Wall clock time and date at job start Fri Apr 10 2020 18:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35667 * 116.99783 * 2 1 4 4 C 1.39489 * 120.01293 * 179.97438 * 3 2 1 5 5 N 1.31955 * 120.11379 * 180.02562 * 4 3 2 6 6 C 1.32188 * 120.14193 * 0.02562 * 5 4 3 7 7 C 1.39241 * 120.02351 * 0.02562 * 6 5 4 8 8 C 1.48129 * 120.05352 * 180.02562 * 7 6 5 9 9 O 1.21522 * 119.99971 * 359.95819 * 8 7 6 10 10 N 1.34777 * 119.99770 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99628 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47009 * 180.02562 * 11 10 8 13 13 H 1.09000 * 110.88271 * 305.70035 * 12 11 10 14 14 C 1.54903 * 111.00676 * 69.57834 * 12 11 10 15 15 N 1.47425 * 104.83331 * 155.08569 * 14 12 11 16 16 C 1.36939 * 125.65011 * 155.90775 * 15 14 12 17 17 H 1.08000 * 119.99927 * 0.02562 * 16 15 14 18 18 C 1.38811 * 120.00070 * 179.97438 * 16 15 14 19 19 N 1.31623 * 120.00087 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99994 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46840 * 60.00269 * 20 18 16 22 22 H 1.48492 * 109.47117 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47192 * 300.00599 * 20 18 16 24 24 C 1.47021 * 108.70262 * 335.87389 * 15 14 12 25 25 C 1.54371 * 107.28739 * 1.09042 * 24 15 14 26 26 H 1.09003 * 110.70561 * 263.79500 * 25 24 15 27 27 O 1.42899 * 110.75239 * 140.51011 * 25 24 15 28 28 N 1.32164 * 120.01287 * 0.02562 * 3 2 1 29 29 H 1.09008 * 109.47316 * 60.00098 * 1 2 3 30 30 H 1.09006 * 109.46881 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47322 * 299.99601 * 1 2 3 32 32 H 1.08001 * 119.94088 * 0.02562 * 4 3 2 33 33 H 1.07999 * 119.98590 * 180.02562 * 6 5 4 34 34 H 0.96989 * 120.00266 * 359.97438 * 10 8 7 35 35 H 1.09007 * 109.47456 * 299.99498 * 11 10 8 36 36 H 1.08997 * 109.47394 * 59.99958 * 11 10 8 37 37 H 1.08999 * 110.36933 * 273.92622 * 14 12 11 38 38 H 1.09002 * 110.37115 * 36.24899 * 14 12 11 39 39 H 0.96996 * 120.00098 * 179.97438 * 19 18 16 40 40 H 1.08996 * 109.88559 * 120.48036 * 24 15 14 41 41 H 1.08998 * 109.88102 * 241.48408 * 24 15 14 42 42 H 0.96695 * 114.00110 * 66.48164 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4379 1.2822 0.0005 5 7 4.0389 2.4569 0.0011 6 6 3.3237 3.5685 0.0016 7 6 1.9328 3.5021 0.0021 8 6 1.1306 4.7473 0.0021 9 8 1.6863 5.8281 0.0024 10 7 -0.2155 4.6817 0.0021 11 6 -1.0089 5.9133 0.0015 12 6 -2.4977 5.5608 0.0023 13 1 -2.7392 4.8925 -0.8242 14 6 -2.9214 4.9428 1.3581 15 7 -4.3657 5.2190 1.4639 16 6 -5.2619 4.5052 2.2139 17 1 -4.9267 3.6586 2.7947 18 6 -6.6011 4.8702 2.2283 19 7 -7.0096 5.9022 1.5208 20 14 -7.8238 3.8960 3.2508 21 1 -7.4233 3.9444 4.6800 22 1 -9.1781 4.4850 3.0967 23 1 -7.8415 2.4847 2.7893 24 6 -4.6843 6.3882 0.6314 25 6 -3.3724 6.8415 -0.0443 26 1 -2.9060 7.6479 0.5217 27 8 -3.6108 7.2421 -1.3951 28 7 1.3253 2.3174 0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 4.0254 0.3760 0.0005 33 1 3.8182 4.5286 0.0016 34 1 -0.6590 3.8191 0.0017 35 1 -0.7738 6.4974 0.8914 36 1 -0.7737 6.4966 -0.8886 37 1 -2.7396 3.8681 1.3585 38 1 -2.3831 5.4197 2.1772 39 1 -7.9454 6.1571 1.5306 40 1 -5.4164 6.1141 -0.1281 41 1 -5.0798 7.1902 1.2547 42 1 -4.1532 8.0382 -1.4793 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958462611.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:18 Heat of formation + Delta-G solvation = -38.945779 kcal Electronic energy + Delta-G solvation = -26962.341596 eV Core-core repulsion = 22944.310754 eV Total energy + Delta-G solvation = -4018.030842 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.78363 -39.74286 -38.69241 -38.17876 -35.28742 -34.88085 -34.44541 -32.26647 -31.54385 -29.79470 -28.00220 -27.64218 -26.17479 -25.15432 -24.13566 -23.34480 -21.24939 -20.32792 -20.09032 -18.78994 -18.62894 -17.18889 -17.08662 -16.97469 -16.68529 -16.49624 -15.83154 -15.52144 -15.05688 -14.86179 -14.47516 -14.24769 -14.01388 -13.72813 -13.37600 -13.21980 -12.69929 -12.49484 -12.46640 -12.09757 -12.01561 -11.94162 -11.53426 -11.32062 -11.27524 -11.03340 -10.84584 -10.71120 -10.66649 -10.12076 -9.93553 -9.86422 -9.61645 -9.26985 -9.23264 -9.02999 -8.70119 -6.95206 -5.80180 -3.14942 0.01879 0.66814 2.48385 2.48836 2.83091 3.34927 3.39245 3.40674 3.41661 3.51803 3.86954 4.03592 4.39363 4.62222 4.70792 4.75492 4.94032 4.95668 5.00857 5.02665 5.14147 5.35055 5.38144 5.44841 5.61300 5.64221 5.79409 5.92753 5.97894 6.14663 6.25255 6.33194 6.46738 6.56007 6.64857 6.75910 7.16667 7.34385 7.41522 7.44307 7.69815 7.97547 8.14129 8.15347 9.11129 9.71676 10.35768 11.31301 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013759 B = 0.003167 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.577524 B = 8838.980030 C =10399.938633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.298 6.298 3 C 0.277 3.723 4 C 0.066 3.934 5 N -0.405 5.405 6 C 0.064 3.936 7 C 0.079 3.921 8 C 0.571 3.429 9 O -0.527 6.527 10 N -0.699 5.699 11 C 0.130 3.870 12 C -0.108 4.108 13 H 0.090 0.910 14 C 0.142 3.858 15 N -0.602 5.602 16 C -0.232 4.232 17 H 0.079 0.921 18 C -0.007 4.007 19 N -0.922 5.922 20 Si 0.914 3.086 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.151 3.849 25 C 0.083 3.917 26 H 0.058 0.942 27 O -0.566 6.566 28 N -0.474 5.474 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.183 0.817 33 H 0.187 0.813 34 H 0.411 0.589 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.042 0.958 38 H 0.023 0.977 39 H 0.254 0.746 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.008 -6.957 -4.733 18.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.202 6.202 3 C 0.092 3.908 4 C -0.100 4.100 5 N -0.119 5.119 6 C -0.094 4.094 7 C -0.061 4.061 8 C 0.354 3.646 9 O -0.403 6.403 10 N -0.349 5.349 11 C 0.007 3.993 12 C -0.128 4.128 13 H 0.108 0.892 14 C 0.015 3.985 15 N -0.329 5.329 16 C -0.360 4.360 17 H 0.097 0.903 18 C -0.203 4.203 19 N -0.569 5.569 20 Si 0.744 3.256 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.211 1.211 24 C 0.026 3.974 25 C 0.023 3.977 26 H 0.075 0.925 27 O -0.371 6.371 28 N -0.207 5.207 29 H 0.083 0.917 30 H 0.122 0.878 31 H 0.085 0.915 32 H 0.200 0.800 33 H 0.204 0.796 34 H 0.247 0.753 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.041 0.959 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 17.565 -6.912 -4.807 19.478 hybrid contribution -1.704 -0.394 0.703 1.885 sum 15.861 -7.306 -4.104 17.939 Atomic orbital electron populations 1.23065 0.76031 1.03967 1.03205 1.86285 1.23803 1.22942 1.87199 1.20976 0.91080 0.85419 0.93345 1.23246 0.89688 0.97886 0.99145 1.68642 1.37992 0.97661 1.07601 1.23653 0.90624 0.98658 0.96440 1.22000 0.93521 0.91484 0.99107 1.17602 0.82520 0.86808 0.77691 1.90818 1.71381 1.27937 1.50200 1.45904 1.05383 1.11355 1.72282 1.21508 0.89550 0.85555 1.02668 1.22610 0.91512 0.98124 1.00537 0.89172 1.21610 0.86903 0.97607 0.92354 1.44294 1.01738 1.32794 1.54089 1.19012 0.87911 1.08647 1.20455 0.90333 1.24816 0.97042 0.98329 1.00108 1.69927 1.15275 1.27856 1.43880 0.86169 0.80455 0.79171 0.79774 1.21109 1.21535 1.21099 1.21840 0.91236 0.90183 0.94125 1.23115 0.97404 0.94499 0.82649 0.92452 1.86418 1.74821 1.49350 1.26546 1.67971 1.40121 0.98142 1.14430 0.91708 0.87821 0.91540 0.80020 0.79619 0.75286 0.90871 0.90683 0.93956 0.95906 0.93589 0.92408 0.93562 0.77655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.39 101.05 1.05 1.30 16 2 O -0.30 -2.73 10.49 -18.70 -0.20 -2.93 16 3 C 0.28 2.79 7.50 -16.94 -0.13 2.66 16 4 C 0.07 0.58 11.18 -17.03 -0.19 0.39 16 5 N -0.41 -4.16 10.48 -12.58 -0.13 -4.29 16 6 C 0.06 0.69 10.76 -17.03 -0.18 0.51 16 7 C 0.08 0.94 6.75 -82.87 -0.56 0.38 16 8 C 0.57 7.80 7.81 -12.20 -0.10 7.70 16 9 O -0.53 -8.37 16.34 5.35 0.09 -8.28 16 10 N -0.70 -9.29 5.44 -61.16 -0.33 -9.63 16 11 C 0.13 1.89 5.12 -4.04 -0.02 1.86 16 12 C -0.11 -1.81 2.79 -88.48 -0.25 -2.06 16 13 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 14 C 0.14 2.74 6.56 -2.53 -0.02 2.73 16 15 N -0.60 -14.80 3.39 -170.05 -0.58 -15.37 16 16 C -0.23 -6.28 10.28 -15.06 -0.15 -6.43 16 17 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 18 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 19 N -0.92 -26.36 10.31 55.49 0.57 -25.79 16 20 Si 0.91 21.56 29.55 -169.99 -5.02 16.54 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 24 C 0.15 3.52 5.16 -3.04 -0.02 3.51 16 25 C 0.08 1.51 3.80 -24.87 -0.09 1.41 16 26 H 0.06 0.96 8.04 -51.93 -0.42 0.54 16 27 O -0.57 -9.54 13.39 -35.23 -0.47 -10.01 16 28 N -0.47 -5.37 8.60 -9.69 -0.08 -5.45 16 29 H 0.06 0.52 8.11 -51.92 -0.42 0.09 16 30 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 32 H 0.18 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.19 1.78 7.64 -52.49 -0.40 1.38 16 34 H 0.41 5.13 7.78 -40.82 -0.32 4.81 16 35 H 0.07 1.08 8.03 -51.92 -0.42 0.66 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.02 0.45 7.96 -51.93 -0.41 0.03 16 39 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.06 1.52 7.30 -51.93 -0.38 1.14 16 41 H 0.05 1.18 7.50 -51.93 -0.39 0.79 16 42 H 0.38 4.89 9.12 45.56 0.42 5.30 16 LS Contribution 359.25 15.07 5.41 5.41 Total: -1.00 -32.52 359.25 -6.31 -38.83 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -4.82 Total: 7.28 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: -0.75 Total: 13.68 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: -0.55 Total: -60.53 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.58 Total: -21.22 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.52 -6.31 -38.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958462611.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.113 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds