Wall clock time and date at job start Fri Apr 10 2020 18:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35667 * 117.00142 * 2 1 4 4 C 1.39497 * 120.01095 * 180.02562 * 3 2 1 5 5 N 1.31952 * 120.11008 * 179.97438 * 4 3 2 6 6 C 1.32191 * 120.14399 * 359.71612 * 5 4 3 7 7 C 1.39247 * 120.02439 * 0.56327 * 6 5 4 8 8 C 1.48121 * 120.05915 * 179.70762 * 7 6 5 9 9 O 1.21518 * 120.00202 * 359.72945 * 8 7 6 10 10 N 1.34781 * 120.00021 * 179.72243 * 8 7 6 11 11 C 1.46500 * 119.99697 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.46719 * 180.02562 * 11 10 8 13 13 H 1.08995 * 110.64028 * 303.31454 * 12 11 10 14 14 C 1.54324 * 110.71890 * 66.45585 * 12 11 10 15 15 N 1.47020 * 107.39983 * 140.47837 * 14 12 11 16 16 C 1.36946 * 125.64749 * 181.10549 * 15 14 12 17 17 H 1.08000 * 119.99920 * 359.97438 * 16 15 14 18 18 C 1.38814 * 119.99867 * 180.02562 * 16 15 14 19 19 N 1.31617 * 119.99930 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99829 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47105 * 89.99400 * 20 18 16 22 22 H 1.48501 * 109.47179 * 209.99958 * 20 18 16 23 23 H 1.48502 * 109.47052 * 329.99719 * 20 18 16 24 24 C 1.47743 * 108.53125 * 1.18235 * 15 14 12 25 25 C 1.54909 * 104.83995 * 335.74644 * 24 15 14 26 26 H 1.09001 * 111.03628 * 155.18095 * 25 24 15 27 27 O 1.42891 * 111.00999 * 279.02161 * 25 24 15 28 28 N 1.32160 * 120.01057 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.46658 * 59.99849 * 1 2 3 30 30 H 1.09003 * 109.47230 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47121 * 299.99731 * 1 2 3 32 32 H 1.07996 * 119.94605 * 359.96222 * 4 3 2 33 33 H 1.07996 * 119.99227 * 180.29355 * 6 5 4 34 34 H 0.97000 * 119.99671 * 0.02562 * 10 8 7 35 35 H 1.08996 * 109.47222 * 60.01303 * 11 10 8 36 36 H 1.08997 * 109.47438 * 300.00126 * 11 10 8 37 37 H 1.09002 * 109.88322 * 259.97367 * 14 12 11 38 38 H 1.09000 * 109.88025 * 20.98532 * 14 12 11 39 39 H 0.96998 * 119.99524 * 180.02562 * 19 18 16 40 40 H 1.09003 * 110.29227 * 216.94505 * 24 15 14 41 41 H 1.08996 * 110.53057 * 94.67717 * 24 15 14 42 42 H 0.96705 * 114.00245 * 292.19608 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4380 1.2820 -0.0005 5 7 4.0391 2.4567 -0.0011 6 6 3.3239 3.5684 -0.0067 7 6 1.9330 3.5021 -0.0003 8 6 1.1309 4.7473 -0.0001 9 8 1.6865 5.8280 -0.0006 10 7 -0.2153 4.6817 0.0004 11 6 -1.0086 5.9134 0.0012 12 6 -2.4975 5.5609 0.0024 13 1 -2.7430 4.9274 -0.8499 14 6 -2.8949 4.8739 1.3259 15 7 -4.2169 5.3903 1.7096 16 6 -4.9119 5.0450 2.8379 17 1 -4.4916 4.3350 3.5349 18 6 -6.1570 5.6066 3.0853 19 7 -6.6694 6.4714 2.2356 20 14 -7.1053 5.1350 4.6240 21 1 -6.7450 6.0582 5.7299 22 1 -8.5628 5.2290 4.3555 23 1 -6.7619 3.7426 5.0098 24 6 -4.6684 6.3414 0.6731 25 6 -3.3660 6.8467 0.0038 26 1 -3.5565 7.1905 -1.0129 27 8 -2.7553 7.8764 0.7838 28 7 1.3254 2.3173 0.0005 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.0255 0.3758 -0.0003 33 1 3.8184 4.5284 -0.0119 34 1 -0.6588 3.8191 0.0011 35 1 -0.7739 6.4973 -0.8888 36 1 -0.7730 6.4968 0.8912 37 1 -2.9458 3.7946 1.1826 38 1 -2.1653 5.1110 2.1002 39 1 -7.5393 6.8640 2.4087 40 1 -5.2065 7.1717 1.1306 41 1 -5.3003 5.8380 -0.0585 42 1 -3.2618 8.6996 0.8143 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958462608.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:11 Heat of formation + Delta-G solvation = -35.218264 kcal Electronic energy + Delta-G solvation = -27098.049234 eV Core-core repulsion = 23080.180030 eV Total energy + Delta-G solvation = -4017.869205 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.76680 -39.70718 -38.69220 -38.16865 -35.09546 -34.65558 -34.40042 -32.19796 -31.52495 -29.74530 -28.03408 -27.75413 -26.12403 -25.14080 -24.13154 -23.34886 -21.23755 -20.30717 -19.78594 -18.73263 -18.61312 -17.33805 -17.16917 -16.94288 -16.67915 -16.23960 -15.74783 -15.38680 -14.89550 -14.84695 -14.46696 -14.11503 -14.08134 -13.82404 -13.38079 -13.23621 -12.73300 -12.47976 -12.37389 -12.01674 -11.99248 -11.93799 -11.44615 -11.28112 -11.27698 -10.82853 -10.71558 -10.70051 -10.40242 -10.16892 -10.00878 -9.85752 -9.57127 -9.21146 -9.14173 -8.96869 -8.71599 -6.87597 -5.72321 -3.12059 0.03903 0.68026 2.48592 2.52733 2.88422 3.36743 3.41865 3.43280 3.44198 3.54191 3.88885 4.05055 4.43422 4.65105 4.73499 4.77243 4.94382 4.99274 5.01272 5.09347 5.26788 5.33404 5.36236 5.48018 5.56381 5.65368 5.85555 5.98324 6.07373 6.27960 6.35922 6.40683 6.55100 6.59630 6.66510 6.81251 7.18707 7.24026 7.46093 7.53986 7.71693 8.03298 8.19933 8.33780 9.14958 9.76619 10.40837 11.32974 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014994 B = 0.003101 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.984247 B = 9028.520697 C =10290.194542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.298 6.298 3 C 0.276 3.724 4 C 0.065 3.935 5 N -0.405 5.405 6 C 0.064 3.936 7 C 0.080 3.920 8 C 0.570 3.430 9 O -0.526 6.526 10 N -0.702 5.702 11 C 0.137 3.863 12 C -0.107 4.107 13 H 0.086 0.914 14 C 0.145 3.855 15 N -0.597 5.597 16 C -0.219 4.219 17 H 0.077 0.923 18 C -0.012 4.012 19 N -0.925 5.925 20 Si 0.915 3.085 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.126 3.874 25 C 0.083 3.917 26 H 0.055 0.945 27 O -0.557 6.557 28 N -0.474 5.474 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.183 0.817 33 H 0.187 0.813 34 H 0.409 0.591 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.018 0.982 38 H 0.028 0.972 39 H 0.252 0.748 40 H 0.112 0.888 41 H 0.020 0.980 42 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.204 -8.755 -8.373 19.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.203 6.203 3 C 0.091 3.909 4 C -0.100 4.100 5 N -0.119 5.119 6 C -0.094 4.094 7 C -0.060 4.060 8 C 0.352 3.648 9 O -0.402 6.402 10 N -0.352 5.352 11 C 0.014 3.986 12 C -0.126 4.126 13 H 0.104 0.896 14 C 0.019 3.981 15 N -0.323 5.323 16 C -0.347 4.347 17 H 0.095 0.905 18 C -0.207 4.207 19 N -0.574 5.574 20 Si 0.746 3.254 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.208 1.208 24 C 0.001 3.999 25 C 0.022 3.978 26 H 0.073 0.927 27 O -0.363 6.363 28 N -0.207 5.207 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.085 0.915 32 H 0.200 0.800 33 H 0.204 0.796 34 H 0.245 0.755 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.036 0.964 38 H 0.046 0.954 39 H 0.063 0.937 40 H 0.129 0.871 41 H 0.038 0.962 42 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 15.892 -8.629 -8.170 19.843 hybrid contribution -1.630 -0.344 0.665 1.794 sum 14.262 -8.973 -7.504 18.445 Atomic orbital electron populations 1.23053 0.76133 1.03901 1.03154 1.86283 1.23737 1.22983 1.87249 1.20976 0.91083 0.85413 0.93416 1.23241 0.89675 0.97884 0.99220 1.68640 1.38001 0.97661 1.07589 1.23661 0.90651 0.98651 0.96416 1.22041 0.93552 0.91508 0.98944 1.17595 0.82581 0.86760 0.77835 1.90824 1.71353 1.27907 1.50074 1.45990 1.05448 1.11452 1.72287 1.21374 0.88951 0.84983 1.03276 1.22512 0.92959 0.97312 0.99804 0.89569 1.21293 0.89188 0.95058 0.92590 1.44404 1.15765 1.49120 1.23014 1.19078 0.98284 1.20273 0.97057 0.90500 1.24758 0.97487 0.99572 0.98873 1.69740 1.18406 1.33099 1.36187 0.86056 0.79077 0.77919 0.82350 1.21555 1.21658 1.20766 1.22631 0.91105 0.95968 0.90234 1.23182 0.94667 0.86888 0.93019 0.92691 1.86385 1.50501 1.25119 1.74286 1.67972 1.40119 0.98142 1.14468 0.91791 0.87862 0.91540 0.80042 0.79604 0.75534 0.91315 0.89628 0.96392 0.95439 0.93732 0.87064 0.96246 0.77738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.39 101.05 1.05 1.30 16 2 O -0.30 -2.73 10.49 -18.70 -0.20 -2.92 16 3 C 0.28 2.81 7.50 -16.94 -0.13 2.68 16 4 C 0.06 0.58 11.18 -17.03 -0.19 0.39 16 5 N -0.41 -4.25 10.48 -12.58 -0.13 -4.38 16 6 C 0.06 0.71 10.76 -17.02 -0.18 0.53 16 7 C 0.08 0.97 6.75 -82.86 -0.56 0.41 16 8 C 0.57 8.10 7.81 -12.20 -0.10 8.01 16 9 O -0.53 -8.76 16.34 5.35 0.09 -8.67 16 10 N -0.70 -9.66 5.39 -61.16 -0.33 -9.99 16 11 C 0.14 2.10 4.59 -4.04 -0.02 2.08 16 12 C -0.11 -1.76 2.95 -88.78 -0.26 -2.02 16 13 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 14 C 0.14 2.94 6.52 -3.06 -0.02 2.92 16 15 N -0.60 -14.92 3.41 -169.81 -0.58 -15.50 16 16 C -0.22 -6.02 10.28 -15.05 -0.15 -6.18 16 17 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 18 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 19 N -0.93 -26.23 10.11 55.49 0.56 -25.67 16 20 Si 0.92 21.84 29.55 -169.99 -5.02 16.81 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.13 2.89 5.65 -2.35 -0.01 2.88 16 25 C 0.08 1.49 4.17 -24.58 -0.10 1.38 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 O -0.56 -10.03 12.22 -35.23 -0.43 -10.46 16 28 N -0.47 -5.44 8.60 -9.69 -0.08 -5.53 16 29 H 0.06 0.48 8.11 -51.93 -0.42 0.06 16 30 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 32 H 0.18 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.19 1.86 7.64 -52.49 -0.40 1.46 16 34 H 0.41 5.17 7.68 -40.82 -0.31 4.86 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.09 1.53 7.44 -51.93 -0.39 1.15 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.03 0.59 7.76 -51.93 -0.40 0.19 16 39 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.11 2.87 5.89 -51.93 -0.31 2.57 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.38 5.50 9.12 45.56 0.42 5.91 16 LS Contribution 356.71 15.07 5.38 5.38 Total: -1.00 -32.77 356.71 -6.26 -39.03 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -4.74 Total: 7.95 kcal Atomic # 6 Polarization: 14.73 SS G_CDS: -0.77 Total: 13.96 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: -0.56 Total: -61.07 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.54 Total: -22.06 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.77 -6.26 -39.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958462608.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.810 kcal (2) G-P(sol) polarization free energy of solvation -32.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds