Wall clock time and date at job start Fri Apr 10 2020 18:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47247 * 2 1 4 4 N 1.46503 * 109.47122 * 119.99718 * 2 1 3 5 5 C 1.34778 * 119.99896 * 275.00265 * 4 2 1 6 6 O 1.21593 * 119.99956 * 359.97438 * 5 4 2 7 7 C 1.47525 * 119.99831 * 179.97438 * 5 4 2 8 8 C 1.36601 * 125.76849 * 179.97438 * 7 5 4 9 9 N 1.34811 * 106.83811 * 179.97438 * 8 7 5 10 10 C 1.46495 * 126.59602 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47546 * 124.97404 * 10 9 8 12 12 N 1.34777 * 120.00075 * 179.97438 * 11 10 9 13 13 O 1.21284 * 119.99801 * 0.02562 * 11 10 9 14 14 N 1.40215 * 106.81108 * 0.02562 * 9 8 7 15 15 N 1.28756 * 108.36742 * 359.97438 * 14 9 8 16 16 C 1.52999 * 109.47270 * 239.99592 * 2 1 3 17 17 C 1.53949 * 113.74307 * 158.74173 * 16 2 1 18 18 N 1.47808 * 86.03486 * 222.08363 * 17 16 2 19 19 C 1.36936 * 134.45503 * 204.63753 * 18 17 16 20 20 H 1.08005 * 120.00172 * 179.86947 * 19 18 17 21 21 C 1.38815 * 119.99999 * 359.87915 * 19 18 17 22 22 N 1.31623 * 120.00075 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00099 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47044 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47495 * 119.99264 * 23 21 19 26 26 H 1.48498 * 109.46938 * 239.99421 * 23 21 19 27 27 C 1.47584 * 91.05312 * 24.55076 * 18 17 16 28 28 H 1.09004 * 109.47667 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47170 * 300.00201 * 1 2 3 30 30 H 1.09004 * 109.47335 * 60.00677 * 1 2 3 31 31 H 0.96997 * 120.00053 * 94.99808 * 4 2 1 32 32 H 1.07993 * 126.58084 * 359.96218 * 8 7 5 33 33 H 1.09002 * 109.47096 * 244.97589 * 10 9 8 34 34 H 1.08998 * 109.46976 * 4.96932 * 10 9 8 35 35 H 0.97005 * 120.00299 * 0.02562 * 12 11 10 36 36 H 0.97002 * 120.00041 * 180.02562 * 12 11 10 37 37 H 1.09002 * 112.94527 * 290.33458 * 16 2 1 38 38 H 1.08996 * 113.76698 * 336.35433 * 17 16 2 39 39 H 1.09003 * 113.76493 * 107.74569 * 17 16 2 40 40 H 0.96998 * 119.99986 * 180.02562 * 22 21 19 41 41 H 1.09002 * 113.76400 * 221.15329 * 27 18 17 42 42 H 1.08995 * 113.87123 * 89.76497 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1469 -0.0181 2.3572 6 8 1.8581 1.1617 2.4116 7 6 2.6382 -0.7137 3.5619 8 6 2.8136 -0.1498 4.7936 9 7 3.2733 -1.1222 5.6064 10 6 3.6071 -0.9883 7.0265 11 6 2.8359 -2.0095 7.8223 12 7 2.9847 -2.0736 9.1603 13 8 2.0820 -2.7743 7.2586 14 7 3.3706 -2.2864 4.8310 15 7 2.9885 -2.0092 3.6331 16 6 2.0400 -0.7213 -1.2492 17 6 3.4848 -0.3522 -1.6316 18 7 2.9978 -0.3179 -3.0268 19 6 3.5875 -0.4759 -4.2525 20 1 2.9928 -0.4041 -5.1512 21 6 4.9496 -0.7287 -4.3400 22 7 5.6745 -0.8160 -3.2449 23 14 5.7542 -0.9436 -6.0122 24 1 4.7291 -0.7997 -7.0769 25 1 6.8044 0.0905 -6.1928 26 1 6.3685 -2.2929 -6.0961 27 6 1.6213 -0.0473 -2.5684 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8901 31 1 2.2489 -1.6317 1.1527 32 1 2.6211 0.8778 5.0644 33 1 4.6759 -1.1510 7.1654 34 1 3.3446 0.0128 7.3686 35 1 3.5880 -1.4622 9.6111 36 1 2.4886 -2.7312 9.6725 37 1 1.8528 -1.7949 -1.2261 38 1 3.8047 0.6189 -1.2539 39 1 4.2070 -1.1449 -1.4365 40 1 6.6264 -0.9923 -3.3060 41 1 0.8586 -0.5971 -3.1199 42 1 1.3909 1.0131 -2.4662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970927316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:44 Heat of formation + Delta-G solvation = 48.727831 kcal Electronic energy + Delta-G solvation = -26363.105218 eV Core-core repulsion = 22381.168941 eV Total energy + Delta-G solvation = -3981.936278 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.24596 -40.87549 -40.44442 -39.50420 -36.18457 -35.59165 -34.75199 -34.14288 -32.39764 -31.38420 -29.48994 -29.25936 -26.63525 -25.71590 -24.76542 -23.90854 -22.67044 -22.03406 -21.31583 -20.67957 -19.26458 -18.73821 -18.31396 -17.99061 -17.35993 -17.03670 -16.90001 -16.76777 -16.23332 -15.78799 -15.69418 -15.60479 -15.41285 -14.83077 -14.73687 -14.58006 -14.05448 -13.79848 -13.40572 -13.23975 -13.10271 -13.06120 -12.89850 -12.68960 -12.51162 -12.32238 -11.95780 -11.81952 -11.72837 -11.47999 -11.26972 -11.06670 -11.03807 -10.86259 -10.73349 -10.37616 -9.96543 -8.90289 -7.88865 -5.22623 0.14175 0.67318 1.00625 1.45222 1.46328 1.46943 1.57251 2.15867 2.28488 2.38753 2.48370 3.19703 3.31948 3.40000 3.50557 3.73265 3.81594 3.92231 3.97819 4.00058 4.10214 4.33315 4.38296 4.50917 4.61591 4.72170 4.77185 4.85813 4.89857 5.04273 5.12383 5.27994 5.35002 5.37472 5.49130 5.57787 5.68836 5.81977 5.95189 6.36672 6.47799 6.92905 6.93332 7.17985 7.24936 7.62348 8.58666 9.28295 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021108 B = 0.002359 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.216522 B =11865.922425 C =12696.460933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.160 3.840 3 H 0.071 0.929 4 N -0.702 5.702 5 C 0.605 3.395 6 O -0.567 6.567 7 C -0.127 4.127 8 C 0.116 3.884 9 N -0.347 5.347 10 C 0.093 3.907 11 C 0.500 3.500 12 N -0.825 5.825 13 O -0.581 6.581 14 N -0.070 5.070 15 N -0.232 5.232 16 C -0.113 4.113 17 C 0.168 3.832 18 N -0.645 5.645 19 C -0.232 4.232 20 H 0.087 0.913 21 C -0.074 4.074 22 N -0.956 5.956 23 Si 0.981 3.019 24 H -0.263 1.263 25 H -0.294 1.294 26 H -0.292 1.292 27 C 0.133 3.867 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.410 0.590 32 H 0.248 0.752 33 H 0.163 0.837 34 H 0.191 0.809 35 H 0.425 0.575 36 H 0.411 0.589 37 H 0.097 0.903 38 H 0.008 0.992 39 H 0.037 0.963 40 H 0.247 0.753 41 H 0.065 0.935 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.374 2.891 29.799 30.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.055 3.945 3 H 0.090 0.910 4 N -0.351 5.351 5 C 0.391 3.609 6 O -0.446 6.446 7 C -0.266 4.266 8 C -0.040 4.040 9 N -0.132 5.132 10 C -0.029 4.029 11 C 0.283 3.717 12 N -0.391 5.391 13 O -0.460 6.460 14 N -0.051 5.051 15 N -0.106 5.106 16 C -0.133 4.133 17 C 0.043 3.957 18 N -0.372 5.372 19 C -0.360 4.360 20 H 0.104 0.896 21 C -0.266 4.266 22 N -0.605 5.605 23 Si 0.809 3.191 24 H -0.187 1.187 25 H -0.221 1.221 26 H -0.219 1.219 27 C 0.008 3.992 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.246 0.754 32 H 0.264 0.736 33 H 0.180 0.820 34 H 0.208 0.792 35 H 0.258 0.742 36 H 0.243 0.757 37 H 0.116 0.884 38 H 0.026 0.974 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.083 0.917 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.386 1.791 29.118 29.864 hybrid contribution 0.887 0.349 -0.403 1.035 sum -5.499 2.140 28.715 29.315 Atomic orbital electron populations 1.22060 0.93083 1.02933 1.02700 1.20936 0.95251 0.96028 0.82234 0.91046 1.45892 1.65571 1.14709 1.08963 1.16926 0.76713 0.85305 0.81997 1.90756 1.52981 1.15593 1.85296 1.21531 1.16420 0.91669 0.96971 1.23895 0.93763 0.97702 0.88676 1.50130 1.44155 1.07698 1.11190 1.22404 1.04079 1.03720 0.72744 1.20801 0.82016 0.84579 0.84289 1.43549 1.48801 1.40686 1.06059 1.90901 1.39846 1.43952 1.71280 1.82020 1.21728 1.05573 0.95772 1.74650 1.09372 1.13901 1.12667 1.23458 0.96490 1.00361 0.93019 1.22162 0.93889 0.96487 0.83198 1.46429 1.05952 1.82878 1.01911 1.19513 0.91911 1.40186 0.84427 0.89562 1.25694 0.96874 1.03125 1.00906 1.70045 1.05764 1.56911 1.27822 0.84972 0.78225 0.76705 0.79209 1.18664 1.22090 1.21911 1.22677 0.87519 0.97763 0.91212 0.91399 0.92659 0.90144 0.75428 0.73569 0.81975 0.79153 0.74203 0.75656 0.88448 0.97410 0.94490 0.94421 0.91726 0.93231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 9.31 71.98 0.67 -3.26 16 2 C 0.16 5.18 2.38 44.99 0.11 5.29 16 3 H 0.07 2.60 7.41 -2.39 -0.02 2.58 16 4 N -0.70 -22.26 5.07 -445.71 -2.26 -24.52 16 5 C 0.61 19.21 7.78 86.69 0.67 19.88 16 6 O -0.57 -19.72 16.53 -4.01 -0.07 -19.79 16 7 C -0.13 -3.54 6.99 40.82 0.29 -3.26 16 8 C 0.12 2.12 11.27 83.85 0.95 3.07 16 9 N -0.35 -6.05 3.41 -350.85 -1.20 -7.25 16 10 C 0.09 0.38 7.02 85.63 0.60 0.98 16 11 C 0.50 5.26 8.14 87.66 0.71 5.97 16 12 N -0.83 -0.54 8.87 -173.53 -1.54 -2.08 16 13 O -0.58 -14.55 16.57 -3.04 -0.05 -14.60 16 14 N -0.07 -2.02 12.89 37.02 0.48 -1.54 16 15 N -0.23 -7.32 12.04 -49.99 -0.60 -7.92 16 16 C -0.11 -4.27 3.47 -10.13 -0.04 -4.30 16 17 C 0.17 8.44 7.08 86.44 0.61 9.05 16 18 N -0.65 -34.41 3.70 -716.15 -2.65 -37.06 16 19 C -0.23 -13.48 10.70 84.03 0.90 -12.58 16 20 H 0.09 4.75 7.83 -2.91 -0.02 4.73 16 21 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16 22 N -0.96 -60.37 11.39 21.65 0.25 -60.12 16 23 Si 0.98 47.36 29.55 68.60 2.03 49.38 16 24 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 26 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 27 C 0.13 5.36 7.64 86.48 0.66 6.02 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 1.92 7.52 -2.38 -0.02 1.90 16 31 H 0.41 12.70 8.29 -92.71 -0.77 11.94 16 32 H 0.25 2.10 8.06 -2.91 -0.02 2.08 16 33 H 0.16 -0.31 8.14 -2.39 -0.02 -0.32 16 34 H 0.19 -1.34 8.08 -2.39 -0.02 -1.36 16 35 H 0.43 -3.42 8.83 -92.70 -0.82 -4.24 16 36 H 0.41 0.55 8.93 -92.71 -0.83 -0.28 16 37 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 38 H 0.01 0.43 7.99 -2.39 -0.02 0.41 16 39 H 0.04 2.09 7.17 -2.39 -0.02 2.08 16 40 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 41 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 Total: -1.00 -95.45 365.84 -0.33 -95.79 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -1.32 Total: 6.74 kcal Atomic # 6 Polarization: 16.36 SS G_CDS: 6.60 Total: 22.96 kcal Atomic # 7 Polarization: -132.96 SS G_CDS: -7.53 Total: -140.48 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -0.12 Total: -34.39 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.38 kcal Total: -95.45 -0.33 -95.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970927316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.515 kcal (2) G-P(sol) polarization free energy of solvation -95.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds