Wall clock time and date at job start Fri Apr 10 2020 18:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36929 * 119.99741 * 2 1 4 4 H 1.08000 * 119.99989 * 201.71570 * 3 2 1 5 5 C 1.38814 * 120.00411 * 21.72377 * 3 2 1 6 6 N 1.31619 * 119.99757 * 13.66350 * 5 3 2 7 7 Si 1.86797 * 120.00127 * 193.66885 * 5 3 2 8 8 H 1.48502 * 109.47127 * 359.97438 * 7 5 3 9 9 H 1.48491 * 109.47505 * 119.99696 * 7 5 3 10 10 H 1.48508 * 109.46959 * 239.99615 * 7 5 3 11 11 C 1.46496 * 119.99588 * 180.02562 * 2 1 3 12 12 H 1.09005 * 110.63974 * 176.85618 * 11 2 1 13 13 C 1.55162 * 110.87486 * 53.61305 * 11 2 1 14 14 C 1.55128 * 101.48598 * 205.89426 * 13 11 2 15 15 N 1.47428 * 104.72188 * 37.29164 * 14 13 11 16 16 C 1.34774 * 125.64663 * 155.81683 * 15 14 13 17 17 O 1.21282 * 120.00008 * 179.69724 * 16 15 14 18 18 C 1.50694 * 120.00075 * 359.69163 * 16 15 14 19 19 N 1.46506 * 109.47093 * 180.02562 * 18 16 15 20 20 C 1.34590 * 125.74933 * 125.00074 * 19 18 16 21 21 N 1.30867 * 107.62376 * 180.02562 * 20 19 18 22 22 C 1.34546 * 107.27030 * 359.97438 * 21 20 19 23 23 C 1.47872 * 126.04554 * 179.97438 * 22 21 20 24 24 N 1.34776 * 119.99882 * 0.02860 * 23 22 21 25 25 O 1.21555 * 120.00041 * 180.02562 * 23 22 21 26 26 N 1.28846 * 125.74970 * 305.04299 * 19 18 16 27 27 C 1.47021 * 108.70216 * 335.55561 * 15 14 13 28 28 H 1.09004 * 109.47231 * 274.45870 * 1 2 3 29 29 H 1.09003 * 109.47295 * 34.45377 * 1 2 3 30 30 H 1.09000 * 109.47227 * 154.45676 * 1 2 3 31 31 H 0.96998 * 119.99704 * 180.02562 * 6 5 3 32 32 H 1.09002 * 110.99936 * 324.13490 * 13 11 2 33 33 H 1.09005 * 111.00370 * 87.94810 * 13 11 2 34 34 H 1.08999 * 110.49357 * 278.45530 * 14 13 11 35 35 H 1.08995 * 110.34280 * 156.05767 * 14 13 11 36 36 H 1.09005 * 109.47373 * 60.00304 * 18 16 15 37 37 H 1.08997 * 109.47769 * 299.99863 * 18 16 15 38 38 H 1.08002 * 126.18286 * 359.77692 * 20 19 18 39 39 H 0.96998 * 120.00144 * 0.02562 * 24 23 22 40 40 H 0.97007 * 119.99996 * 180.02562 * 24 23 22 41 41 H 1.09005 * 109.88402 * 120.70185 * 27 15 14 42 42 H 1.09003 * 109.88154 * 241.86887 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1721 1.2191 -0.3461 5 6 1.5295 2.3454 0.4449 6 7 0.3967 2.2718 1.1110 7 14 2.3027 4.0101 0.0983 8 1 3.5647 3.8212 -0.6613 9 1 1.3623 4.8359 -0.7010 10 1 2.5961 4.6966 1.3820 11 6 2.1974 -1.2687 -0.0006 12 1 3.2716 -1.0923 -0.0564 13 6 1.7289 -2.1770 -1.1681 14 6 2.0620 -3.5875 -0.6149 15 7 1.7543 -3.5077 0.8247 16 6 1.4461 -4.5504 1.6210 17 8 1.2152 -4.3675 2.7975 18 6 1.3882 -5.9436 1.0495 19 7 1.0347 -6.8917 2.1091 20 6 0.0055 -7.7584 2.0775 21 7 0.0180 -8.4295 3.2009 22 6 1.0570 -7.9760 3.9255 23 6 1.4535 -8.4497 5.2690 24 7 0.7476 -9.4247 5.8753 25 8 2.4161 -7.9598 5.8266 26 7 1.6563 -7.0358 3.2284 27 6 1.8454 -2.1030 1.2490 28 1 -0.3634 0.0799 1.0246 29 1 -0.3634 0.8474 -0.5814 30 1 -0.3634 -0.9272 -0.4431 31 1 -0.0368 3.0820 1.4216 32 1 0.6591 -2.0655 -1.3447 33 1 2.2963 -1.9705 -2.0756 34 1 3.1169 -3.8170 -0.7651 35 1 1.4370 -4.3402 -1.0953 36 1 2.3614 -6.2073 0.6354 37 1 0.6356 -5.9824 0.2620 38 1 -0.7048 -7.8757 1.2724 39 1 -0.0203 -9.8160 5.4302 40 1 1.0075 -9.7353 6.7568 41 1 0.8885 -1.7757 1.6557 42 1 2.6272 -1.9928 2.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971564679.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:49 Heat of formation + Delta-G solvation = 66.214535 kcal Electronic energy + Delta-G solvation = -26817.633862 eV Core-core repulsion = 22836.455865 eV Total energy + Delta-G solvation = -3981.177997 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.67910 -39.98570 -39.27094 -37.65130 -34.93910 -34.77529 -33.74135 -32.11141 -31.72363 -29.97679 -29.17136 -27.57913 -26.12743 -24.80036 -23.63094 -22.55982 -22.50076 -20.85970 -19.63617 -19.28683 -18.45621 -17.63167 -17.30114 -17.09218 -16.50968 -16.37317 -15.97877 -15.45162 -15.11966 -14.88672 -14.64002 -14.16176 -14.14452 -13.55272 -13.44962 -13.26045 -12.66831 -12.57944 -12.30334 -12.16895 -11.97514 -11.66385 -11.01567 -10.88310 -10.76835 -10.68749 -10.66104 -10.56940 -10.54360 -10.35683 -10.13649 -9.96096 -9.93861 -9.91344 -9.59654 -8.65165 -8.52063 -6.92056 -5.83567 -3.30557 1.23390 1.74160 1.87283 2.46904 2.88102 3.12434 3.24662 3.32471 3.39821 3.41818 3.89937 4.03810 4.23194 4.39873 4.47801 4.54053 4.77678 4.80673 5.08691 5.17192 5.34456 5.46654 5.61077 5.73506 5.76755 5.85599 6.02823 6.15326 6.20600 6.22183 6.34921 6.49150 6.53186 6.71236 6.74570 7.00551 7.25277 7.52445 7.62605 7.71589 7.77529 8.03614 8.07025 8.26772 9.10639 9.72954 10.20609 11.21131 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024548 B = 0.002431 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.333900 B =11514.099354 C =12056.423697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.585 5.585 3 C -0.263 4.263 4 H 0.072 0.928 5 C 0.004 3.996 6 N -0.903 5.903 7 Si 0.908 3.092 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.173 3.827 12 H 0.080 0.920 13 C -0.153 4.153 14 C 0.095 3.905 15 N -0.608 5.608 16 C 0.508 3.492 17 O -0.513 6.513 18 C 0.104 3.896 19 N -0.287 5.287 20 C 0.194 3.806 21 N -0.486 5.486 22 C 0.127 3.873 23 C 0.625 3.375 24 N -0.835 5.835 25 O -0.518 6.518 26 N -0.214 5.214 27 C 0.088 3.912 28 H 0.030 0.970 29 H 0.046 0.954 30 H 0.002 0.998 31 H 0.254 0.746 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.128 0.872 37 H 0.138 0.862 38 H 0.228 0.772 39 H 0.410 0.590 40 H 0.410 0.590 41 H 0.074 0.926 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.790 -23.079 -4.770 23.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.305 5.305 3 C -0.392 4.392 4 H 0.090 0.910 5 C -0.195 4.195 6 N -0.547 5.547 7 Si 0.737 3.263 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.216 1.216 11 C 0.062 3.938 12 H 0.098 0.902 13 C -0.193 4.193 14 C -0.028 4.028 15 N -0.343 5.343 16 C 0.293 3.707 17 O -0.387 6.387 18 C -0.021 4.021 19 N -0.083 5.083 20 C -0.101 4.101 21 N -0.212 5.212 22 C -0.153 4.153 23 C 0.405 3.595 24 N -0.400 5.400 25 O -0.390 6.390 26 N -0.053 5.053 27 C -0.037 4.037 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.020 0.980 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.146 0.854 37 H 0.156 0.844 38 H 0.244 0.756 39 H 0.240 0.760 40 H 0.242 0.758 41 H 0.093 0.907 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.052 -22.315 -3.437 22.603 hybrid contribution -0.233 0.757 -0.365 0.872 sum -1.285 -21.558 -3.802 21.928 Atomic orbital electron populations 1.20821 0.82369 0.95749 0.99557 1.43952 1.01944 0.99902 1.84698 1.19265 0.97931 0.84863 1.37186 0.90995 1.25059 0.97783 0.98720 0.97905 1.70090 1.18799 1.27207 1.38613 0.86144 0.78543 0.83973 0.77601 1.20219 1.21535 1.21641 1.21362 0.96567 0.85970 0.89903 0.90195 1.23386 1.02959 0.92877 1.00073 1.22490 1.00377 0.99607 0.80296 1.48514 1.67801 1.07904 1.10114 1.19777 0.79158 0.85140 0.86635 1.90853 1.48259 1.84304 1.15308 1.21934 1.06117 0.86953 0.87117 1.46949 1.21091 1.27246 1.12976 1.26477 0.93845 0.90696 0.99072 1.71181 1.19677 1.26936 1.03397 1.23584 0.95083 0.97828 0.98768 1.16236 0.82124 0.79331 0.81811 1.43412 1.34182 1.39927 1.22518 1.90899 1.27106 1.56524 1.64450 1.74459 1.20984 1.15793 0.94093 1.23052 1.02623 0.77648 1.00335 0.95144 0.93508 0.97976 0.93578 0.90209 0.90146 0.91052 0.91242 0.85421 0.84382 0.75567 0.75983 0.75822 0.90731 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.69 7.82 59.85 0.47 4.15 16 2 N -0.58 -13.59 2.93 -171.39 -0.50 -14.09 16 3 C -0.26 -6.84 9.63 -15.06 -0.14 -6.99 16 4 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 5 C 0.00 0.12 5.08 -17.43 -0.09 0.03 16 6 N -0.90 -25.69 10.68 55.49 0.59 -25.10 16 7 Si 0.91 21.21 29.58 -169.99 -5.03 16.18 16 8 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 9 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 C 0.17 3.14 3.43 -66.10 -0.23 2.91 16 12 H 0.08 1.44 7.92 -51.93 -0.41 1.03 16 13 C -0.15 -2.04 6.61 -24.46 -0.16 -2.20 16 14 C 0.10 0.95 6.70 -2.41 -0.02 0.93 16 15 N -0.61 -8.55 3.32 -170.39 -0.57 -9.11 16 16 C 0.51 7.35 7.86 -10.99 -0.09 7.26 16 17 O -0.51 -10.33 16.00 5.56 0.09 -10.24 16 18 C 0.10 0.88 5.93 -5.19 -0.03 0.85 16 19 N -0.29 -3.29 3.18 -63.76 -0.20 -3.49 16 20 C 0.19 1.73 12.57 -90.48 -1.14 0.60 16 21 N -0.49 -5.56 11.09 -12.36 -0.14 -5.70 16 22 C 0.13 1.82 7.96 -156.36 -1.24 0.57 16 23 C 0.62 8.66 8.10 -12.32 -0.10 8.56 16 24 N -0.83 -7.03 8.87 30.54 0.27 -6.76 16 25 O -0.52 -9.25 17.92 5.32 0.10 -9.16 16 26 N -0.21 -3.38 11.04 32.07 0.35 -3.03 16 27 C 0.09 1.60 6.51 -3.07 -0.02 1.58 16 28 H 0.03 0.79 7.33 -51.93 -0.38 0.41 16 29 H 0.05 1.17 7.23 -51.93 -0.38 0.80 16 30 H 0.00 0.04 6.04 -51.93 -0.31 -0.28 16 31 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.08 1.14 6.07 -51.93 -0.32 0.83 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.44 7.48 -51.93 -0.39 0.05 16 36 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.14 0.50 7.77 -51.93 -0.40 0.10 16 38 H 0.23 0.73 8.06 -52.49 -0.42 0.30 16 39 H 0.41 2.63 8.54 -40.82 -0.35 2.28 16 40 H 0.41 2.54 8.93 -40.82 -0.36 2.18 16 41 H 0.07 1.60 7.12 -51.93 -0.37 1.23 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 355.31 15.07 5.35 5.35 Total: -1.00 -38.95 355.31 -7.80 -46.75 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -5.33 Total: 0.14 kcal Atomic # 6 Polarization: 21.05 SS G_CDS: -2.79 Total: 18.27 kcal Atomic # 7 Polarization: -67.09 SS G_CDS: -0.19 Total: -67.28 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: 0.18 Total: -19.40 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -38.95 -7.80 -46.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971564679.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.966 kcal (2) G-P(sol) polarization free energy of solvation -38.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds