Wall clock time and date at job start Fri Apr 10 2020 18:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36929 * 119.99741 * 2 1 4 4 H 1.08000 * 119.99989 * 201.71570 * 3 2 1 5 5 C 1.38814 * 120.00411 * 21.72377 * 3 2 1 6 6 N 1.31619 * 119.99757 * 13.66350 * 5 3 2 7 7 Si 1.86797 * 120.00127 * 193.66885 * 5 3 2 8 8 H 1.48502 * 109.47127 * 359.97438 * 7 5 3 9 9 H 1.48491 * 109.47505 * 119.99696 * 7 5 3 10 10 H 1.48508 * 109.46959 * 239.99615 * 7 5 3 11 11 C 1.46496 * 119.99588 * 180.02562 * 2 1 3 12 12 H 1.09005 * 110.63974 * 176.85618 * 11 2 1 13 13 C 1.55162 * 110.87486 * 53.61305 * 11 2 1 14 14 C 1.55128 * 101.48598 * 205.89426 * 13 11 2 15 15 N 1.47428 * 104.72188 * 37.29164 * 14 13 11 16 16 C 1.34774 * 125.64663 * 155.81683 * 15 14 13 17 17 O 1.21282 * 120.00008 * 179.69724 * 16 15 14 18 18 C 1.50694 * 120.00075 * 359.69163 * 16 15 14 19 19 N 1.46506 * 109.47093 * 180.02562 * 18 16 15 20 20 C 1.34590 * 125.74933 * 125.00074 * 19 18 16 21 21 N 1.30867 * 107.62376 * 180.02562 * 20 19 18 22 22 C 1.34546 * 107.27030 * 359.97438 * 21 20 19 23 23 C 1.47872 * 126.04554 * 179.97438 * 22 21 20 24 24 N 1.34776 * 119.99882 * 0.02860 * 23 22 21 25 25 O 1.21555 * 120.00041 * 180.02562 * 23 22 21 26 26 N 1.28846 * 125.74970 * 305.04299 * 19 18 16 27 27 C 1.47021 * 108.70216 * 335.55561 * 15 14 13 28 28 H 1.09004 * 109.47231 * 274.45870 * 1 2 3 29 29 H 1.09003 * 109.47295 * 34.45377 * 1 2 3 30 30 H 1.09000 * 109.47227 * 154.45676 * 1 2 3 31 31 H 0.96998 * 119.99704 * 180.02562 * 6 5 3 32 32 H 1.09002 * 110.99936 * 324.13490 * 13 11 2 33 33 H 1.09005 * 111.00370 * 87.94810 * 13 11 2 34 34 H 1.08999 * 110.49357 * 278.45530 * 14 13 11 35 35 H 1.08995 * 110.34280 * 156.05767 * 14 13 11 36 36 H 1.09005 * 109.47373 * 60.00304 * 18 16 15 37 37 H 1.08997 * 109.47769 * 299.99863 * 18 16 15 38 38 H 1.08002 * 126.18286 * 359.77692 * 20 19 18 39 39 H 0.96998 * 120.00144 * 0.02562 * 24 23 22 40 40 H 0.97007 * 119.99996 * 180.02562 * 24 23 22 41 41 H 1.09005 * 109.88402 * 120.70185 * 27 15 14 42 42 H 1.09003 * 109.88154 * 241.86887 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1721 1.2191 -0.3461 5 6 1.5295 2.3454 0.4449 6 7 0.3967 2.2718 1.1110 7 14 2.3027 4.0101 0.0983 8 1 3.5647 3.8212 -0.6613 9 1 1.3623 4.8359 -0.7010 10 1 2.5961 4.6966 1.3820 11 6 2.1974 -1.2687 -0.0006 12 1 3.2716 -1.0923 -0.0564 13 6 1.7289 -2.1770 -1.1681 14 6 2.0620 -3.5875 -0.6149 15 7 1.7543 -3.5077 0.8247 16 6 1.4461 -4.5504 1.6210 17 8 1.2152 -4.3675 2.7975 18 6 1.3882 -5.9436 1.0495 19 7 1.0347 -6.8917 2.1091 20 6 0.0055 -7.7584 2.0775 21 7 0.0180 -8.4295 3.2009 22 6 1.0570 -7.9760 3.9255 23 6 1.4535 -8.4497 5.2690 24 7 0.7476 -9.4247 5.8753 25 8 2.4161 -7.9598 5.8266 26 7 1.6563 -7.0358 3.2284 27 6 1.8454 -2.1030 1.2490 28 1 -0.3634 0.0799 1.0246 29 1 -0.3634 0.8474 -0.5814 30 1 -0.3634 -0.9272 -0.4431 31 1 -0.0368 3.0820 1.4216 32 1 0.6591 -2.0655 -1.3447 33 1 2.2963 -1.9705 -2.0756 34 1 3.1169 -3.8170 -0.7651 35 1 1.4370 -4.3402 -1.0953 36 1 2.3614 -6.2073 0.6354 37 1 0.6356 -5.9824 0.2620 38 1 -0.7048 -7.8757 1.2724 39 1 -0.0203 -9.8160 5.4302 40 1 1.0075 -9.7353 6.7568 41 1 0.8885 -1.7757 1.6557 42 1 2.6272 -1.9928 2.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971564679.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:49 Heat of formation + Delta-G solvation = 33.835050 kcal Electronic energy + Delta-G solvation = -26819.037942 eV Core-core repulsion = 22836.455865 eV Total energy + Delta-G solvation = -3982.582077 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.50354 -41.14477 -40.32169 -38.99510 -36.59175 -35.66364 -34.63802 -33.55966 -32.83983 -31.39074 -30.19480 -28.77716 -28.07227 -25.88066 -24.95031 -23.89961 -23.32943 -21.78447 -20.95662 -20.49539 -19.30412 -18.97267 -18.58436 -18.13702 -17.58843 -17.41549 -17.18394 -16.68764 -16.30855 -15.90615 -15.85557 -15.41750 -15.09594 -15.05986 -14.90368 -14.49660 -14.17934 -13.73641 -13.63635 -13.32762 -13.12720 -12.94940 -12.80325 -12.52645 -12.40309 -12.19940 -12.07430 -11.80799 -11.69267 -11.62264 -11.54651 -11.39455 -11.19224 -10.87709 -10.66704 -10.53009 -9.72036 -8.85257 -7.86455 -5.35090 0.29279 0.97219 1.17478 1.43472 1.45529 1.47156 1.57341 1.87559 2.21872 2.32060 2.49335 3.13568 3.24912 3.29450 3.57470 3.60987 3.85049 3.89005 4.01893 4.05215 4.15361 4.28395 4.38842 4.48763 4.68333 4.81193 4.82408 4.90025 5.04021 5.16104 5.21486 5.23541 5.33463 5.46340 5.54925 5.62962 5.69952 5.73379 6.19513 6.28715 6.46142 6.94855 7.01244 7.10955 7.16652 7.82526 8.25321 9.16789 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024548 B = 0.002431 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.333900 B =11514.099354 C =12056.423697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.603 5.603 3 C -0.263 4.263 4 H 0.080 0.920 5 C -0.057 4.057 6 N -0.941 5.941 7 Si 0.970 3.030 8 H -0.261 1.261 9 H -0.290 1.290 10 H -0.299 1.299 11 C 0.163 3.837 12 H 0.080 0.920 13 C -0.140 4.140 14 C 0.099 3.901 15 N -0.606 5.606 16 C 0.500 3.500 17 O -0.584 6.584 18 C 0.111 3.889 19 N -0.294 5.294 20 C 0.215 3.785 21 N -0.497 5.497 22 C 0.108 3.892 23 C 0.616 3.384 24 N -0.804 5.804 25 O -0.573 6.573 26 N -0.271 5.271 27 C 0.099 3.901 28 H -0.010 1.010 29 H 0.020 0.980 30 H 0.040 0.960 31 H 0.247 0.753 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.129 0.871 36 H 0.162 0.838 37 H 0.204 0.796 38 H 0.289 0.711 39 H 0.423 0.577 40 H 0.421 0.579 41 H 0.032 0.968 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.933 -26.105 -8.535 27.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.324 5.324 3 C -0.393 4.393 4 H 0.097 0.903 5 C -0.252 4.252 6 N -0.588 5.588 7 Si 0.799 3.201 8 H -0.185 1.185 9 H -0.217 1.217 10 H -0.227 1.227 11 C 0.054 3.946 12 H 0.098 0.902 13 C -0.179 4.179 14 C -0.022 4.022 15 N -0.340 5.340 16 C 0.288 3.712 17 O -0.464 6.464 18 C -0.012 4.012 19 N -0.090 5.090 20 C -0.079 4.079 21 N -0.223 5.223 22 C -0.171 4.171 23 C 0.397 3.603 24 N -0.370 5.370 25 O -0.450 6.450 26 N -0.110 5.110 27 C -0.027 4.027 28 H 0.008 0.992 29 H 0.038 0.962 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.146 0.854 36 H 0.179 0.821 37 H 0.221 0.779 38 H 0.304 0.696 39 H 0.255 0.745 40 H 0.256 0.744 41 H 0.051 0.949 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.192 -25.434 -7.269 26.479 hybrid contribution -0.211 1.603 0.782 1.796 sum -1.402 -23.830 -6.487 24.737 Atomic orbital electron populations 1.20469 0.82800 0.96362 0.96912 1.44158 1.02053 1.01148 1.85005 1.19669 0.98150 0.86070 1.35382 0.90265 1.25850 0.98601 1.02144 0.98600 1.70276 1.20502 1.27362 1.40629 0.85151 0.78227 0.79856 0.76883 1.18451 1.21716 1.22658 1.21618 0.96250 0.84772 0.91977 0.90214 1.23259 1.02634 0.93464 0.98544 1.22844 1.03437 0.98753 0.77121 1.48539 1.67478 1.05846 1.12128 1.20943 0.77159 0.87304 0.85788 1.90836 1.51186 1.85679 1.18652 1.22361 1.10375 0.81698 0.86723 1.47171 1.21410 1.27972 1.12398 1.27682 0.92814 0.88248 0.99143 1.71172 1.18976 1.27866 1.04291 1.23670 0.96158 0.98198 0.99104 1.16525 0.81873 0.79778 0.82102 1.43205 1.33340 1.37850 1.22618 1.90857 1.29607 1.58688 1.65825 1.74370 1.23322 1.17074 0.96253 1.22492 0.99234 0.81292 0.99664 0.99214 0.96166 0.94218 0.94384 0.90899 0.87938 0.88301 0.85354 0.82069 0.77925 0.69589 0.74454 0.74449 0.94947 0.94921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.56 7.82 127.77 1.00 9.56 16 2 N -0.60 -28.43 2.93 -696.15 -2.04 -30.47 16 3 C -0.26 -13.85 9.63 84.04 0.81 -13.04 16 4 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 5 C -0.06 -3.16 5.08 84.86 0.43 -2.73 16 6 N -0.94 -56.12 10.68 21.65 0.23 -55.89 16 7 Si 0.97 44.57 29.58 68.60 2.03 46.59 16 8 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 9 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 10 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 11 C 0.16 5.79 3.43 46.18 0.16 5.94 16 12 H 0.08 2.81 7.92 -2.38 -0.02 2.79 16 13 C -0.14 -3.17 6.61 32.06 0.21 -2.95 16 14 C 0.10 1.40 6.70 86.93 0.58 1.98 16 15 N -0.61 -15.61 3.32 -811.37 -2.70 -18.31 16 16 C 0.50 13.45 7.86 87.66 0.69 14.14 16 17 O -0.58 -24.20 16.00 -3.04 -0.05 -24.24 16 18 C 0.11 1.30 5.93 85.63 0.51 1.81 16 19 N -0.29 -5.79 3.18 -355.64 -1.13 -6.92 16 20 C 0.22 2.89 12.57 180.30 2.27 5.15 16 21 N -0.50 -10.19 11.09 -193.03 -2.14 -12.33 16 22 C 0.11 3.06 7.96 137.13 1.09 4.15 16 23 C 0.62 17.54 8.10 86.79 0.70 18.24 16 24 N -0.80 -13.15 8.87 -175.58 -1.56 -14.71 16 25 O -0.57 -21.65 17.92 -3.89 -0.07 -21.72 16 26 N -0.27 -8.41 11.04 -52.44 -0.58 -8.99 16 27 C 0.10 3.73 6.51 86.73 0.56 4.30 16 28 H -0.01 -0.58 7.33 -2.39 -0.02 -0.60 16 29 H 0.02 1.03 7.23 -2.39 -0.02 1.01 16 30 H 0.04 1.55 6.04 -2.39 -0.01 1.53 16 31 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 32 H 0.07 1.79 6.07 -2.39 -0.01 1.78 16 33 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 34 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.13 0.46 7.48 -2.39 -0.02 0.44 16 36 H 0.16 0.90 8.14 -2.38 -0.02 0.88 16 37 H 0.20 -0.32 7.77 -2.39 -0.02 -0.33 16 38 H 0.29 -0.28 8.06 -2.91 -0.02 -0.31 16 39 H 0.42 4.86 8.54 -92.71 -0.79 4.07 16 40 H 0.42 5.01 8.93 -92.70 -0.83 4.18 16 41 H 0.03 1.48 7.12 -2.38 -0.02 1.46 16 42 H 0.03 1.37 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -98.55 355.31 0.48 -98.07 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -0.53 Total: 2.38 kcal Atomic # 6 Polarization: 37.53 SS G_CDS: 9.01 Total: 46.54 kcal Atomic # 7 Polarization: -137.70 SS G_CDS: -9.92 Total: -147.62 kcal Atomic # 8 Polarization: -45.85 SS G_CDS: -0.12 Total: -45.97 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -98.55 0.48 -98.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971564679.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.906 kcal (2) G-P(sol) polarization free energy of solvation -98.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds