Wall clock time and date at job start Fri Apr 10 2020 18:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47247 * 2 1 4 4 N 1.46503 * 109.47122 * 119.99718 * 2 1 3 5 5 C 1.34778 * 119.99896 * 275.00265 * 4 2 1 6 6 O 1.21593 * 119.99956 * 359.97438 * 5 4 2 7 7 C 1.47525 * 119.99831 * 179.97438 * 5 4 2 8 8 C 1.36601 * 125.76849 * 179.97438 * 7 5 4 9 9 N 1.34811 * 106.83811 * 179.97438 * 8 7 5 10 10 C 1.46495 * 126.59602 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47546 * 124.97404 * 10 9 8 12 12 N 1.34777 * 120.00075 * 179.97438 * 11 10 9 13 13 O 1.21284 * 119.99801 * 0.02562 * 11 10 9 14 14 N 1.40215 * 106.81108 * 0.02562 * 9 8 7 15 15 N 1.28756 * 108.36742 * 359.97438 * 14 9 8 16 16 C 1.52999 * 109.47270 * 239.99592 * 2 1 3 17 17 C 1.53949 * 113.74307 * 158.74173 * 16 2 1 18 18 N 1.47808 * 86.03486 * 222.08363 * 17 16 2 19 19 C 1.36936 * 134.45503 * 204.63753 * 18 17 16 20 20 H 1.08005 * 120.00172 * 179.86947 * 19 18 17 21 21 C 1.38815 * 119.99999 * 359.87915 * 19 18 17 22 22 N 1.31623 * 120.00075 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00099 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47044 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47495 * 119.99264 * 23 21 19 26 26 H 1.48498 * 109.46938 * 239.99421 * 23 21 19 27 27 C 1.47584 * 91.05312 * 24.55076 * 18 17 16 28 28 H 1.09004 * 109.47667 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47170 * 300.00201 * 1 2 3 30 30 H 1.09004 * 109.47335 * 60.00677 * 1 2 3 31 31 H 0.96997 * 120.00053 * 94.99808 * 4 2 1 32 32 H 1.07993 * 126.58084 * 359.96218 * 8 7 5 33 33 H 1.09002 * 109.47096 * 244.97589 * 10 9 8 34 34 H 1.08998 * 109.46976 * 4.96932 * 10 9 8 35 35 H 0.97005 * 120.00299 * 0.02562 * 12 11 10 36 36 H 0.97002 * 120.00041 * 180.02562 * 12 11 10 37 37 H 1.09002 * 112.94527 * 290.33458 * 16 2 1 38 38 H 1.08996 * 113.76698 * 336.35433 * 17 16 2 39 39 H 1.09003 * 113.76493 * 107.74569 * 17 16 2 40 40 H 0.96998 * 119.99986 * 180.02562 * 22 21 19 41 41 H 1.09002 * 113.76400 * 221.15329 * 27 18 17 42 42 H 1.08995 * 113.87123 * 89.76497 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1469 -0.0181 2.3572 6 8 1.8581 1.1617 2.4116 7 6 2.6382 -0.7137 3.5619 8 6 2.8136 -0.1498 4.7936 9 7 3.2733 -1.1222 5.6064 10 6 3.6071 -0.9883 7.0265 11 6 2.8359 -2.0095 7.8223 12 7 2.9847 -2.0736 9.1603 13 8 2.0820 -2.7743 7.2586 14 7 3.3706 -2.2864 4.8310 15 7 2.9885 -2.0092 3.6331 16 6 2.0400 -0.7213 -1.2492 17 6 3.4848 -0.3522 -1.6316 18 7 2.9978 -0.3179 -3.0268 19 6 3.5875 -0.4759 -4.2525 20 1 2.9928 -0.4041 -5.1512 21 6 4.9496 -0.7287 -4.3400 22 7 5.6745 -0.8160 -3.2449 23 14 5.7542 -0.9436 -6.0122 24 1 4.7291 -0.7997 -7.0769 25 1 6.8044 0.0905 -6.1928 26 1 6.3685 -2.2929 -6.0961 27 6 1.6213 -0.0473 -2.5684 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8901 31 1 2.2489 -1.6317 1.1527 32 1 2.6211 0.8778 5.0644 33 1 4.6759 -1.1510 7.1654 34 1 3.3446 0.0128 7.3686 35 1 3.5880 -1.4622 9.6111 36 1 2.4886 -2.7312 9.6725 37 1 1.8528 -1.7949 -1.2261 38 1 3.8047 0.6189 -1.2539 39 1 4.2070 -1.1449 -1.4365 40 1 6.6264 -0.9923 -3.3060 41 1 0.8586 -0.5971 -3.1199 42 1 1.3909 1.0131 -2.4662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970927316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:44 Heat of formation + Delta-G solvation = 85.012278 kcal Electronic energy + Delta-G solvation = -26361.531807 eV Core-core repulsion = 22381.168941 eV Total energy + Delta-G solvation = -3980.362866 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.36738 -40.01930 -39.41682 -37.88623 -34.93321 -34.65750 -34.33556 -32.14487 -31.26467 -30.23498 -28.75149 -27.43483 -24.93570 -24.13651 -23.40119 -23.09044 -21.51365 -21.09177 -20.16916 -19.26917 -18.40082 -17.82882 -17.30925 -16.67860 -16.42673 -16.04364 -15.91511 -15.52729 -14.84315 -14.75139 -14.64949 -14.24846 -14.09220 -13.76603 -13.43855 -13.25549 -12.93412 -12.36543 -12.22399 -12.03033 -11.56886 -11.43229 -11.25149 -11.20553 -11.09357 -10.85591 -10.66115 -10.41216 -10.37107 -10.26486 -10.02610 -9.73445 -9.65915 -9.39118 -9.32528 -8.72770 -8.68640 -6.79111 -5.68954 -3.01017 0.94516 1.60536 1.74701 1.87405 2.72065 3.33037 3.43725 3.43988 3.48834 3.51666 3.88230 4.03560 4.14108 4.27140 4.51735 4.61143 4.84677 5.08648 5.18921 5.36674 5.39208 5.60874 5.67301 5.76058 5.90801 5.96239 6.06073 6.10764 6.12995 6.33216 6.44878 6.50235 6.55517 6.67501 6.75227 6.89770 7.33378 7.46423 7.52180 7.65753 7.66938 7.93806 8.06168 8.39277 9.12337 9.78576 10.68635 11.48129 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021108 B = 0.002359 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.216522 B =11865.922425 C =12696.460933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.151 3.849 3 H 0.089 0.911 4 N -0.699 5.699 5 C 0.604 3.396 6 O -0.545 6.545 7 C -0.092 4.092 8 C 0.091 3.909 9 N -0.361 5.361 10 C 0.104 3.896 11 C 0.504 3.496 12 N -0.850 5.850 13 O -0.507 6.507 14 N -0.035 5.035 15 N -0.201 5.201 16 C -0.147 4.147 17 C 0.171 3.829 18 N -0.613 5.613 19 C -0.221 4.221 20 H 0.080 0.920 21 C -0.010 4.010 22 N -0.920 5.920 23 Si 0.911 3.089 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.131 3.869 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.408 0.592 32 H 0.206 0.794 33 H 0.130 0.870 34 H 0.136 0.864 35 H 0.404 0.596 36 H 0.409 0.591 37 H 0.089 0.911 38 H 0.026 0.974 39 H 0.072 0.928 40 H 0.252 0.748 41 H 0.044 0.956 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.607 1.721 28.208 28.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 H 0.107 0.893 4 N -0.349 5.349 5 C 0.388 3.612 6 O -0.423 6.423 7 C -0.230 4.230 8 C -0.064 4.064 9 N -0.146 5.146 10 C -0.022 4.022 11 C 0.285 3.715 12 N -0.417 5.417 13 O -0.380 6.380 14 N -0.015 5.015 15 N -0.076 5.076 16 C -0.167 4.167 17 C 0.045 3.955 18 N -0.339 5.339 19 C -0.348 4.348 20 H 0.098 0.902 21 C -0.206 4.206 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.004 3.996 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.244 0.756 32 H 0.222 0.778 33 H 0.148 0.852 34 H 0.153 0.847 35 H 0.232 0.768 36 H 0.241 0.759 37 H 0.108 0.892 38 H 0.044 0.956 39 H 0.090 0.910 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.622 0.615 27.441 28.018 hybrid contribution 0.633 0.648 -0.113 0.913 sum -4.989 1.263 27.328 27.808 Atomic orbital electron populations 1.22139 0.95570 1.01912 1.02074 1.21150 0.93551 0.97551 0.83102 0.89269 1.45902 1.65358 1.14631 1.08961 1.16718 0.77353 0.85544 0.81611 1.90785 1.51833 1.14826 1.84824 1.21552 1.13918 0.91421 0.96151 1.23303 0.96594 0.96413 0.90136 1.49826 1.46168 1.09201 1.09445 1.21694 1.02556 1.01600 0.76301 1.20370 0.82846 0.85054 0.83199 1.43702 1.49550 1.41001 1.07404 1.90915 1.36416 1.40960 1.69708 1.82133 1.20455 1.03322 0.95591 1.74693 1.08377 1.12920 1.11584 1.23829 1.00913 0.99826 0.92140 1.22298 0.91470 0.98513 0.83173 1.46001 1.03331 1.82574 1.02035 1.19071 0.91413 1.41348 0.83003 0.90244 1.24792 0.96096 1.02544 0.97212 1.69836 1.05981 1.55328 1.25645 0.86058 0.79291 0.77340 0.83156 1.20492 1.21833 1.21756 1.22488 0.89619 0.96591 0.90888 0.92621 0.92740 0.91340 0.75648 0.77759 0.85230 0.84651 0.76756 0.75886 0.89245 0.95609 0.90973 0.93766 0.93767 0.94740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.31 37.15 0.35 -1.89 16 2 C 0.15 2.47 2.38 -67.93 -0.16 2.31 16 3 H 0.09 1.62 7.41 -51.93 -0.39 1.23 16 4 N -0.70 -10.96 5.07 -54.85 -0.28 -11.24 16 5 C 0.60 9.57 7.78 -12.47 -0.10 9.48 16 6 O -0.55 -9.62 16.53 5.28 0.09 -9.53 16 7 C -0.09 -1.30 6.99 -83.55 -0.58 -1.88 16 8 C 0.09 0.92 11.27 -16.83 -0.19 0.73 16 9 N -0.36 -3.49 3.41 -62.25 -0.21 -3.71 16 10 C 0.10 0.40 7.02 -5.20 -0.04 0.36 16 11 C 0.50 3.13 8.14 -10.99 -0.09 3.04 16 12 N -0.85 -1.38 8.87 31.22 0.28 -1.11 16 13 O -0.51 -6.33 16.57 5.55 0.09 -6.24 16 14 N -0.03 -0.49 12.89 60.35 0.78 0.29 16 15 N -0.20 -3.09 12.04 32.85 0.40 -2.69 16 16 C -0.15 -2.78 3.47 -89.69 -0.31 -3.09 16 17 C 0.17 4.14 7.08 -2.84 -0.02 4.12 16 18 N -0.61 -16.19 3.70 -177.71 -0.66 -16.85 16 19 C -0.22 -6.37 10.70 -15.06 -0.16 -6.53 16 20 H 0.08 2.21 7.83 -52.48 -0.41 1.80 16 21 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 22 N -0.92 -28.12 11.39 55.49 0.63 -27.49 16 23 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 C 0.13 2.70 7.64 -2.97 -0.02 2.68 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.91 7.52 -51.93 -0.39 0.52 16 31 H 0.41 6.14 8.29 -40.82 -0.34 5.80 16 32 H 0.21 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.13 0.16 8.14 -51.93 -0.42 -0.27 16 34 H 0.14 -0.08 8.08 -51.93 -0.42 -0.50 16 35 H 0.40 -0.87 8.83 -40.82 -0.36 -1.23 16 36 H 0.41 0.65 8.93 -40.82 -0.36 0.28 16 37 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 38 H 0.03 0.66 7.99 -51.93 -0.41 0.24 16 39 H 0.07 1.94 7.17 -51.93 -0.37 1.57 16 40 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 365.84 15.07 5.51 5.51 Total: -1.00 -41.12 365.84 -5.37 -46.49 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -5.55 Total: -0.08 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: -1.42 Total: 8.94 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: 0.93 Total: -62.80 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.18 Total: -15.77 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -41.12 -5.37 -46.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970927316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.506 kcal (2) G-P(sol) polarization free energy of solvation -41.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds