Wall clock time and date at job start Fri Apr 10 2020 18:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35669 * 116.99833 * 2 1 4 4 C 1.39495 * 120.00853 * 180.02562 * 3 2 1 5 5 N 1.31947 * 120.11335 * 179.72658 * 4 3 2 6 6 C 1.32192 * 120.14155 * 359.97438 * 5 4 3 7 7 C 1.39237 * 120.02372 * 359.97438 * 6 5 4 8 8 C 1.48135 * 120.05607 * 180.02562 * 7 6 5 9 9 O 1.21513 * 119.99989 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99708 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99790 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47154 * 179.97438 * 11 10 8 13 13 H 1.09004 * 110.88722 * 51.12678 * 12 11 10 14 14 C 1.54906 * 111.00900 * 287.19902 * 12 11 10 15 15 N 1.47419 * 104.83403 * 204.91830 * 14 12 11 16 16 C 1.36941 * 125.64994 * 204.17303 * 15 14 12 17 17 H 1.08005 * 119.99456 * 359.96633 * 16 15 14 18 18 C 1.38809 * 120.00331 * 179.97438 * 16 15 14 19 19 N 1.31620 * 120.00185 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99843 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47306 * 90.00187 * 20 18 16 22 22 H 1.48504 * 109.47150 * 209.99881 * 20 18 16 23 23 H 1.48499 * 109.47247 * 329.99638 * 20 18 16 24 24 C 1.47022 * 108.70669 * 24.12620 * 15 14 12 25 25 C 1.54328 * 107.27015 * 358.94063 * 24 15 14 26 26 H 1.09002 * 110.87110 * 219.37424 * 25 24 15 27 27 O 1.42899 * 110.71881 * 96.16815 * 25 24 15 28 28 N 1.32163 * 120.01165 * 359.72441 * 3 2 1 29 29 H 1.09000 * 109.47224 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47174 * 300.00056 * 1 2 3 31 31 H 1.09002 * 109.47215 * 59.99983 * 1 2 3 32 32 H 1.07997 * 119.94165 * 359.74098 * 4 3 2 33 33 H 1.07997 * 119.98753 * 180.02562 * 6 5 4 34 34 H 0.96995 * 120.00412 * 0.02562 * 10 8 7 35 35 H 1.09000 * 109.47396 * 300.00152 * 11 10 8 36 36 H 1.09000 * 109.47153 * 59.99797 * 11 10 8 37 37 H 1.09002 * 110.36295 * 323.75429 * 14 12 11 38 38 H 1.09000 * 110.37192 * 86.07460 * 14 12 11 39 39 H 0.96993 * 119.99870 * 180.02562 * 19 18 16 40 40 H 1.09000 * 109.88001 * 239.52588 * 24 15 14 41 41 H 1.08998 * 110.01458 * 118.43034 * 24 15 14 42 42 H 0.96705 * 113.99172 * 66.48040 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4379 1.2821 -0.0005 5 7 4.0391 2.4567 -0.0060 6 6 3.3238 3.5684 -0.0115 7 6 1.9330 3.5020 -0.0120 8 6 1.1309 4.7473 -0.0187 9 8 1.6865 5.8279 -0.0242 10 7 -0.2153 4.6817 -0.0188 11 6 -1.0087 5.9133 -0.0260 12 6 -2.4975 5.5609 -0.0251 13 1 -2.7290 4.8537 0.7715 14 6 -2.9385 5.0094 -1.4038 15 7 -4.3839 5.2900 -1.4778 16 6 -5.2900 4.6122 -2.2490 17 1 -4.9626 3.7942 -2.8736 18 6 -6.6293 4.9767 -2.2282 19 7 -7.0282 5.9740 -1.4676 20 14 -7.8651 4.0525 -3.2808 21 1 -8.4199 2.9127 -2.5072 22 1 -8.9668 4.9690 -3.6705 23 1 -7.1915 3.5413 -4.5014 24 6 -4.6916 6.4173 -0.5856 25 6 -3.3712 6.8376 0.0937 26 1 -3.5375 7.0953 1.1397 27 8 -2.7686 7.9292 -0.6044 28 7 1.3253 2.3174 -0.0055 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 4.0254 0.3759 0.0033 33 1 3.8184 4.5284 -0.0163 34 1 -0.6589 3.8191 -0.0140 35 1 -0.7738 6.5020 0.8607 36 1 -0.7732 6.4919 -0.9192 37 1 -2.4103 5.5257 -2.2054 38 1 -2.7572 3.9360 -1.4588 39 1 -7.9641 6.2284 -1.4528 40 1 -5.4141 6.1063 0.1690 41 1 -5.0934 7.2505 -1.1622 42 1 -3.2756 8.7516 -0.5610 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958462609.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:13 Heat of formation + Delta-G solvation = -65.864877 kcal Electronic energy + Delta-G solvation = -27035.353028 eV Core-core repulsion = 23016.154887 eV Total energy + Delta-G solvation = -4019.198141 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.58534 -40.81636 -39.86032 -39.29073 -36.42205 -36.23451 -35.37899 -33.91828 -32.38851 -31.35270 -29.50653 -28.64119 -27.49894 -26.47420 -25.14311 -24.59707 -22.46794 -21.87556 -21.32523 -19.72842 -19.44313 -19.08346 -18.23219 -17.90825 -17.53722 -17.43067 -16.89801 -16.81447 -16.46200 -15.80139 -15.55606 -15.48249 -15.23002 -15.14580 -14.68402 -14.38468 -14.28822 -14.09504 -13.57168 -13.18813 -13.14288 -13.09102 -12.74011 -12.69054 -12.63657 -12.37309 -12.13447 -12.08713 -11.93839 -11.80481 -11.78476 -11.45608 -10.79832 -10.72797 -10.46075 -10.24072 -9.88686 -8.92064 -7.87033 -5.22213 -0.79549 -0.11957 1.45619 1.47110 1.53464 1.55665 1.77436 1.85262 2.47829 2.57174 2.68322 3.10527 3.26679 3.28295 3.35348 3.54411 3.75158 3.89667 3.94234 3.98546 3.99559 4.32189 4.40651 4.41210 4.41741 4.56831 4.62172 4.76320 4.81926 4.87840 4.92945 4.96922 5.21616 5.35047 5.40939 5.52081 5.69611 5.79336 5.89136 6.16678 6.28353 6.50160 6.92253 6.96895 7.08445 7.74763 8.39038 9.23068 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014251 B = 0.003166 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.369513 B = 8842.966711 C =10488.578838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.297 6.297 3 C 0.269 3.731 4 C 0.083 3.917 5 N -0.415 5.415 6 C 0.066 3.934 7 C 0.062 3.938 8 C 0.573 3.427 9 O -0.554 6.554 10 N -0.697 5.697 11 C 0.153 3.847 12 C -0.093 4.093 13 H 0.107 0.893 14 C 0.144 3.856 15 N -0.624 5.624 16 C -0.243 4.243 17 H 0.081 0.919 18 C -0.064 4.064 19 N -0.950 5.950 20 Si 0.978 3.022 21 H -0.283 1.283 22 H -0.296 1.296 23 H -0.272 1.272 24 C 0.159 3.841 25 C 0.097 3.903 26 H 0.089 0.911 27 O -0.570 6.570 28 N -0.482 5.482 29 H 0.128 0.872 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.218 0.782 33 H 0.192 0.808 34 H 0.415 0.585 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.012 0.988 38 H 0.047 0.953 39 H 0.247 0.753 40 H 0.024 0.976 41 H 0.014 0.986 42 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.920 -9.339 6.817 21.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.201 6.201 3 C 0.083 3.917 4 C -0.083 4.083 5 N -0.129 5.129 6 C -0.091 4.091 7 C -0.077 4.077 8 C 0.357 3.643 9 O -0.432 6.432 10 N -0.348 5.348 11 C 0.030 3.970 12 C -0.112 4.112 13 H 0.125 0.875 14 C 0.018 3.982 15 N -0.350 5.350 16 C -0.372 4.372 17 H 0.099 0.901 18 C -0.257 4.257 19 N -0.599 5.599 20 Si 0.806 3.194 21 H -0.210 1.210 22 H -0.222 1.222 23 H -0.197 1.197 24 C 0.034 3.966 25 C 0.037 3.963 26 H 0.107 0.893 27 O -0.378 6.378 28 N -0.215 5.215 29 H 0.146 0.854 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.234 0.766 33 H 0.209 0.791 34 H 0.252 0.748 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.030 0.970 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.042 0.958 41 H 0.033 0.967 42 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 18.592 -9.216 6.625 21.783 hybrid contribution -2.235 -0.016 -0.604 2.315 sum 16.357 -9.232 6.021 19.724 Atomic orbital electron populations 1.23213 0.75324 1.05444 1.02626 1.86299 1.24495 1.22284 1.87037 1.21230 0.91683 0.85348 0.93408 1.23838 0.89552 0.98526 0.96371 1.68732 1.37945 0.97937 1.08263 1.23750 0.90278 0.99287 0.95762 1.21704 0.93610 0.91005 1.01374 1.17815 0.82498 0.87130 0.76870 1.90801 1.71829 1.29169 1.51448 1.45888 1.05438 1.11219 1.72216 1.21019 0.87965 0.85336 1.02698 1.22570 0.93122 0.96738 0.98818 0.87466 1.21672 0.84225 0.97774 0.94488 1.44684 1.03142 1.36827 1.50385 1.19449 0.88436 1.11084 1.18206 0.90096 1.25609 0.98833 0.99723 1.01554 1.70138 1.15037 1.31082 1.43654 0.85092 0.78444 0.77397 0.78470 1.20953 1.22220 1.19671 1.21686 0.93046 0.89820 0.92046 1.22957 0.91618 0.86619 0.95128 0.89311 1.86380 1.51670 1.22238 1.77524 1.67878 1.40654 0.98302 1.14686 0.85386 0.91931 0.92430 0.76597 0.79109 0.74782 0.90291 0.91888 0.97045 0.93428 0.94362 0.95816 0.96750 0.75903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.39 113.37 1.18 1.56 16 2 O -0.30 -4.73 10.49 -89.86 -0.94 -5.68 16 3 C 0.27 4.87 7.50 84.95 0.64 5.51 16 4 C 0.08 1.25 11.18 84.98 0.95 2.20 16 5 N -0.42 -7.76 10.48 -193.73 -2.03 -9.79 16 6 C 0.07 1.37 10.76 84.88 0.91 2.28 16 7 C 0.06 1.43 6.75 41.82 0.28 1.71 16 8 C 0.57 15.58 7.81 86.87 0.68 16.25 16 9 O -0.55 -17.93 16.34 -3.76 -0.06 -17.99 16 10 N -0.70 -18.04 5.49 -465.70 -2.56 -20.60 16 11 C 0.15 4.40 4.60 86.38 0.40 4.80 16 12 C -0.09 -2.94 2.97 -9.40 -0.03 -2.97 16 13 H 0.11 3.06 8.14 -2.38 -0.02 3.04 16 14 C 0.14 5.72 6.64 86.86 0.58 6.30 16 15 N -0.62 -31.32 3.39 -691.99 -2.35 -33.67 16 16 C -0.24 -13.40 10.28 84.03 0.86 -12.53 16 17 H 0.08 4.28 7.83 -2.91 -0.02 4.25 16 18 C -0.06 -3.59 5.49 84.86 0.47 -3.12 16 19 N -0.95 -55.68 10.31 21.65 0.22 -55.46 16 20 Si 0.98 44.96 29.55 68.60 2.03 46.99 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 C 0.16 7.49 5.14 86.73 0.45 7.93 16 25 C 0.10 3.32 4.09 31.79 0.13 3.45 16 26 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 27 O -0.57 -18.76 12.24 -148.98 -1.82 -20.58 16 28 N -0.48 -10.28 8.60 -297.47 -2.56 -12.84 16 29 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 0.86 8.11 -2.39 -0.02 0.84 16 31 H 0.06 0.88 8.11 -2.39 -0.02 0.86 16 32 H 0.22 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.19 3.62 7.64 -2.91 -0.02 3.60 16 34 H 0.42 9.77 7.82 -92.71 -0.73 9.05 16 35 H 0.08 2.17 8.14 -2.39 -0.02 2.16 16 36 H 0.06 2.11 7.55 -2.39 -0.02 2.09 16 37 H 0.01 0.50 7.91 -2.39 -0.02 0.48 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 40 H 0.02 1.23 7.38 -2.39 -0.02 1.22 16 41 H 0.01 0.77 7.43 -2.39 -0.02 0.75 16 42 H 0.39 10.08 9.12 -74.05 -0.68 9.40 16 Total: -1.00 -71.55 357.80 -2.91 -74.46 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: -0.33 Total: 21.77 kcal Atomic # 6 Polarization: 25.89 SS G_CDS: 7.49 Total: 33.38 kcal Atomic # 7 Polarization: -123.09 SS G_CDS: -9.27 Total: -132.36 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -2.83 Total: -44.24 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -71.55 -2.91 -74.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958462609.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.599 kcal (2) G-P(sol) polarization free energy of solvation -71.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds