Wall clock time and date at job start Fri Apr 10 2020 18:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35663 * 116.99989 * 2 1 4 4 C 1.39491 * 120.01124 * 179.97438 * 3 2 1 5 5 N 1.31953 * 120.11285 * 180.02562 * 4 3 2 6 6 C 1.32197 * 120.14300 * 0.02562 * 5 4 3 7 7 C 1.39238 * 120.02336 * 359.97438 * 6 5 4 8 8 C 1.48127 * 120.05600 * 179.97438 * 7 6 5 9 9 O 1.21515 * 120.00022 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99681 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99920 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47240 * 179.97438 * 11 10 8 13 13 H 1.08995 * 110.88318 * 57.42374 * 12 11 10 14 14 C 1.54909 * 110.99995 * 293.54241 * 12 11 10 15 15 N 1.47429 * 104.83047 * 204.91609 * 14 12 11 16 16 C 1.36934 * 125.64813 * 204.09541 * 15 14 12 17 17 H 1.08006 * 120.00023 * 26.01156 * 16 15 14 18 18 C 1.38807 * 119.99844 * 206.01097 * 16 15 14 19 19 N 1.31628 * 119.99850 * 214.47890 * 18 16 15 20 20 Si 1.86795 * 120.00267 * 34.47921 * 18 16 15 21 21 H 1.48505 * 109.46853 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47275 * 119.99928 * 20 18 16 23 23 H 1.48505 * 109.47472 * 240.00188 * 20 18 16 24 24 C 1.47020 * 108.70257 * 24.35582 * 15 14 12 25 25 C 1.54342 * 107.26442 * 358.58958 * 24 15 14 26 26 H 1.08996 * 110.51528 * 96.44615 * 25 24 15 27 27 O 1.42901 * 110.99974 * 219.59788 * 25 24 15 28 28 N 1.32169 * 120.01282 * 0.27011 * 3 2 1 29 29 H 1.08997 * 109.47202 * 60.00914 * 1 2 3 30 30 H 1.09004 * 109.46869 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47158 * 300.00331 * 1 2 3 32 32 H 1.08003 * 119.94482 * 0.04000 * 4 3 2 33 33 H 1.07995 * 119.98999 * 180.02562 * 6 5 4 34 34 H 0.97000 * 120.00403 * 359.97438 * 10 8 7 35 35 H 1.08999 * 109.47004 * 59.99617 * 11 10 8 36 36 H 1.09003 * 109.46777 * 300.00138 * 11 10 8 37 37 H 1.09003 * 110.36563 * 86.08160 * 14 12 11 38 38 H 1.08997 * 110.37335 * 323.75300 * 14 12 11 39 39 H 0.96993 * 119.99885 * 5.09139 * 19 18 16 40 40 H 1.08999 * 109.88065 * 118.12772 * 24 15 14 41 41 H 1.08993 * 109.88474 * 239.29581 * 24 15 14 42 42 H 0.96705 * 113.99937 * 293.77802 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4379 1.2820 0.0005 5 7 4.0390 2.4567 0.0011 6 6 3.3238 3.5685 0.0016 7 6 1.9330 3.5021 0.0010 8 6 1.1308 4.7474 0.0022 9 8 1.6865 5.8280 0.0041 10 7 -0.2154 4.6817 0.0022 11 6 -1.0088 5.9133 0.0039 12 6 -2.4977 5.5608 0.0029 13 1 -2.7497 4.9364 0.8599 14 6 -2.9044 4.8729 -1.3242 15 7 -4.3472 5.1428 -1.4623 16 6 -5.2341 4.3906 -2.1853 17 1 -5.0368 3.3433 -2.3605 18 6 -6.3868 4.9741 -2.6929 19 7 -7.5006 4.2765 -2.7652 20 14 -6.3573 6.7494 -3.2733 21 1 -4.9943 7.3086 -3.0865 22 1 -6.7234 6.8062 -4.7113 23 1 -7.3307 7.5450 -2.4829 24 6 -4.6748 6.3568 -0.7005 25 6 -3.3723 6.8419 -0.0295 26 1 -2.8985 7.6173 -0.6313 27 8 -3.6243 7.3157 1.2950 28 7 1.3253 2.3174 0.0054 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 4.0254 0.3758 0.0003 33 1 3.8183 4.5285 0.0016 34 1 -0.6590 3.8191 0.0011 35 1 -0.7736 6.4982 -0.8853 36 1 -0.7735 6.4958 0.8947 37 1 -2.7231 3.7997 -1.2662 38 1 -2.3557 5.3067 -2.1601 39 1 -7.5362 3.3801 -2.3966 40 1 -5.0559 7.1250 -1.3733 41 1 -5.4189 6.1265 0.0619 42 1 -4.1672 8.1152 1.3301 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958462610.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:16 Heat of formation + Delta-G solvation = -37.257204 kcal Electronic energy + Delta-G solvation = -27044.771159 eV Core-core repulsion = 23026.813539 eV Total energy + Delta-G solvation = -4017.957620 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.81564 -39.82483 -38.79468 -38.39147 -35.49857 -35.00948 -34.50914 -32.46455 -31.60697 -30.29709 -28.05234 -27.85000 -26.42501 -25.14106 -24.11146 -23.06843 -21.29486 -20.64431 -20.17049 -18.86258 -18.67229 -17.60901 -17.23534 -17.20209 -16.79768 -16.71264 -15.95010 -15.59475 -15.27153 -14.92498 -14.81976 -14.30270 -14.09350 -13.79412 -13.41462 -13.35876 -12.96078 -12.85438 -12.49433 -12.44090 -12.16407 -12.04144 -11.96590 -11.44534 -11.33388 -11.08641 -10.99837 -10.78127 -10.69757 -10.39699 -9.90471 -9.68458 -9.49066 -9.34999 -9.29240 -9.09394 -8.43717 -7.10052 -6.48005 -3.35753 -0.01576 0.63890 2.43805 2.46004 2.76277 3.37858 3.39239 3.46613 3.48061 3.59942 3.83523 4.00472 4.35499 4.54931 4.60397 4.69182 4.72049 4.91819 4.93599 4.97914 5.00604 5.03356 5.25919 5.33179 5.39056 5.53048 5.59893 5.61847 5.74546 5.95055 6.06729 6.21102 6.34217 6.44929 6.52880 6.61601 6.62615 6.66620 7.12670 7.35232 7.76337 7.82881 7.90943 8.27845 8.88820 9.48219 10.20649 10.94792 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015250 B = 0.003204 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.682288 B = 8735.703696 C = 9905.464069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.297 6.297 3 C 0.277 3.723 4 C 0.066 3.934 5 N -0.405 5.405 6 C 0.064 3.936 7 C 0.078 3.922 8 C 0.572 3.428 9 O -0.527 6.527 10 N -0.700 5.700 11 C 0.131 3.869 12 C -0.107 4.107 13 H 0.093 0.907 14 C 0.134 3.866 15 N -0.598 5.598 16 C -0.345 4.345 17 H 0.070 0.930 18 C 0.003 3.997 19 N -0.897 5.897 20 Si 1.034 2.966 21 H -0.280 1.280 22 H -0.295 1.295 23 H -0.292 1.292 24 C 0.095 3.905 25 C 0.099 3.901 26 H 0.066 0.934 27 O -0.562 6.562 28 N -0.474 5.474 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.183 0.817 33 H 0.187 0.813 34 H 0.412 0.588 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.026 0.974 39 H 0.268 0.732 40 H 0.034 0.966 41 H 0.046 0.954 42 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.569 -3.520 7.559 20.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.202 6.202 3 C 0.092 3.908 4 C -0.099 4.099 5 N -0.119 5.119 6 C -0.093 4.093 7 C -0.062 4.062 8 C 0.355 3.645 9 O -0.403 6.403 10 N -0.350 5.350 11 C 0.008 3.992 12 C -0.127 4.127 13 H 0.111 0.889 14 C 0.008 3.992 15 N -0.326 5.326 16 C -0.472 4.472 17 H 0.088 0.912 18 C -0.201 4.201 19 N -0.534 5.534 20 Si 0.865 3.135 21 H -0.206 1.206 22 H -0.223 1.223 23 H -0.220 1.220 24 C -0.030 4.030 25 C 0.039 3.961 26 H 0.084 0.916 27 O -0.367 6.367 28 N -0.207 5.207 29 H 0.084 0.916 30 H 0.122 0.878 31 H 0.083 0.917 32 H 0.200 0.800 33 H 0.204 0.796 34 H 0.248 0.752 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.044 0.956 39 H 0.078 0.922 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 18.385 -2.395 6.953 19.801 hybrid contribution -0.105 -1.062 0.404 1.141 sum 18.279 -3.457 7.357 20.005 Atomic orbital electron populations 1.23064 0.76011 1.04009 1.03171 1.86286 1.23808 1.22919 1.87167 1.20981 0.91089 0.85412 0.93308 1.23256 0.89683 0.97898 0.99038 1.68648 1.37975 0.97655 1.07597 1.23652 0.90598 0.98672 0.96416 1.21972 0.93509 0.91452 0.99257 1.17596 0.82452 0.86850 0.77590 1.90818 1.71370 1.27948 1.50125 1.45870 1.05428 1.11271 1.72471 1.21468 0.89258 0.85718 1.02800 1.22608 0.91795 0.97261 1.01019 0.88887 1.21720 0.87402 0.97791 0.92279 1.44531 1.02401 1.29419 1.56240 1.19796 1.01796 0.92266 1.33348 0.91242 1.26058 0.91593 1.05498 0.96969 1.70861 1.24486 1.12831 1.45182 0.84308 0.74989 0.77235 0.77017 1.20637 1.22309 1.21953 1.22305 0.95209 0.90676 0.94836 1.22737 0.95584 0.94602 0.83157 0.91644 1.86475 1.74779 1.48085 1.27382 1.67973 1.40133 0.98149 1.14444 0.91550 0.87780 0.91738 0.79977 0.79614 0.75212 0.90801 0.90552 0.93539 0.95650 0.92155 0.94874 0.93582 0.77547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.39 101.05 1.05 1.31 16 2 O -0.30 -2.74 10.49 -18.69 -0.20 -2.93 16 3 C 0.28 2.78 7.50 -16.94 -0.13 2.65 16 4 C 0.07 0.58 11.18 -17.03 -0.19 0.39 16 5 N -0.41 -4.11 10.48 -12.58 -0.13 -4.24 16 6 C 0.06 0.68 10.76 -17.02 -0.18 0.50 16 7 C 0.08 0.91 6.75 -82.87 -0.56 0.35 16 8 C 0.57 7.61 7.81 -12.20 -0.10 7.52 16 9 O -0.53 -8.13 16.34 5.35 0.09 -8.05 16 10 N -0.70 -8.99 5.40 -61.16 -0.33 -9.32 16 11 C 0.13 1.79 5.12 -4.04 -0.02 1.77 16 12 C -0.11 -1.68 2.83 -88.47 -0.25 -1.93 16 13 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 14 C 0.13 2.53 6.41 -2.53 -0.02 2.52 16 15 N -0.60 -14.09 3.06 -170.06 -0.52 -14.62 16 16 C -0.35 -9.54 10.24 -15.06 -0.15 -9.70 16 17 H 0.07 2.03 8.06 -52.48 -0.42 1.61 16 18 C 0.00 0.09 5.29 -17.43 -0.09 -0.01 16 19 N -0.90 -27.01 13.70 55.49 0.76 -26.25 16 20 Si 1.03 25.25 26.22 -169.99 -4.46 20.79 16 21 H -0.28 -6.40 6.16 56.52 0.35 -6.05 16 22 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 C 0.10 1.99 5.82 -3.06 -0.02 1.97 16 25 C 0.10 1.62 3.78 -24.89 -0.09 1.53 16 26 H 0.07 0.98 8.04 -51.93 -0.42 0.56 16 27 O -0.56 -8.27 13.40 -35.23 -0.47 -8.74 16 28 N -0.47 -5.32 8.60 -9.69 -0.08 -5.41 16 29 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 30 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 32 H 0.18 1.01 8.06 -52.48 -0.42 0.59 16 33 H 0.19 1.74 7.64 -52.49 -0.40 1.34 16 34 H 0.41 5.00 7.69 -40.82 -0.31 4.69 16 35 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.03 0.49 8.00 -51.93 -0.42 0.07 16 39 H 0.27 7.99 8.73 -40.82 -0.36 7.63 16 40 H 0.03 0.72 3.83 -51.93 -0.20 0.52 16 41 H 0.05 1.02 8.06 -51.93 -0.42 0.60 16 42 H 0.38 3.94 9.12 45.56 0.42 4.36 16 LS Contribution 356.07 15.07 5.37 5.37 Total: -1.00 -33.39 356.07 -5.48 -38.87 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -4.75 Total: 5.66 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -0.75 Total: 8.86 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: -0.31 Total: -59.83 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.58 Total: -19.72 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -4.46 Total: 20.79 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.39 -5.48 -38.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958462610.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.615 kcal (2) G-P(sol) polarization free energy of solvation -33.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds