Wall clock time and date at job start Fri Apr 10 2020 18:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35669 * 116.99833 * 2 1 4 4 C 1.39495 * 120.00853 * 180.02562 * 3 2 1 5 5 N 1.31947 * 120.11335 * 179.72658 * 4 3 2 6 6 C 1.32192 * 120.14155 * 359.97438 * 5 4 3 7 7 C 1.39237 * 120.02372 * 359.97438 * 6 5 4 8 8 C 1.48135 * 120.05607 * 180.02562 * 7 6 5 9 9 O 1.21513 * 119.99989 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99708 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99790 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47154 * 179.97438 * 11 10 8 13 13 H 1.09004 * 110.88722 * 51.12678 * 12 11 10 14 14 C 1.54906 * 111.00900 * 287.19902 * 12 11 10 15 15 N 1.47419 * 104.83403 * 204.91830 * 14 12 11 16 16 C 1.36941 * 125.64994 * 204.17303 * 15 14 12 17 17 H 1.08005 * 119.99456 * 359.96633 * 16 15 14 18 18 C 1.38809 * 120.00331 * 179.97438 * 16 15 14 19 19 N 1.31620 * 120.00185 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99843 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47306 * 90.00187 * 20 18 16 22 22 H 1.48504 * 109.47150 * 209.99881 * 20 18 16 23 23 H 1.48499 * 109.47247 * 329.99638 * 20 18 16 24 24 C 1.47022 * 108.70669 * 24.12620 * 15 14 12 25 25 C 1.54328 * 107.27015 * 358.94063 * 24 15 14 26 26 H 1.09002 * 110.87110 * 219.37424 * 25 24 15 27 27 O 1.42899 * 110.71881 * 96.16815 * 25 24 15 28 28 N 1.32163 * 120.01165 * 359.72441 * 3 2 1 29 29 H 1.09000 * 109.47224 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47174 * 300.00056 * 1 2 3 31 31 H 1.09002 * 109.47215 * 59.99983 * 1 2 3 32 32 H 1.07997 * 119.94165 * 359.74098 * 4 3 2 33 33 H 1.07997 * 119.98753 * 180.02562 * 6 5 4 34 34 H 0.96995 * 120.00412 * 0.02562 * 10 8 7 35 35 H 1.09000 * 109.47396 * 300.00152 * 11 10 8 36 36 H 1.09000 * 109.47153 * 59.99797 * 11 10 8 37 37 H 1.09002 * 110.36295 * 323.75429 * 14 12 11 38 38 H 1.09000 * 110.37192 * 86.07460 * 14 12 11 39 39 H 0.96993 * 119.99870 * 180.02562 * 19 18 16 40 40 H 1.09000 * 109.88001 * 239.52588 * 24 15 14 41 41 H 1.08998 * 110.01458 * 118.43034 * 24 15 14 42 42 H 0.96705 * 113.99172 * 66.48040 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4379 1.2821 -0.0005 5 7 4.0391 2.4567 -0.0060 6 6 3.3238 3.5684 -0.0115 7 6 1.9330 3.5020 -0.0120 8 6 1.1309 4.7473 -0.0187 9 8 1.6865 5.8279 -0.0242 10 7 -0.2153 4.6817 -0.0188 11 6 -1.0087 5.9133 -0.0260 12 6 -2.4975 5.5609 -0.0251 13 1 -2.7290 4.8537 0.7715 14 6 -2.9385 5.0094 -1.4038 15 7 -4.3839 5.2900 -1.4778 16 6 -5.2900 4.6122 -2.2490 17 1 -4.9626 3.7942 -2.8736 18 6 -6.6293 4.9767 -2.2282 19 7 -7.0282 5.9740 -1.4676 20 14 -7.8651 4.0525 -3.2808 21 1 -8.4199 2.9127 -2.5072 22 1 -8.9668 4.9690 -3.6705 23 1 -7.1915 3.5413 -4.5014 24 6 -4.6916 6.4173 -0.5856 25 6 -3.3712 6.8376 0.0937 26 1 -3.5375 7.0953 1.1397 27 8 -2.7686 7.9292 -0.6044 28 7 1.3253 2.3174 -0.0055 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 4.0254 0.3759 0.0033 33 1 3.8184 4.5284 -0.0163 34 1 -0.6589 3.8191 -0.0140 35 1 -0.7738 6.5020 0.8607 36 1 -0.7732 6.4919 -0.9192 37 1 -2.4103 5.5257 -2.2054 38 1 -2.7572 3.9360 -1.4588 39 1 -7.9641 6.2284 -1.4528 40 1 -5.4141 6.1063 0.1690 41 1 -5.0934 7.2505 -1.1622 42 1 -3.2756 8.7516 -0.5610 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958462609.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:14 Heat of formation + Delta-G solvation = -37.285659 kcal Electronic energy + Delta-G solvation = -27034.113740 eV Core-core repulsion = 23016.154887 eV Total energy + Delta-G solvation = -4017.958854 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.77043 -39.70853 -38.69687 -38.21338 -35.12140 -34.74624 -34.42053 -32.17858 -31.52799 -29.75031 -28.02602 -27.76728 -26.14447 -25.12134 -24.13333 -23.36284 -21.20696 -20.28864 -19.95378 -18.74074 -18.61221 -17.37176 -17.17226 -16.96283 -16.67944 -16.26240 -15.75511 -15.39206 -14.88209 -14.85967 -14.37683 -14.12716 -14.00994 -13.75106 -13.39348 -13.30809 -12.80843 -12.61807 -12.45955 -12.01478 -11.94793 -11.93660 -11.48460 -11.29519 -11.26591 -10.87017 -10.75946 -10.63226 -10.49666 -10.11070 -10.06318 -9.83748 -9.57939 -9.22965 -9.20778 -8.97328 -8.70286 -6.90988 -5.78807 -3.11943 0.03485 0.67718 2.48761 2.52013 2.87606 3.35117 3.40631 3.42498 3.43632 3.53883 3.88515 4.04774 4.42300 4.63210 4.71328 4.76735 4.94873 4.99548 5.01995 5.05915 5.27279 5.34486 5.35886 5.49592 5.54130 5.65125 5.85069 5.97726 6.04041 6.30144 6.32289 6.37799 6.52784 6.57853 6.66140 6.83988 7.18387 7.34013 7.43939 7.45509 7.69820 8.02235 8.16272 8.19547 9.14049 9.74645 10.40072 11.33240 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014251 B = 0.003166 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.369513 B = 8842.966711 C =10488.578838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.298 6.298 3 C 0.276 3.724 4 C 0.065 3.935 5 N -0.405 5.405 6 C 0.064 3.936 7 C 0.079 3.921 8 C 0.570 3.430 9 O -0.526 6.526 10 N -0.702 5.702 11 C 0.138 3.862 12 C -0.110 4.110 13 H 0.089 0.911 14 C 0.145 3.855 15 N -0.603 5.603 16 C -0.227 4.227 17 H 0.078 0.922 18 C -0.009 4.009 19 N -0.924 5.924 20 Si 0.913 3.087 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.153 3.847 25 C 0.083 3.917 26 H 0.057 0.943 27 O -0.564 6.564 28 N -0.474 5.474 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.183 0.817 33 H 0.187 0.813 34 H 0.409 0.591 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.026 0.974 38 H 0.036 0.964 39 H 0.252 0.748 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.579 -7.599 6.303 19.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.203 6.203 3 C 0.091 3.909 4 C -0.100 4.100 5 N -0.119 5.119 6 C -0.094 4.094 7 C -0.061 4.061 8 C 0.352 3.648 9 O -0.402 6.402 10 N -0.352 5.352 11 C 0.015 3.985 12 C -0.129 4.129 13 H 0.107 0.893 14 C 0.019 3.981 15 N -0.329 5.329 16 C -0.356 4.356 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.572 5.572 20 Si 0.744 3.256 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.207 1.207 24 C 0.028 3.972 25 C 0.023 3.977 26 H 0.075 0.925 27 O -0.370 6.370 28 N -0.207 5.207 29 H 0.122 0.878 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.200 0.800 33 H 0.204 0.796 34 H 0.245 0.755 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.043 0.957 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 17.231 -7.480 6.112 19.753 hybrid contribution -1.864 -0.474 -0.408 1.966 sum 15.367 -7.954 5.703 18.219 Atomic orbital electron populations 1.23057 0.76080 1.03934 1.03176 1.86285 1.23771 1.22968 1.87227 1.20979 0.91084 0.85421 0.93385 1.23240 0.89682 0.97884 0.99216 1.68639 1.38005 0.97663 1.07591 1.23656 0.90653 0.98648 0.96446 1.22040 0.93547 0.91519 0.98971 1.17595 0.82575 0.86757 0.77825 1.90821 1.71357 1.27916 1.50096 1.45997 1.05446 1.11464 1.72278 1.21310 0.89043 0.84905 1.03227 1.22686 0.92375 0.97244 1.00638 0.89253 1.21580 0.86701 0.97078 0.92745 1.44366 1.01498 1.36519 1.50523 1.19069 0.87568 1.10920 1.17994 0.90398 1.24792 0.97038 0.98620 1.00029 1.69925 1.15244 1.29742 1.42318 0.86098 0.81053 0.78721 0.79763 1.21591 1.21642 1.20682 1.21851 0.90629 0.91456 0.93251 1.23130 0.94341 0.85908 0.94299 0.92465 1.86401 1.51589 1.21611 1.77382 1.67977 1.40106 0.98139 1.14463 0.87844 0.91753 0.91543 0.80044 0.79614 0.75501 0.91252 0.89880 0.95668 0.94546 0.93719 0.92954 0.93177 0.77711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.39 101.05 1.05 1.30 16 2 O -0.30 -2.72 10.49 -18.71 -0.20 -2.92 16 3 C 0.28 2.79 7.50 -16.94 -0.13 2.66 16 4 C 0.06 0.58 11.18 -17.03 -0.19 0.39 16 5 N -0.41 -4.20 10.48 -12.59 -0.13 -4.33 16 6 C 0.06 0.70 10.76 -17.03 -0.18 0.51 16 7 C 0.08 0.96 6.75 -82.86 -0.56 0.40 16 8 C 0.57 7.95 7.81 -12.20 -0.10 7.86 16 9 O -0.53 -8.61 16.34 5.35 0.09 -8.52 16 10 N -0.70 -9.47 5.49 -61.16 -0.34 -9.81 16 11 C 0.14 2.07 4.60 -4.04 -0.02 2.05 16 12 C -0.11 -1.81 2.97 -88.47 -0.26 -2.07 16 13 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 14 C 0.15 2.92 6.64 -2.53 -0.02 2.90 16 15 N -0.60 -14.95 3.39 -170.07 -0.58 -15.52 16 16 C -0.23 -6.20 10.28 -15.06 -0.15 -6.36 16 17 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 18 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 19 N -0.92 -26.41 10.31 55.49 0.57 -25.83 16 20 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C 0.15 3.53 5.14 -3.06 -0.02 3.51 16 25 C 0.08 1.47 4.09 -24.89 -0.10 1.37 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 O -0.56 -9.54 12.24 -35.23 -0.43 -9.97 16 28 N -0.47 -5.39 8.60 -9.69 -0.08 -5.47 16 29 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.50 8.11 -51.93 -0.42 0.07 16 31 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 32 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.19 1.82 7.64 -52.49 -0.40 1.42 16 34 H 0.41 5.09 7.82 -40.82 -0.32 4.77 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.42 7.55 -51.93 -0.39 1.03 16 37 H 0.03 0.54 7.91 -51.93 -0.41 0.13 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.05 1.32 7.38 -51.93 -0.38 0.94 16 41 H 0.05 1.28 7.43 -51.93 -0.39 0.90 16 42 H 0.38 5.00 9.12 45.56 0.42 5.41 16 LS Contribution 357.80 15.07 5.39 5.39 Total: -1.00 -32.77 357.80 -6.30 -39.07 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -4.80 Total: 7.07 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: -0.77 Total: 14.19 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -0.56 Total: -60.97 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.54 Total: -21.42 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.77 -6.30 -39.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958462609.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.785 kcal (2) G-P(sol) polarization free energy of solvation -32.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds