Wall clock time and date at job start Fri Apr 10 2020 18:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46682 * 2 1 4 4 N 1.46495 * 109.47361 * 240.00603 * 2 1 3 5 5 C 1.34773 * 120.00444 * 84.99505 * 4 2 1 6 6 O 1.21600 * 120.00035 * 0.02562 * 5 4 2 7 7 C 1.47521 * 120.00334 * 179.97438 * 5 4 2 8 8 C 1.36599 * 125.77395 * 179.71604 * 7 5 4 9 9 N 1.34816 * 106.84300 * 179.90151 * 8 7 5 10 10 C 1.46493 * 126.59580 * 180.10872 * 9 8 7 11 11 C 1.50699 * 109.47064 * 125.26939 * 10 9 8 12 12 N 1.34781 * 119.99816 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00086 * 0.02562 * 11 10 9 14 14 N 1.40213 * 106.80585 * 0.35599 * 9 8 7 15 15 N 1.28754 * 108.36962 * 359.77266 * 14 9 8 16 16 C 1.52994 * 109.47408 * 119.99854 * 2 1 3 17 17 C 1.53496 * 114.20848 * 300.00740 * 16 2 1 18 18 N 1.47070 * 87.98352 * 220.34045 * 17 16 2 19 19 C 1.36935 * 136.05550 * 207.07944 * 18 17 16 20 20 H 1.08005 * 120.00172 * 6.50069 * 19 18 17 21 21 C 1.38815 * 119.99990 * 186.49806 * 19 18 17 22 22 N 1.31619 * 119.99663 * 6.42579 * 21 19 18 23 23 Si 1.86800 * 119.99976 * 186.42252 * 21 19 18 24 24 H 1.48495 * 109.47340 * 265.02201 * 23 21 19 25 25 H 1.48498 * 109.46951 * 25.02385 * 23 21 19 26 26 H 1.48498 * 109.46744 * 145.01993 * 23 21 19 27 27 C 1.47064 * 87.88277 * 27.34197 * 18 17 16 28 28 H 1.09004 * 109.47393 * 60.00317 * 1 2 3 29 29 H 1.09004 * 109.46660 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47372 * 299.99509 * 1 2 3 31 31 H 0.96999 * 120.00021 * 264.99679 * 4 2 1 32 32 H 1.08005 * 126.57371 * 0.03967 * 8 7 5 33 33 H 1.08998 * 109.47450 * 245.27292 * 10 9 8 34 34 H 1.09007 * 109.47026 * 5.27377 * 10 9 8 35 35 H 0.96995 * 120.00265 * 0.02562 * 12 11 10 36 36 H 0.97001 * 119.99755 * 180.02562 * 12 11 10 37 37 H 1.09001 * 113.41134 * 73.20072 * 16 2 1 38 38 H 1.09004 * 113.46865 * 105.56483 * 17 16 2 39 39 H 1.08993 * 113.51976 * 335.12892 * 17 16 2 40 40 H 0.97005 * 119.99413 * 179.97438 * 22 21 19 41 41 H 1.09000 * 113.46743 * 87.44096 * 27 18 17 42 42 H 1.08999 * 113.46191 * 217.87327 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6904 -1.1962 5 6 2.1470 -0.0181 -2.3571 6 8 1.8582 1.1618 -2.4116 7 6 2.6394 -0.7133 -3.5615 8 6 2.8093 -0.1509 -4.7947 9 7 3.2751 -1.1217 -5.6059 10 6 3.6088 -0.9878 -7.0260 11 6 5.0256 -1.4476 -7.2546 12 7 5.5531 -1.4145 -8.4945 13 8 5.6910 -1.8482 -6.3231 14 7 3.3733 -2.2857 -4.8303 15 7 2.9910 -2.0085 -3.6325 16 6 2.0400 -0.7212 1.2492 17 6 1.5898 -0.0847 2.5714 18 7 2.9390 -0.3446 3.0959 19 6 3.4925 -0.5603 4.3296 20 1 2.8564 -0.6648 5.1962 21 6 4.8713 -0.6448 4.4665 22 7 5.6515 -0.3926 3.4370 23 14 5.6194 -1.1163 6.1120 24 1 5.9751 0.1134 6.8646 25 1 4.6362 -1.9083 6.8939 26 1 6.8414 -1.9290 5.8855 27 6 3.4328 -0.2641 1.7130 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 2.2491 -1.6316 -1.1527 32 1 2.6110 0.8753 -5.0670 33 1 2.9283 -1.5993 -7.6185 34 1 3.5129 0.0561 -7.3249 35 1 5.0209 -1.0945 -9.2396 36 1 6.4649 -1.7108 -8.6417 37 1 1.9119 -1.8028 1.2075 38 1 0.8095 -0.6495 3.0816 39 1 1.3544 0.9761 2.4855 40 1 6.6151 -0.4513 3.5328 41 1 3.6837 0.7494 1.3999 42 1 4.2228 -0.9818 1.4919 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970927317.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:46 Heat of formation + Delta-G solvation = 51.246886 kcal Electronic energy + Delta-G solvation = -26364.570011 eV Core-core repulsion = 22382.742968 eV Total energy + Delta-G solvation = -3981.827043 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.24681 -40.93010 -40.47138 -39.64312 -36.22003 -35.59732 -34.76524 -34.20477 -32.41296 -31.40015 -29.51962 -29.27435 -26.54222 -25.72666 -24.80178 -23.91588 -22.71083 -22.04227 -21.33969 -20.74778 -19.28050 -18.74401 -18.32558 -17.99636 -17.35243 -17.05652 -16.90904 -16.70268 -16.31499 -15.80820 -15.65663 -15.62460 -15.43859 -14.83233 -14.79250 -14.57436 -14.09244 -13.80852 -13.46041 -13.24995 -13.09078 -12.99491 -12.95378 -12.68037 -12.60077 -12.33634 -12.05880 -11.81529 -11.73447 -11.54440 -11.19915 -11.04728 -10.96853 -10.85436 -10.74411 -10.37828 -9.97344 -8.94524 -7.93435 -5.26287 0.13696 0.67151 1.00953 1.44001 1.46118 1.46939 1.56491 2.13795 2.30352 2.37504 2.46977 3.19578 3.29936 3.41541 3.50849 3.69270 3.78403 3.92393 3.98883 4.01053 4.09803 4.31543 4.38293 4.50521 4.59187 4.72107 4.77895 4.84143 4.89823 5.03354 5.12340 5.21441 5.34957 5.38689 5.44002 5.54882 5.65950 5.80949 5.89754 6.36601 6.47528 6.87949 6.93211 7.17829 7.25080 7.58551 8.60441 9.25725 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016023 B = 0.002533 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.115346 B =11051.795281 C =12397.604793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.163 3.837 3 H 0.069 0.931 4 N -0.702 5.702 5 C 0.605 3.395 6 O -0.567 6.567 7 C -0.127 4.127 8 C 0.116 3.884 9 N -0.347 5.347 10 C 0.095 3.905 11 C 0.497 3.503 12 N -0.825 5.825 13 O -0.584 6.584 14 N -0.070 5.070 15 N -0.232 5.232 16 C -0.117 4.117 17 C 0.133 3.867 18 N -0.644 5.644 19 C -0.229 4.229 20 H 0.091 0.909 21 C -0.074 4.074 22 N -0.958 5.958 23 Si 0.984 3.016 24 H -0.286 1.286 25 H -0.262 1.262 26 H -0.296 1.296 27 C 0.166 3.834 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.411 0.589 32 H 0.248 0.752 33 H 0.168 0.832 34 H 0.191 0.809 35 H 0.426 0.574 36 H 0.411 0.589 37 H 0.104 0.896 38 H 0.064 0.936 39 H 0.045 0.955 40 H 0.247 0.753 41 H 0.008 0.992 42 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.981 0.798 -31.224 32.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.058 3.942 3 H 0.087 0.913 4 N -0.351 5.351 5 C 0.391 3.609 6 O -0.446 6.446 7 C -0.266 4.266 8 C -0.040 4.040 9 N -0.132 5.132 10 C -0.028 4.028 11 C 0.280 3.720 12 N -0.391 5.391 13 O -0.463 6.463 14 N -0.051 5.051 15 N -0.106 5.106 16 C -0.137 4.137 17 C 0.007 3.993 18 N -0.370 5.370 19 C -0.357 4.357 20 H 0.108 0.892 21 C -0.267 4.267 22 N -0.606 5.606 23 Si 0.811 3.189 24 H -0.213 1.213 25 H -0.186 1.186 26 H -0.222 1.222 27 C 0.040 3.960 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.246 0.754 32 H 0.264 0.736 33 H 0.185 0.815 34 H 0.208 0.792 35 H 0.259 0.741 36 H 0.243 0.757 37 H 0.122 0.878 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.025 0.975 42 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -9.292 -0.129 -30.342 31.733 hybrid contribution 1.300 0.479 0.482 1.467 sum -7.991 0.350 -29.860 30.913 Atomic orbital electron populations 1.22046 0.92693 1.03115 1.02746 1.20858 0.95491 0.95838 0.82004 0.91257 1.45885 1.65606 1.14720 1.08928 1.16926 0.76687 0.85301 0.82034 1.90761 1.52974 1.15562 1.85316 1.21523 1.16392 0.91907 0.96760 1.23900 0.94102 0.97439 0.88592 1.50133 1.43572 1.07953 1.11539 1.22410 0.94652 1.10261 0.75440 1.20901 0.89485 0.77798 0.83778 1.43553 1.19400 1.67599 1.08561 1.90925 1.63300 1.47925 1.44103 1.82012 1.20720 1.06146 0.96181 1.74644 1.09020 1.14233 1.12688 1.23341 0.96727 1.00470 0.93135 1.22468 0.88325 0.97773 0.90689 1.46081 1.05772 1.82426 1.02685 1.19416 0.90411 1.40720 0.85156 0.89168 1.25784 0.96491 1.02896 1.01492 1.70076 1.02930 1.55969 1.31655 0.84984 0.77686 0.77593 0.78611 1.21295 1.18637 1.22247 1.21970 0.94254 0.95913 0.83864 0.92428 0.91096 0.90300 0.75373 0.73571 0.81504 0.79185 0.74147 0.75750 0.87829 0.91801 0.93708 0.94408 0.97460 0.96034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.29 71.98 0.67 -3.09 16 2 C 0.16 5.24 2.47 44.99 0.11 5.35 16 3 H 0.07 2.55 7.32 -2.38 -0.02 2.53 16 4 N -0.70 -21.96 5.07 -445.72 -2.26 -24.22 16 5 C 0.61 19.02 7.78 86.69 0.67 19.70 16 6 O -0.57 -19.63 16.53 -4.03 -0.07 -19.70 16 7 C -0.13 -3.49 6.99 40.82 0.29 -3.21 16 8 C 0.12 2.08 11.27 83.85 0.95 3.03 16 9 N -0.35 -5.94 3.41 -350.84 -1.20 -7.14 16 10 C 0.10 0.36 7.02 85.63 0.60 0.96 16 11 C 0.50 5.71 8.14 87.66 0.71 6.42 16 12 N -0.83 -1.26 8.87 -173.53 -1.54 -2.80 16 13 O -0.58 -15.81 16.57 -3.04 -0.05 -15.86 16 14 N -0.07 -1.98 12.89 37.02 0.48 -1.50 16 15 N -0.23 -7.21 12.04 -49.99 -0.60 -7.81 16 16 C -0.12 -4.40 3.67 -10.38 -0.04 -4.44 16 17 C 0.13 5.40 7.33 83.17 0.61 6.01 16 18 N -0.64 -34.84 3.76 -738.00 -2.78 -37.62 16 19 C -0.23 -13.43 10.73 84.03 0.90 -12.53 16 20 H 0.09 4.97 7.84 -2.91 -0.02 4.94 16 21 C -0.07 -4.45 5.50 84.86 0.47 -3.98 16 22 N -0.96 -61.81 11.81 21.65 0.26 -61.56 16 23 Si 0.98 47.80 29.56 68.60 2.03 49.83 16 24 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 25 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 26 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 27 C 0.17 8.50 6.80 83.26 0.57 9.07 16 28 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.08 1.85 7.48 -2.39 -0.02 1.84 16 31 H 0.41 12.43 8.29 -92.71 -0.77 11.66 16 32 H 0.25 2.04 8.06 -2.91 -0.02 2.02 16 33 H 0.17 -0.55 8.14 -2.39 -0.02 -0.57 16 34 H 0.19 -1.37 8.08 -2.38 -0.02 -1.39 16 35 H 0.43 -3.28 8.83 -92.71 -0.82 -4.10 16 36 H 0.41 1.09 8.93 -92.71 -0.83 0.26 16 37 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 38 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 39 H 0.05 1.76 8.10 -2.39 -0.02 1.74 16 40 H 0.25 15.50 8.31 -92.70 -0.77 14.73 16 41 H 0.01 0.41 7.93 -2.39 -0.02 0.40 16 42 H 0.02 1.23 7.57 -2.39 -0.02 1.21 16 Total: -1.00 -98.08 366.28 -0.55 -98.63 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -1.32 Total: 6.46 kcal Atomic # 6 Polarization: 16.79 SS G_CDS: 6.51 Total: 23.30 kcal Atomic # 7 Polarization: -135.01 SS G_CDS: -7.64 Total: -142.65 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -0.12 Total: -35.57 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Total: -98.08 -0.55 -98.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970927317.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.878 kcal (2) G-P(sol) polarization free energy of solvation -98.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds