Wall clock time and date at job start Fri Apr 10 2020 18:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46682 * 2 1 4 4 N 1.46495 * 109.47361 * 240.00603 * 2 1 3 5 5 C 1.34773 * 120.00444 * 84.99505 * 4 2 1 6 6 O 1.21600 * 120.00035 * 0.02562 * 5 4 2 7 7 C 1.47521 * 120.00334 * 179.97438 * 5 4 2 8 8 C 1.36599 * 125.77395 * 179.71604 * 7 5 4 9 9 N 1.34816 * 106.84300 * 179.90151 * 8 7 5 10 10 C 1.46493 * 126.59580 * 180.10872 * 9 8 7 11 11 C 1.50699 * 109.47064 * 125.26939 * 10 9 8 12 12 N 1.34781 * 119.99816 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00086 * 0.02562 * 11 10 9 14 14 N 1.40213 * 106.80585 * 0.35599 * 9 8 7 15 15 N 1.28754 * 108.36962 * 359.77266 * 14 9 8 16 16 C 1.52994 * 109.47408 * 119.99854 * 2 1 3 17 17 C 1.53496 * 114.20848 * 300.00740 * 16 2 1 18 18 N 1.47070 * 87.98352 * 220.34045 * 17 16 2 19 19 C 1.36935 * 136.05550 * 207.07944 * 18 17 16 20 20 H 1.08005 * 120.00172 * 6.50069 * 19 18 17 21 21 C 1.38815 * 119.99990 * 186.49806 * 19 18 17 22 22 N 1.31619 * 119.99663 * 6.42579 * 21 19 18 23 23 Si 1.86800 * 119.99976 * 186.42252 * 21 19 18 24 24 H 1.48495 * 109.47340 * 265.02201 * 23 21 19 25 25 H 1.48498 * 109.46951 * 25.02385 * 23 21 19 26 26 H 1.48498 * 109.46744 * 145.01993 * 23 21 19 27 27 C 1.47064 * 87.88277 * 27.34197 * 18 17 16 28 28 H 1.09004 * 109.47393 * 60.00317 * 1 2 3 29 29 H 1.09004 * 109.46660 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47372 * 299.99509 * 1 2 3 31 31 H 0.96999 * 120.00021 * 264.99679 * 4 2 1 32 32 H 1.08005 * 126.57371 * 0.03967 * 8 7 5 33 33 H 1.08998 * 109.47450 * 245.27292 * 10 9 8 34 34 H 1.09007 * 109.47026 * 5.27377 * 10 9 8 35 35 H 0.96995 * 120.00265 * 0.02562 * 12 11 10 36 36 H 0.97001 * 119.99755 * 180.02562 * 12 11 10 37 37 H 1.09001 * 113.41134 * 73.20072 * 16 2 1 38 38 H 1.09004 * 113.46865 * 105.56483 * 17 16 2 39 39 H 1.08993 * 113.51976 * 335.12892 * 17 16 2 40 40 H 0.97005 * 119.99413 * 179.97438 * 22 21 19 41 41 H 1.09000 * 113.46743 * 87.44096 * 27 18 17 42 42 H 1.08999 * 113.46191 * 217.87327 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6904 -1.1962 5 6 2.1470 -0.0181 -2.3571 6 8 1.8582 1.1618 -2.4116 7 6 2.6394 -0.7133 -3.5615 8 6 2.8093 -0.1509 -4.7947 9 7 3.2751 -1.1217 -5.6059 10 6 3.6088 -0.9878 -7.0260 11 6 5.0256 -1.4476 -7.2546 12 7 5.5531 -1.4145 -8.4945 13 8 5.6910 -1.8482 -6.3231 14 7 3.3733 -2.2857 -4.8303 15 7 2.9910 -2.0085 -3.6325 16 6 2.0400 -0.7212 1.2492 17 6 1.5898 -0.0847 2.5714 18 7 2.9390 -0.3446 3.0959 19 6 3.4925 -0.5603 4.3296 20 1 2.8564 -0.6648 5.1962 21 6 4.8713 -0.6448 4.4665 22 7 5.6515 -0.3926 3.4370 23 14 5.6194 -1.1163 6.1120 24 1 5.9751 0.1134 6.8646 25 1 4.6362 -1.9083 6.8939 26 1 6.8414 -1.9290 5.8855 27 6 3.4328 -0.2641 1.7130 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 2.2491 -1.6316 -1.1527 32 1 2.6110 0.8753 -5.0670 33 1 2.9283 -1.5993 -7.6185 34 1 3.5129 0.0561 -7.3249 35 1 5.0209 -1.0945 -9.2396 36 1 6.4649 -1.7108 -8.6417 37 1 1.9119 -1.8028 1.2075 38 1 0.8095 -0.6495 3.0816 39 1 1.3544 0.9761 2.4855 40 1 6.6151 -0.4513 3.5328 41 1 3.6837 0.7494 1.3999 42 1 4.2228 -0.9818 1.4919 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970927317.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:47 Heat of formation + Delta-G solvation = 88.483817 kcal Electronic energy + Delta-G solvation = -26362.955296 eV Core-core repulsion = 22382.742968 eV Total energy + Delta-G solvation = -3980.212329 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.37860 -39.99932 -39.45214 -38.03649 -34.94694 -34.69740 -34.31495 -32.17477 -31.28723 -30.26031 -28.75831 -27.46557 -24.87228 -24.06633 -23.44670 -23.10469 -21.52039 -21.11604 -20.18110 -19.32685 -18.41431 -17.82490 -17.30044 -16.68410 -16.42916 -16.02851 -15.87331 -15.56488 -14.84747 -14.74904 -14.57907 -14.36184 -14.00445 -13.78625 -13.43605 -13.31984 -12.95125 -12.36702 -12.23837 -12.05434 -11.60120 -11.44548 -11.31428 -11.11487 -11.08079 -10.91281 -10.70424 -10.39819 -10.34794 -10.29950 -10.03907 -9.78744 -9.70389 -9.40544 -9.12467 -8.70595 -8.70261 -6.80268 -5.70804 -3.01848 0.93041 1.60189 1.73194 1.90300 2.73278 3.30860 3.43240 3.44465 3.48970 3.51838 3.88130 4.04105 4.14305 4.24470 4.51949 4.60020 4.83545 5.07508 5.17736 5.34612 5.42092 5.60913 5.66069 5.77464 5.88284 5.96142 6.04367 6.13097 6.13534 6.31724 6.45577 6.49316 6.58017 6.64229 6.76432 6.88914 7.28973 7.44099 7.55413 7.61484 7.65320 7.92341 8.04163 8.37976 9.10513 9.77234 10.72762 11.47755 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016023 B = 0.002533 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.115346 B =11051.795281 C =12397.604793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.155 3.845 3 H 0.090 0.910 4 N -0.700 5.700 5 C 0.604 3.396 6 O -0.545 6.545 7 C -0.092 4.092 8 C 0.091 3.909 9 N -0.361 5.361 10 C 0.105 3.895 11 C 0.502 3.498 12 N -0.851 5.851 13 O -0.504 6.504 14 N -0.035 5.035 15 N -0.201 5.201 16 C -0.154 4.154 17 C 0.130 3.870 18 N -0.611 5.611 19 C -0.219 4.219 20 H 0.081 0.919 21 C -0.008 4.008 22 N -0.918 5.918 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.280 1.280 26 H -0.290 1.290 27 C 0.170 3.830 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.408 0.592 32 H 0.206 0.794 33 H 0.129 0.871 34 H 0.136 0.864 35 H 0.403 0.597 36 H 0.410 0.590 37 H 0.093 0.907 38 H 0.041 0.959 39 H 0.033 0.967 40 H 0.253 0.747 41 H 0.029 0.971 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.901 0.267 -29.287 30.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.050 3.950 3 H 0.108 0.892 4 N -0.349 5.349 5 C 0.388 3.612 6 O -0.422 6.422 7 C -0.230 4.230 8 C -0.064 4.064 9 N -0.146 5.146 10 C -0.021 4.021 11 C 0.283 3.717 12 N -0.417 5.417 13 O -0.377 6.377 14 N -0.015 5.015 15 N -0.076 5.076 16 C -0.174 4.174 17 C 0.003 3.997 18 N -0.336 5.336 19 C -0.346 4.346 20 H 0.099 0.901 21 C -0.205 4.205 22 N -0.564 5.564 23 Si 0.742 3.258 24 H -0.217 1.217 25 H -0.205 1.205 26 H -0.216 1.216 27 C 0.044 3.956 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.243 0.757 32 H 0.223 0.777 33 H 0.147 0.853 34 H 0.153 0.847 35 H 0.232 0.768 36 H 0.242 0.758 37 H 0.111 0.889 38 H 0.059 0.941 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.157 -0.649 -28.302 29.200 hybrid contribution 0.649 0.577 0.097 0.874 sum -6.508 -0.071 -28.205 28.946 Atomic orbital electron populations 1.22131 0.95472 1.01897 1.02105 1.21058 0.93569 0.97492 0.82880 0.89206 1.45903 1.65389 1.14617 1.08979 1.16715 0.77339 0.85548 0.81631 1.90790 1.51801 1.14770 1.84831 1.21551 1.13941 0.91598 0.95957 1.23310 0.96773 0.96271 0.90078 1.49830 1.45534 1.09429 1.09854 1.21691 0.96017 1.06109 0.78284 1.20366 0.88706 0.78898 0.83682 1.43698 1.19233 1.69624 1.09143 1.90939 1.61202 1.43962 1.41554 1.82124 1.19606 1.03847 0.95938 1.74687 1.08106 1.13228 1.11609 1.23675 1.01552 0.99864 0.92322 1.22313 0.90292 0.96712 0.90378 1.45664 1.03032 1.82132 1.02786 1.18934 0.89876 1.42020 0.83795 0.90119 1.24845 0.95861 1.02119 0.97713 1.69863 1.03220 1.54038 1.29302 0.86104 0.78795 0.77963 0.82923 1.21672 1.20520 1.21624 1.22042 0.92139 0.97876 0.83573 0.92725 0.92617 0.91299 0.75676 0.77738 0.85319 0.84661 0.76825 0.75840 0.88884 0.94106 0.94922 0.93653 0.95340 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.29 37.16 0.35 -1.83 16 2 C 0.15 2.51 2.47 -67.94 -0.17 2.35 16 3 H 0.09 1.64 7.32 -51.93 -0.38 1.26 16 4 N -0.70 -10.85 5.07 -54.86 -0.28 -11.13 16 5 C 0.60 9.49 7.78 -12.48 -0.10 9.40 16 6 O -0.54 -9.56 16.53 5.28 0.09 -9.47 16 7 C -0.09 -1.28 6.99 -83.55 -0.58 -1.87 16 8 C 0.09 0.91 11.27 -16.83 -0.19 0.72 16 9 N -0.36 -3.46 3.41 -62.24 -0.21 -3.67 16 10 C 0.10 0.39 7.02 -5.20 -0.04 0.36 16 11 C 0.50 3.33 8.14 -10.98 -0.09 3.24 16 12 N -0.85 -1.70 8.87 31.22 0.28 -1.42 16 13 O -0.50 -6.70 16.57 5.56 0.09 -6.61 16 14 N -0.03 -0.49 12.89 60.35 0.78 0.29 16 15 N -0.20 -3.06 12.04 32.85 0.40 -2.67 16 16 C -0.15 -2.91 3.67 -89.98 -0.33 -3.24 16 17 C 0.13 2.71 7.33 -8.51 -0.06 2.65 16 18 N -0.61 -16.31 3.76 -184.62 -0.70 -17.00 16 19 C -0.22 -6.36 10.73 -15.06 -0.16 -6.52 16 20 H 0.08 2.25 7.84 -52.48 -0.41 1.83 16 21 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 22 N -0.92 -28.50 11.81 55.49 0.66 -27.84 16 23 Si 0.91 22.86 29.56 -169.99 -5.02 17.83 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 C 0.17 4.16 6.80 -8.38 -0.06 4.11 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.91 7.48 -51.93 -0.39 0.52 16 31 H 0.41 6.03 8.29 -40.82 -0.34 5.70 16 32 H 0.21 1.27 8.06 -52.48 -0.42 0.85 16 33 H 0.13 0.10 8.14 -51.93 -0.42 -0.33 16 34 H 0.14 -0.08 8.08 -51.93 -0.42 -0.50 16 35 H 0.40 -0.80 8.83 -40.82 -0.36 -1.16 16 36 H 0.41 0.86 8.93 -40.82 -0.36 0.50 16 37 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.03 0.67 8.10 -51.93 -0.42 0.25 16 40 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.03 0.74 7.93 -51.93 -0.41 0.33 16 42 H 0.06 1.62 7.57 -51.93 -0.39 1.22 16 LS Contribution 366.28 15.07 5.52 5.52 Total: -1.00 -41.76 366.28 -5.49 -47.25 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -5.56 Total: -0.09 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: -1.53 Total: 9.01 kcal Atomic # 7 Polarization: -64.36 SS G_CDS: 0.92 Total: -63.44 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: 0.18 Total: -16.08 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -41.76 -5.49 -47.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970927317.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.736 kcal (2) G-P(sol) polarization free energy of solvation -41.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds