.22341 0.95418 0.92194 0.89328 1.22969 0.92732 0.97225 0.83182 0.90899 1.86345 1.27847 1.97147 1.26190 1.67291 1.09398 1.30064 1.19113 0.85529 0.91354 0.91177 0.75154 0.80019 0.74659 0.89963 0.91010 0.94877 0.95317 0.94147 0.90079 0.99112 0.75547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.36 113.37 1.17 1.68 16 2 O -0.31 -6.93 10.55 -87.61 -0.92 -7.85 16 3 C 0.49 11.40 8.48 180.61 1.53 12.94 16 4 N -0.55 -9.87 9.20 -313.45 -2.88 -12.75 16 5 C 0.20 2.44 11.30 84.78 0.96 3.40 16 6 C -0.20 -3.29 9.71 22.70 0.22 -3.07 16 7 C 0.15 3.65 6.79 41.98 0.29 3.94 16 8 C 0.57 15.91 7.83 86.97 0.68 16.60 16 9 O -0.55 -17.25 16.42 -3.64 -0.06 -17.31 16 10 N -0.70 -19.55 5.39 -465.37 -2.51 -22.06 16 11 C 0.14 4.26 4.99 86.38 0.43 4.69 16 12 C -0.09 -3.12 2.75 -9.60 -0.03 -3.14 16 13 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 14 C 0.14 5.74 6.52 86.73 0.57 6.31 16 15 N -0.62 -32.15 3.39 -691.99 -2.35 -34.50 16 16 C -0.24 -13.68 10.27 84.03 0.86 -12.82 16 17 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 18 C -0.06 -3.62 5.49 84.86 0.47 -3.15 16 19 N -0.95 -55.81 10.09 21.65 0.22 -55.59 16 20 Si 0.98 45.48 29.55 68.60 2.03 47.51 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 22 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 24 C 0.13 6.50 5.62 86.86 0.49 6.99 16 25 C 0.10 3.72 3.88 31.99 0.12 3.84 16 26 H 0.07 2.59 8.05 -2.39 -0.02 2.57 16 27 O -0.57 -18.78 13.47 -148.98 -2.01 -20.79 16 28 N -0.53 -13.89 9.73 -302.71 -2.94 -16.83 16 29 H 0.13 0.99 8.14 -2.39 -0.02 0.98 16 30 H 0.07 0.79 8.09 -2.39 -0.02 0.77 16 31 H 0.07 0.78 8.09 -2.39 -0.02 0.76 16 32 H 0.23 0.32 8.06 -2.91 -0.02 0.30 16 33 H 0.18 2.32 7.73 -2.91 -0.02 2.30 16 34 H 0.42 11.53 7.71 -92.71 -0.71 10.81 16 35 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.07 2.20 8.06 -2.39 -0.02 2.18 16 37 H 0.03 1.34 7.77 -2.39 -0.02 1.33 16 38 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 40 H 0.08 4.43 5.87 -2.39 -0.01 4.42 16 41 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 42 H 0.39 9.98 9.12 -74.06 -0.68 9.31 16 Total: -1.00 -74.64 358.52 -3.99 -78.63 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: -0.32 Total: 23.33 kcal Atomic # 6 Polarization: 30.44 SS G_CDS: 7.76 Total: 38.20 kcal Atomic # 7 Polarization: -131.25 SS G_CDS: -10.47 Total: -141.72 kcal Atomic # 8 Polarization: -42.96 SS G_CDS: -2.99 Total: -45.95 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -74.64 -3.99 -78.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958255375.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.634 kcal (2) G-P(sol) polarization free energy of solvation -74.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds