Wall clock time and date at job start Fri Apr 10 2020 18:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35667 * 117.00142 * 2 1 4 4 C 1.39497 * 120.01095 * 180.02562 * 3 2 1 5 5 N 1.31952 * 120.11008 * 179.97438 * 4 3 2 6 6 C 1.32191 * 120.14399 * 359.71612 * 5 4 3 7 7 C 1.39247 * 120.02439 * 0.56327 * 6 5 4 8 8 C 1.48121 * 120.05915 * 179.70762 * 7 6 5 9 9 O 1.21518 * 120.00202 * 359.72945 * 8 7 6 10 10 N 1.34781 * 120.00021 * 179.72243 * 8 7 6 11 11 C 1.46500 * 119.99697 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.46719 * 180.02562 * 11 10 8 13 13 H 1.08995 * 110.64028 * 303.31454 * 12 11 10 14 14 C 1.54324 * 110.71890 * 66.45585 * 12 11 10 15 15 N 1.47020 * 107.39983 * 140.47837 * 14 12 11 16 16 C 1.36946 * 125.64749 * 181.10549 * 15 14 12 17 17 H 1.08000 * 119.99920 * 359.97438 * 16 15 14 18 18 C 1.38814 * 119.99867 * 180.02562 * 16 15 14 19 19 N 1.31617 * 119.99930 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99829 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47105 * 89.99400 * 20 18 16 22 22 H 1.48501 * 109.47179 * 209.99958 * 20 18 16 23 23 H 1.48502 * 109.47052 * 329.99719 * 20 18 16 24 24 C 1.47743 * 108.53125 * 1.18235 * 15 14 12 25 25 C 1.54909 * 104.83995 * 335.74644 * 24 15 14 26 26 H 1.09001 * 111.03628 * 155.18095 * 25 24 15 27 27 O 1.42891 * 111.00999 * 279.02161 * 25 24 15 28 28 N 1.32160 * 120.01057 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.46658 * 59.99849 * 1 2 3 30 30 H 1.09003 * 109.47230 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47121 * 299.99731 * 1 2 3 32 32 H 1.07996 * 119.94605 * 359.96222 * 4 3 2 33 33 H 1.07996 * 119.99227 * 180.29355 * 6 5 4 34 34 H 0.97000 * 119.99671 * 0.02562 * 10 8 7 35 35 H 1.08996 * 109.47222 * 60.01303 * 11 10 8 36 36 H 1.08997 * 109.47438 * 300.00126 * 11 10 8 37 37 H 1.09002 * 109.88322 * 259.97367 * 14 12 11 38 38 H 1.09000 * 109.88025 * 20.98532 * 14 12 11 39 39 H 0.96998 * 119.99524 * 180.02562 * 19 18 16 40 40 H 1.09003 * 110.29227 * 216.94505 * 24 15 14 41 41 H 1.08996 * 110.53057 * 94.67717 * 24 15 14 42 42 H 0.96705 * 114.00245 * 292.19608 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4380 1.2820 -0.0005 5 7 4.0391 2.4567 -0.0011 6 6 3.3239 3.5684 -0.0067 7 6 1.9330 3.5021 -0.0003 8 6 1.1309 4.7473 -0.0001 9 8 1.6865 5.8280 -0.0006 10 7 -0.2153 4.6817 0.0004 11 6 -1.0086 5.9134 0.0012 12 6 -2.4975 5.5609 0.0024 13 1 -2.7430 4.9274 -0.8499 14 6 -2.8949 4.8739 1.3259 15 7 -4.2169 5.3903 1.7096 16 6 -4.9119 5.0450 2.8379 17 1 -4.4916 4.3350 3.5349 18 6 -6.1570 5.6066 3.0853 19 7 -6.6694 6.4714 2.2356 20 14 -7.1053 5.1350 4.6240 21 1 -6.7450 6.0582 5.7299 22 1 -8.5628 5.2290 4.3555 23 1 -6.7619 3.7426 5.0098 24 6 -4.6684 6.3414 0.6731 25 6 -3.3660 6.8467 0.0038 26 1 -3.5565 7.1905 -1.0129 27 8 -2.7553 7.8764 0.7838 28 7 1.3254 2.3173 0.0005 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.0255 0.3758 -0.0003 33 1 3.8184 4.5284 -0.0119 34 1 -0.6588 3.8191 0.0011 35 1 -0.7739 6.4973 -0.8888 36 1 -0.7730 6.4968 0.8912 37 1 -2.9458 3.7946 1.1826 38 1 -2.1653 5.1110 2.1002 39 1 -7.5393 6.8640 2.4087 40 1 -5.2065 7.1717 1.1306 41 1 -5.3003 5.8380 -0.0585 42 1 -3.2618 8.6996 0.8143 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958462608.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:11 Heat of formation + Delta-G solvation = -63.730236 kcal Electronic energy + Delta-G solvation = -27099.285606 eV Core-core repulsion = 23080.180030 eV Total energy + Delta-G solvation = -4019.105576 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.59361 -40.82929 -39.82703 -39.28976 -36.35621 -36.22068 -35.39099 -33.93376 -32.39455 -31.35982 -29.48717 -28.64311 -27.49854 -26.48868 -25.14267 -24.60403 -22.53020 -21.82938 -21.20005 -19.73637 -19.44569 -19.09477 -18.18876 -17.91731 -17.54503 -17.43761 -16.93295 -16.79906 -16.49421 -15.89145 -15.62156 -15.55707 -15.27155 -15.10213 -14.60339 -14.41550 -14.11110 -13.95120 -13.67734 -13.19247 -13.17820 -13.04849 -12.74754 -12.65377 -12.64116 -12.35851 -12.09715 -12.06711 -11.90682 -11.83336 -11.81950 -11.47687 -10.81754 -10.67030 -10.46709 -10.25409 -9.89560 -8.86293 -7.79689 -5.21597 -0.80493 -0.12760 1.45595 1.47256 1.52373 1.55317 1.76627 1.84588 2.48093 2.56266 2.67540 3.09636 3.27462 3.27696 3.35497 3.58802 3.75251 3.88766 3.94567 3.98454 4.00617 4.31483 4.40274 4.40820 4.42432 4.58727 4.63366 4.75461 4.80901 4.88855 4.92141 4.99522 5.22766 5.32606 5.39300 5.50006 5.76694 5.78507 5.88381 6.26590 6.28884 6.49281 6.93283 6.98330 7.10410 7.76876 8.40195 9.22721 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014994 B = 0.003101 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.984247 B = 9028.520697 C =10290.194542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.297 6.297 3 C 0.270 3.730 4 C 0.083 3.917 5 N -0.415 5.415 6 C 0.066 3.934 7 C 0.062 3.938 8 C 0.572 3.428 9 O -0.555 6.555 10 N -0.697 5.697 11 C 0.152 3.848 12 C -0.092 4.092 13 H 0.113 0.887 14 C 0.143 3.857 15 N -0.620 5.620 16 C -0.237 4.237 17 H 0.075 0.925 18 C -0.064 4.064 19 N -0.946 5.946 20 Si 0.977 3.023 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.272 1.272 24 C 0.126 3.874 25 C 0.095 3.905 26 H 0.092 0.908 27 O -0.569 6.569 28 N -0.482 5.482 29 H 0.063 0.937 30 H 0.129 0.871 31 H 0.056 0.944 32 H 0.218 0.782 33 H 0.192 0.808 34 H 0.415 0.585 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.029 0.971 38 H 0.012 0.988 39 H 0.247 0.753 40 H 0.080 0.920 41 H 0.003 0.997 42 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.355 -10.356 -9.083 21.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.201 6.201 3 C 0.083 3.917 4 C -0.083 4.083 5 N -0.129 5.129 6 C -0.091 4.091 7 C -0.077 4.077 8 C 0.356 3.644 9 O -0.433 6.433 10 N -0.347 5.347 11 C 0.028 3.972 12 C -0.111 4.111 13 H 0.131 0.869 14 C 0.018 3.982 15 N -0.346 5.346 16 C -0.366 4.366 17 H 0.093 0.907 18 C -0.256 4.256 19 N -0.596 5.596 20 Si 0.806 3.194 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.197 1.197 24 C 0.001 3.999 25 C 0.034 3.966 26 H 0.110 0.890 27 O -0.376 6.376 28 N -0.215 5.215 29 H 0.082 0.918 30 H 0.147 0.853 31 H 0.075 0.925 32 H 0.235 0.765 33 H 0.209 0.791 34 H 0.252 0.748 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.030 0.970 39 H 0.057 0.943 40 H 0.097 0.903 41 H 0.021 0.979 42 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 17.054 -10.227 -8.888 21.782 hybrid contribution -1.954 0.046 0.903 2.153 sum 15.100 -10.181 -7.986 19.886 Atomic orbital electron populations 1.23217 0.75328 1.05463 1.02610 1.86298 1.24508 1.22245 1.87037 1.21229 0.91685 0.85346 0.93390 1.23849 0.89557 0.98524 0.96325 1.68733 1.37933 0.97932 1.08263 1.23746 0.90268 0.99295 0.95766 1.21693 0.93611 0.90989 1.01412 1.17836 0.82527 0.87158 0.76866 1.90801 1.71844 1.29204 1.51467 1.45881 1.05437 1.11215 1.72200 1.21083 0.88183 0.85383 1.02535 1.22457 0.93455 0.96586 0.98591 0.86855 1.21400 0.86853 0.95859 0.94082 1.44706 1.17155 1.49892 1.22852 1.19397 0.98873 1.20248 0.98122 0.90678 1.25539 0.98475 0.99928 1.01692 1.69979 1.18298 1.33842 1.37486 0.85097 0.77420 0.77951 0.78972 1.21554 1.21795 1.19679 1.22505 0.93387 0.94472 0.89561 1.23078 0.92122 0.87396 0.93958 0.89024 1.86371 1.50784 1.25858 1.74635 1.67871 1.40665 0.98294 1.14701 0.91845 0.85327 0.92542 0.76544 0.79146 0.74787 0.90115 0.92316 0.95345 0.97035 0.94293 0.90258 0.97918 0.76207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.39 113.37 1.18 1.56 16 2 O -0.30 -4.74 10.49 -89.83 -0.94 -5.68 16 3 C 0.27 4.93 7.50 84.95 0.64 5.57 16 4 C 0.08 1.28 11.18 84.98 0.95 2.23 16 5 N -0.41 -7.89 10.48 -193.72 -2.03 -9.92 16 6 C 0.07 1.40 10.76 84.88 0.91 2.31 16 7 C 0.06 1.46 6.75 41.81 0.28 1.74 16 8 C 0.57 15.99 7.81 86.87 0.68 16.66 16 9 O -0.55 -18.43 16.34 -3.77 -0.06 -18.49 16 10 N -0.70 -18.54 5.39 -465.70 -2.51 -21.05 16 11 C 0.15 4.47 4.59 86.38 0.40 4.87 16 12 C -0.09 -2.89 2.95 -9.60 -0.03 -2.92 16 13 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 14 C 0.14 5.77 6.52 86.73 0.57 6.34 16 15 N -0.62 -31.32 3.41 -691.17 -2.35 -33.67 16 16 C -0.24 -13.26 10.28 84.03 0.86 -12.39 16 17 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 18 C -0.06 -3.57 5.49 84.86 0.47 -3.10 16 19 N -0.95 -54.77 10.11 21.65 0.22 -54.55 16 20 Si 0.98 45.30 29.55 68.60 2.03 47.32 16 21 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 22 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 C 0.13 5.84 5.65 86.79 0.49 6.33 16 25 C 0.09 3.27 4.17 31.99 0.13 3.40 16 26 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 27 O -0.57 -20.05 12.22 -148.98 -1.82 -21.87 16 28 N -0.48 -10.44 8.60 -297.48 -2.56 -13.00 16 29 H 0.06 0.85 8.11 -2.39 -0.02 0.83 16 30 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 0.87 8.11 -2.39 -0.02 0.85 16 32 H 0.22 1.64 8.06 -2.91 -0.02 1.62 16 33 H 0.19 3.72 7.64 -2.91 -0.02 3.70 16 34 H 0.42 9.99 7.68 -92.71 -0.71 9.28 16 35 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.06 2.09 7.44 -2.39 -0.02 2.07 16 37 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.01 0.50 7.76 -2.39 -0.02 0.49 16 39 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 40 H 0.08 4.20 5.89 -2.39 -0.01 4.19 16 41 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 42 H 0.39 11.16 9.12 -74.05 -0.68 10.48 16 Total: -1.00 -71.51 356.71 -2.82 -74.32 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -0.31 Total: 24.00 kcal Atomic # 6 Polarization: 25.06 SS G_CDS: 7.53 Total: 32.59 kcal Atomic # 7 Polarization: -122.96 SS G_CDS: -9.24 Total: -132.19 kcal Atomic # 8 Polarization: -43.22 SS G_CDS: -2.82 Total: -46.04 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -71.51 -2.82 -74.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958462608.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.592 kcal (2) G-P(sol) polarization free energy of solvation -71.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds