Wall clock time and date at job start Fri Apr 10 2020 18:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35667 * 116.99783 * 2 1 4 4 C 1.39489 * 120.01293 * 179.97438 * 3 2 1 5 5 N 1.31955 * 120.11379 * 180.02562 * 4 3 2 6 6 C 1.32188 * 120.14193 * 0.02562 * 5 4 3 7 7 C 1.39241 * 120.02351 * 0.02562 * 6 5 4 8 8 C 1.48129 * 120.05352 * 180.02562 * 7 6 5 9 9 O 1.21522 * 119.99971 * 359.95819 * 8 7 6 10 10 N 1.34777 * 119.99770 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99628 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47009 * 180.02562 * 11 10 8 13 13 H 1.09000 * 110.88271 * 305.70035 * 12 11 10 14 14 C 1.54903 * 111.00676 * 69.57834 * 12 11 10 15 15 N 1.47425 * 104.83331 * 155.08569 * 14 12 11 16 16 C 1.36939 * 125.65011 * 155.90775 * 15 14 12 17 17 H 1.08000 * 119.99927 * 0.02562 * 16 15 14 18 18 C 1.38811 * 120.00070 * 179.97438 * 16 15 14 19 19 N 1.31623 * 120.00087 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99994 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46840 * 60.00269 * 20 18 16 22 22 H 1.48492 * 109.47117 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47192 * 300.00599 * 20 18 16 24 24 C 1.47021 * 108.70262 * 335.87389 * 15 14 12 25 25 C 1.54371 * 107.28739 * 1.09042 * 24 15 14 26 26 H 1.09003 * 110.70561 * 263.79500 * 25 24 15 27 27 O 1.42899 * 110.75239 * 140.51011 * 25 24 15 28 28 N 1.32164 * 120.01287 * 0.02562 * 3 2 1 29 29 H 1.09008 * 109.47316 * 60.00098 * 1 2 3 30 30 H 1.09006 * 109.46881 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47322 * 299.99601 * 1 2 3 32 32 H 1.08001 * 119.94088 * 0.02562 * 4 3 2 33 33 H 1.07999 * 119.98590 * 180.02562 * 6 5 4 34 34 H 0.96989 * 120.00266 * 359.97438 * 10 8 7 35 35 H 1.09007 * 109.47456 * 299.99498 * 11 10 8 36 36 H 1.08997 * 109.47394 * 59.99958 * 11 10 8 37 37 H 1.08999 * 110.36933 * 273.92622 * 14 12 11 38 38 H 1.09002 * 110.37115 * 36.24899 * 14 12 11 39 39 H 0.96996 * 120.00098 * 179.97438 * 19 18 16 40 40 H 1.08996 * 109.88559 * 120.48036 * 24 15 14 41 41 H 1.08998 * 109.88102 * 241.48408 * 24 15 14 42 42 H 0.96695 * 114.00110 * 66.48164 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4379 1.2822 0.0005 5 7 4.0389 2.4569 0.0011 6 6 3.3237 3.5685 0.0016 7 6 1.9328 3.5021 0.0021 8 6 1.1306 4.7473 0.0021 9 8 1.6863 5.8281 0.0024 10 7 -0.2155 4.6817 0.0021 11 6 -1.0089 5.9133 0.0015 12 6 -2.4977 5.5608 0.0023 13 1 -2.7392 4.8925 -0.8242 14 6 -2.9214 4.9428 1.3581 15 7 -4.3657 5.2190 1.4639 16 6 -5.2619 4.5052 2.2139 17 1 -4.9267 3.6586 2.7947 18 6 -6.6011 4.8702 2.2283 19 7 -7.0096 5.9022 1.5208 20 14 -7.8238 3.8960 3.2508 21 1 -7.4233 3.9444 4.6800 22 1 -9.1781 4.4850 3.0967 23 1 -7.8415 2.4847 2.7893 24 6 -4.6843 6.3882 0.6314 25 6 -3.3724 6.8415 -0.0443 26 1 -2.9060 7.6479 0.5217 27 8 -3.6108 7.2421 -1.3951 28 7 1.3253 2.3174 0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 4.0254 0.3760 0.0005 33 1 3.8182 4.5286 0.0016 34 1 -0.6590 3.8191 0.0017 35 1 -0.7738 6.4974 0.8914 36 1 -0.7737 6.4966 -0.8886 37 1 -2.7396 3.8681 1.3585 38 1 -2.3831 5.4197 2.1772 39 1 -7.9454 6.1571 1.5306 40 1 -5.4164 6.1141 -0.1281 41 1 -5.0798 7.1902 1.2547 42 1 -4.1532 8.0382 -1.4793 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958462611.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:18 Heat of formation + Delta-G solvation = -67.305321 kcal Electronic energy + Delta-G solvation = -26963.571358 eV Core-core repulsion = 22944.310754 eV Total energy + Delta-G solvation = -4019.260604 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.58810 -40.82424 -39.82672 -39.29022 -36.66404 -36.24888 -35.39563 -33.99343 -32.39429 -31.38754 -29.37480 -28.64315 -27.51026 -26.46406 -25.12900 -24.59114 -22.50507 -21.88550 -21.47765 -19.77408 -19.44122 -18.86318 -18.28874 -17.90699 -17.65273 -17.44733 -17.10288 -16.79545 -16.50544 -15.89998 -15.74017 -15.53340 -15.18698 -14.97481 -14.61254 -14.41152 -14.10259 -14.01676 -13.70469 -13.24226 -13.17164 -13.11023 -12.74327 -12.69657 -12.63832 -12.47581 -12.35577 -12.09265 -11.95190 -11.81410 -11.79241 -11.41707 -10.85244 -10.73061 -10.46037 -10.26835 -9.89130 -8.94700 -7.87110 -5.23766 -0.79822 -0.11961 1.46045 1.48842 1.52526 1.55109 1.76954 1.82894 2.47326 2.56957 2.67229 3.09928 3.23079 3.28183 3.33500 3.54820 3.64000 3.82300 3.87584 3.99004 4.13206 4.32034 4.39294 4.40055 4.40737 4.43814 4.58981 4.71218 4.75922 4.84867 4.92615 4.92800 5.17137 5.31196 5.40786 5.47978 5.70529 5.79167 5.88892 6.15568 6.26643 6.49499 6.88808 6.92702 7.06247 7.72973 8.36231 9.22673 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013759 B = 0.003167 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.577524 B = 8838.980030 C =10399.938633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.297 6.297 3 C 0.269 3.731 4 C 0.083 3.917 5 N -0.415 5.415 6 C 0.067 3.933 7 C 0.061 3.939 8 C 0.575 3.425 9 O -0.553 6.553 10 N -0.696 5.696 11 C 0.144 3.856 12 C -0.090 4.090 13 H 0.085 0.915 14 C 0.140 3.860 15 N -0.624 5.624 16 C -0.245 4.245 17 H 0.086 0.914 18 C -0.065 4.065 19 N -0.951 5.951 20 Si 0.979 3.021 21 H -0.277 1.277 22 H -0.296 1.296 23 H -0.275 1.275 24 C 0.160 3.840 25 C 0.098 3.902 26 H 0.079 0.921 27 O -0.569 6.569 28 N -0.483 5.483 29 H 0.060 0.940 30 H 0.128 0.872 31 H 0.058 0.942 32 H 0.217 0.783 33 H 0.193 0.807 34 H 0.415 0.585 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.030 0.970 39 H 0.247 0.753 40 H 0.019 0.981 41 H 0.014 0.986 42 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.693 -8.496 -4.669 21.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.201 6.201 3 C 0.083 3.917 4 C -0.083 4.083 5 N -0.129 5.129 6 C -0.090 4.090 7 C -0.077 4.077 8 C 0.359 3.641 9 O -0.431 6.431 10 N -0.347 5.347 11 C 0.020 3.980 12 C -0.110 4.110 13 H 0.103 0.897 14 C 0.015 3.985 15 N -0.352 5.352 16 C -0.374 4.374 17 H 0.104 0.896 18 C -0.258 4.258 19 N -0.599 5.599 20 Si 0.807 3.193 21 H -0.203 1.203 22 H -0.222 1.222 23 H -0.201 1.201 24 C 0.034 3.966 25 C 0.038 3.962 26 H 0.096 0.904 27 O -0.376 6.376 28 N -0.216 5.216 29 H 0.079 0.921 30 H 0.146 0.854 31 H 0.077 0.923 32 H 0.234 0.766 33 H 0.210 0.790 34 H 0.252 0.748 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.037 0.963 41 H 0.032 0.968 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 19.274 -8.449 -4.748 21.574 hybrid contribution -2.188 -0.007 0.670 2.288 sum 17.086 -8.456 -4.079 19.496 Atomic orbital electron populations 1.23208 0.75349 1.05433 1.02597 1.86297 1.24455 1.22328 1.87042 1.21230 0.91692 0.85337 0.93445 1.23833 0.89522 0.98545 0.96361 1.68735 1.37938 0.97939 1.08266 1.23764 0.90241 0.99306 0.95685 1.21705 0.93627 0.90999 1.01418 1.17788 0.82387 0.87155 0.76804 1.90799 1.71788 1.29047 1.51447 1.45817 1.05423 1.11133 1.72285 1.21275 0.87773 0.86004 1.02942 1.22404 0.92874 0.97018 0.98702 0.89698 1.21763 0.84214 0.98577 0.93932 1.44596 1.03696 1.32984 1.53890 1.19442 0.88700 1.08849 1.20370 0.89616 1.25660 0.98912 0.99567 1.01667 1.70151 1.14966 1.29406 1.45425 0.85149 0.77662 0.78012 0.78487 1.20295 1.22208 1.20131 1.21616 0.93239 0.88995 0.92719 1.22876 0.94711 0.95612 0.83012 0.90369 1.86388 1.75168 1.50593 1.25501 1.67875 1.40705 0.98352 1.14665 0.92109 0.85396 0.92321 0.76620 0.78998 0.74772 0.90671 0.90350 0.92901 0.95187 0.94369 0.96258 0.96784 0.75679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.39 113.37 1.18 1.58 16 2 O -0.30 -4.79 10.49 -89.83 -0.94 -5.73 16 3 C 0.27 4.87 7.50 84.94 0.64 5.51 16 4 C 0.08 1.25 11.18 84.98 0.95 2.20 16 5 N -0.42 -7.64 10.48 -193.72 -2.03 -9.67 16 6 C 0.07 1.35 10.76 84.88 0.91 2.27 16 7 C 0.06 1.39 6.75 41.82 0.28 1.67 16 8 C 0.57 15.11 7.81 86.87 0.68 15.79 16 9 O -0.55 -17.06 16.34 -3.78 -0.06 -17.12 16 10 N -0.70 -17.61 5.44 -465.69 -2.53 -20.15 16 11 C 0.14 3.92 5.12 86.38 0.44 4.36 16 12 C -0.09 -2.92 2.79 -9.40 -0.03 -2.95 16 13 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 14 C 0.14 5.31 6.56 86.85 0.57 5.88 16 15 N -0.62 -30.98 3.39 -691.91 -2.35 -33.33 16 16 C -0.24 -13.34 10.28 84.03 0.86 -12.47 16 17 H 0.09 4.41 7.83 -2.91 -0.02 4.38 16 18 C -0.06 -3.62 5.49 84.86 0.47 -3.15 16 19 N -0.95 -56.06 10.31 21.65 0.22 -55.84 16 20 Si 0.98 44.71 29.55 68.60 2.03 46.73 16 21 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 22 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 23 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 24 C 0.16 7.63 5.16 86.75 0.45 8.08 16 25 C 0.10 3.48 3.80 31.80 0.12 3.60 16 26 H 0.08 2.49 8.04 -2.39 -0.02 2.47 16 27 O -0.57 -18.56 13.39 -148.98 -1.99 -20.56 16 28 N -0.48 -10.27 8.60 -297.49 -2.56 -12.83 16 29 H 0.06 0.89 8.11 -2.38 -0.02 0.87 16 30 H 0.13 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.06 0.90 8.11 -2.39 -0.02 0.88 16 32 H 0.22 1.60 8.06 -2.91 -0.02 1.58 16 33 H 0.19 3.50 7.64 -2.91 -0.02 3.48 16 34 H 0.42 9.84 7.78 -92.72 -0.72 9.12 16 35 H 0.08 2.07 8.03 -2.38 -0.02 2.05 16 36 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.03 1.12 7.96 -2.39 -0.02 1.11 16 39 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 40 H 0.02 1.05 7.30 -2.39 -0.02 1.04 16 41 H 0.01 0.74 7.50 -2.39 -0.02 0.73 16 42 H 0.39 9.84 9.12 -74.06 -0.68 9.17 16 Total: -1.00 -70.65 359.25 -3.02 -73.67 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -0.32 Total: 22.47 kcal Atomic # 6 Polarization: 24.83 SS G_CDS: 7.52 Total: 32.35 kcal Atomic # 7 Polarization: -122.56 SS G_CDS: -9.25 Total: -131.81 kcal Atomic # 8 Polarization: -40.41 SS G_CDS: -3.00 Total: -43.41 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -70.65 -3.02 -73.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958462611.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.369 kcal (2) G-P(sol) polarization free energy of solvation -70.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds