Wall clock time and date at job start Fri Apr 10 2020 18:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36937 * 119.99938 * 2 1 4 4 H 1.08001 * 119.99988 * 203.48361 * 3 2 1 5 5 C 1.38809 * 120.00469 * 23.48936 * 3 2 1 6 6 N 1.31623 * 119.99651 * 15.09838 * 5 3 2 7 7 Si 1.86799 * 120.00544 * 195.10335 * 5 3 2 8 8 H 1.48496 * 109.46885 * 59.99266 * 7 5 3 9 9 H 1.48497 * 109.47127 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46789 * 299.99374 * 7 5 3 11 11 C 1.46503 * 120.00193 * 179.97438 * 2 1 3 12 12 H 1.08997 * 110.64304 * 178.31061 * 11 2 1 13 13 C 1.55153 * 110.72212 * 301.45753 * 11 2 1 14 14 C 1.54914 * 101.58278 * 154.03874 * 13 11 2 15 15 N 1.47426 * 104.83204 * 322.99104 * 14 13 11 16 16 C 1.34766 * 125.65074 * 204.09257 * 15 14 13 17 17 O 1.21285 * 120.00314 * 180.02562 * 16 15 14 18 18 C 1.50702 * 120.00177 * 0.02562 * 16 15 14 19 19 N 1.46498 * 109.47586 * 180.02562 * 18 16 15 20 20 C 1.34577 * 125.74982 * 125.00000 * 19 18 16 21 21 N 1.30874 * 107.62751 * 179.97438 * 20 19 18 22 22 C 1.34553 * 107.26629 * 0.02562 * 21 20 19 23 23 C 1.47871 * 126.04504 * 179.97438 * 22 21 20 24 24 N 1.34770 * 120.00244 * 0.02677 * 23 22 21 25 25 O 1.21557 * 119.99314 * 180.02562 * 23 22 21 26 26 N 1.28853 * 125.74312 * 304.99997 * 19 18 16 27 27 C 1.47030 * 108.70300 * 24.35580 * 15 14 13 28 28 H 1.08992 * 109.46933 * 275.21085 * 1 2 3 29 29 H 1.08996 * 109.46753 * 35.21076 * 1 2 3 30 30 H 1.09004 * 109.46504 * 155.21032 * 1 2 3 31 31 H 0.96998 * 119.99903 * 180.02562 * 6 5 3 32 32 H 1.09002 * 111.00286 * 35.96496 * 13 11 2 33 33 H 1.08999 * 111.03827 * 272.13320 * 13 11 2 34 34 H 1.08996 * 110.36408 * 204.15548 * 14 13 11 35 35 H 1.08997 * 110.45567 * 81.87313 * 14 13 11 36 36 H 1.09007 * 109.46378 * 60.00074 * 18 16 15 37 37 H 1.09005 * 109.46993 * 300.00652 * 18 16 15 38 38 H 1.08003 * 126.18996 * 0.04259 * 20 19 18 39 39 H 0.96999 * 119.99885 * 359.97438 * 24 23 22 40 40 H 0.96995 * 120.00283 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.88469 * 118.12974 * 27 15 14 42 42 H 1.08997 * 109.87925 * 239.29716 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1626 1.2247 -0.3727 5 6 1.5420 2.3383 0.4791 6 7 0.4427 2.2524 1.1979 7 14 2.2841 4.0109 0.1037 8 1 2.3290 4.2137 -1.3667 9 1 1.4514 5.0724 0.7242 10 1 3.6615 4.0762 0.6548 11 6 2.1976 -1.2687 0.0006 12 1 3.2727 -1.0917 -0.0296 13 6 1.8162 -2.1223 1.2388 14 6 2.1053 -3.5563 0.7291 15 7 1.6994 -3.5421 -0.6881 16 6 1.3360 -4.6192 -1.4119 17 8 1.0201 -4.4894 -2.5757 18 6 1.3221 -5.9851 -0.7753 19 7 0.8955 -6.9798 -1.7626 20 6 1.5768 -8.0882 -2.1070 21 7 0.8751 -8.7189 -3.0140 22 6 -0.2402 -7.9975 -3.2291 23 6 -1.3244 -8.3334 -4.1768 24 7 -1.2451 -9.4535 -4.9220 25 8 -2.2872 -7.5991 -4.2837 26 7 -0.1952 -6.9409 -2.4474 27 6 1.7627 -2.1590 -1.1828 28 1 -0.3633 0.0933 1.0234 29 1 -0.3633 0.8396 -0.5925 30 1 -0.3632 -0.9330 -0.4309 31 1 0.0178 3.0576 1.5324 32 1 0.7618 -2.0011 1.4872 33 1 2.4473 -1.8765 2.0929 34 1 1.5139 -4.2832 1.2858 35 1 3.1674 -3.7850 0.8172 36 1 0.6287 -5.9869 0.0658 37 1 2.3233 -6.2312 -0.4213 38 1 2.5298 -8.4012 -1.7066 39 1 -0.4766 -10.0393 -4.8369 40 1 -1.9565 -9.6741 -5.5434 41 1 2.4910 -2.0871 -1.9906 42 1 0.7804 -1.8469 -1.5376 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971564680.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:52 Heat of formation + Delta-G solvation = 65.067036 kcal Electronic energy + Delta-G solvation = -26801.200659 eV Core-core repulsion = 22819.972902 eV Total energy + Delta-G solvation = -3981.227757 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.70194 -40.02789 -39.28596 -37.66115 -34.92574 -34.80056 -33.75870 -32.12499 -31.71144 -30.02958 -29.19022 -27.57870 -26.10228 -24.81979 -23.67079 -22.57385 -22.43523 -20.87802 -19.70023 -19.27611 -18.46962 -17.67712 -17.26254 -17.10549 -16.56381 -16.39766 -16.05373 -15.40379 -15.22124 -14.79396 -14.45217 -14.34621 -14.13222 -13.63525 -13.44497 -13.26144 -12.66285 -12.61712 -12.44194 -12.14779 -11.87711 -11.51360 -11.06660 -10.83646 -10.79707 -10.70974 -10.66830 -10.58100 -10.54412 -10.35027 -10.17416 -9.97726 -9.96343 -9.92922 -9.62802 -8.64554 -8.55726 -6.88545 -5.82730 -3.30690 1.21542 1.72049 1.84365 2.41661 2.85025 3.10606 3.22540 3.33795 3.40367 3.41399 3.87385 4.01356 4.21147 4.40924 4.45229 4.52206 4.76837 4.85272 5.12552 5.19545 5.36491 5.43346 5.60153 5.71352 5.77539 5.87065 6.00298 6.12215 6.17200 6.25183 6.37909 6.47889 6.52092 6.72451 6.76127 6.99019 7.26797 7.46624 7.63533 7.71650 7.75487 8.00947 8.02846 8.28805 9.11410 9.74132 10.22710 11.21834 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026291 B = 0.002397 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.751273 B =11679.622726 C =12231.128133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.156 3.844 2 N -0.584 5.584 3 C -0.265 4.265 4 H 0.069 0.931 5 C 0.007 3.993 6 N -0.902 5.902 7 Si 0.906 3.094 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.174 3.826 12 H 0.080 0.920 13 C -0.151 4.151 14 C 0.093 3.907 15 N -0.607 5.607 16 C 0.510 3.490 17 O -0.515 6.515 18 C 0.104 3.896 19 N -0.287 5.287 20 C 0.194 3.806 21 N -0.486 5.486 22 C 0.127 3.873 23 C 0.624 3.376 24 N -0.835 5.835 25 O -0.517 6.517 26 N -0.214 5.214 27 C 0.088 3.912 28 H 0.035 0.965 29 H 0.041 0.959 30 H 0.004 0.996 31 H 0.255 0.745 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.129 0.871 37 H 0.139 0.861 38 H 0.228 0.772 39 H 0.410 0.590 40 H 0.410 0.590 41 H 0.063 0.937 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.069 -23.959 -1.276 24.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.305 5.305 3 C -0.394 4.394 4 H 0.087 0.913 5 C -0.192 4.192 6 N -0.545 5.545 7 Si 0.736 3.264 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.208 1.208 11 C 0.063 3.937 12 H 0.098 0.902 13 C -0.191 4.191 14 C -0.030 4.030 15 N -0.342 5.342 16 C 0.295 3.705 17 O -0.390 6.390 18 C -0.021 4.021 19 N -0.083 5.083 20 C -0.102 4.102 21 N -0.212 5.212 22 C -0.152 4.152 23 C 0.404 3.596 24 N -0.401 5.401 25 O -0.389 6.389 26 N -0.053 5.053 27 C -0.036 4.036 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.022 0.978 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.147 0.853 37 H 0.157 0.843 38 H 0.244 0.756 39 H 0.240 0.760 40 H 0.242 0.758 41 H 0.081 0.919 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.740 -22.974 -1.981 23.360 hybrid contribution 0.833 0.620 0.028 1.039 sum 4.574 -22.353 -1.953 22.900 Atomic orbital electron populations 1.20819 0.82451 0.95801 0.99712 1.43852 1.01843 0.99852 1.84914 1.19137 0.98892 0.85314 1.36090 0.91287 1.25027 0.98023 0.98644 0.97547 1.70060 1.20933 1.27675 1.35872 0.86317 0.78346 0.83604 0.78143 1.20962 1.21591 1.20833 1.21288 0.96430 0.86034 0.89945 0.90211 1.23401 1.03166 0.92083 1.00477 1.22506 0.99593 1.00143 0.80786 1.48434 1.65593 1.07665 1.12489 1.19752 0.79096 0.84869 0.86817 1.90844 1.46940 1.85081 1.16086 1.21924 1.04314 0.86205 0.89666 1.46946 1.13767 1.18358 1.29197 1.26470 1.00869 0.86219 0.96594 1.71188 1.04521 1.29731 1.15767 1.23596 0.96776 0.92134 1.02738 1.16238 0.83194 0.81254 0.78872 1.43408 1.27428 1.25236 1.43980 1.90906 1.31851 1.49634 1.66481 1.74487 1.04876 1.19917 1.05973 1.22847 1.02715 0.78921 0.99159 0.94679 0.94065 0.97781 0.93526 0.90438 0.90074 0.91230 0.91071 0.85339 0.84309 0.75571 0.76002 0.75815 0.91862 0.90614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.72 7.70 59.85 0.46 4.18 16 2 N -0.58 -13.72 2.93 -171.38 -0.50 -14.22 16 3 C -0.27 -6.92 9.59 -15.06 -0.14 -7.06 16 4 H 0.07 1.75 7.85 -52.49 -0.41 1.33 16 5 C 0.01 0.19 5.06 -17.43 -0.09 0.10 16 6 N -0.90 -25.40 10.86 55.49 0.60 -24.80 16 7 Si 0.91 21.21 29.58 -169.99 -5.03 16.18 16 8 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 C 0.17 3.16 3.42 -66.09 -0.23 2.93 16 12 H 0.08 1.42 7.93 -51.93 -0.41 1.00 16 13 C -0.15 -2.22 6.65 -24.58 -0.16 -2.38 16 14 C 0.09 0.95 6.69 -2.53 -0.02 0.93 16 15 N -0.61 -8.28 3.33 -170.51 -0.57 -8.85 16 16 C 0.51 7.10 7.86 -10.99 -0.09 7.02 16 17 O -0.51 -9.93 16.00 5.55 0.09 -9.84 16 18 C 0.10 0.86 5.93 -5.19 -0.03 0.83 16 19 N -0.29 -3.20 3.18 -63.76 -0.20 -3.40 16 20 C 0.19 1.64 12.57 -90.48 -1.14 0.51 16 21 N -0.49 -5.38 11.09 -12.36 -0.14 -5.52 16 22 C 0.13 1.79 7.96 -156.35 -1.24 0.54 16 23 C 0.62 8.54 8.10 -12.32 -0.10 8.44 16 24 N -0.83 -6.84 8.87 30.53 0.27 -6.57 16 25 O -0.52 -9.19 17.92 5.32 0.10 -9.10 16 26 N -0.21 -3.33 11.04 32.08 0.35 -2.98 16 27 C 0.09 1.51 6.41 -3.05 -0.02 1.49 16 28 H 0.03 0.89 7.32 -51.93 -0.38 0.51 16 29 H 0.04 1.07 7.43 -51.93 -0.39 0.68 16 30 H 0.00 0.08 6.30 -51.93 -0.33 -0.25 16 31 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.08 1.29 7.28 -51.93 -0.38 0.91 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.07 0.51 7.48 -51.93 -0.39 0.12 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.13 0.81 7.85 -51.93 -0.41 0.40 16 37 H 0.14 0.43 8.06 -51.93 -0.42 0.01 16 38 H 0.23 0.60 8.06 -52.48 -0.42 0.18 16 39 H 0.41 2.52 8.54 -40.82 -0.35 2.17 16 40 H 0.41 2.47 8.93 -40.82 -0.36 2.10 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.08 1.52 6.15 -51.93 -0.32 1.20 16 LS Contribution 355.99 15.07 5.36 5.36 Total: -1.00 -38.58 355.99 -7.83 -46.41 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.37 Total: -0.18 kcal Atomic # 6 Polarization: 20.31 SS G_CDS: -2.80 Total: 17.52 kcal Atomic # 7 Polarization: -66.17 SS G_CDS: -0.18 Total: -66.35 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: 0.18 Total: -18.94 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -38.58 -7.83 -46.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971564680.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.473 kcal (2) G-P(sol) polarization free energy of solvation -38.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds