Wall clock time and date at job start Fri Apr 10 2020 18:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36937 * 119.99938 * 2 1 4 4 H 1.08001 * 119.99988 * 203.48361 * 3 2 1 5 5 C 1.38809 * 120.00469 * 23.48936 * 3 2 1 6 6 N 1.31623 * 119.99651 * 15.09838 * 5 3 2 7 7 Si 1.86799 * 120.00544 * 195.10335 * 5 3 2 8 8 H 1.48496 * 109.46885 * 59.99266 * 7 5 3 9 9 H 1.48497 * 109.47127 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46789 * 299.99374 * 7 5 3 11 11 C 1.46503 * 120.00193 * 179.97438 * 2 1 3 12 12 H 1.08997 * 110.64304 * 178.31061 * 11 2 1 13 13 C 1.55153 * 110.72212 * 301.45753 * 11 2 1 14 14 C 1.54914 * 101.58278 * 154.03874 * 13 11 2 15 15 N 1.47426 * 104.83204 * 322.99104 * 14 13 11 16 16 C 1.34766 * 125.65074 * 204.09257 * 15 14 13 17 17 O 1.21285 * 120.00314 * 180.02562 * 16 15 14 18 18 C 1.50702 * 120.00177 * 0.02562 * 16 15 14 19 19 N 1.46498 * 109.47586 * 180.02562 * 18 16 15 20 20 C 1.34577 * 125.74982 * 125.00000 * 19 18 16 21 21 N 1.30874 * 107.62751 * 179.97438 * 20 19 18 22 22 C 1.34553 * 107.26629 * 0.02562 * 21 20 19 23 23 C 1.47871 * 126.04504 * 179.97438 * 22 21 20 24 24 N 1.34770 * 120.00244 * 0.02677 * 23 22 21 25 25 O 1.21557 * 119.99314 * 180.02562 * 23 22 21 26 26 N 1.28853 * 125.74312 * 304.99997 * 19 18 16 27 27 C 1.47030 * 108.70300 * 24.35580 * 15 14 13 28 28 H 1.08992 * 109.46933 * 275.21085 * 1 2 3 29 29 H 1.08996 * 109.46753 * 35.21076 * 1 2 3 30 30 H 1.09004 * 109.46504 * 155.21032 * 1 2 3 31 31 H 0.96998 * 119.99903 * 180.02562 * 6 5 3 32 32 H 1.09002 * 111.00286 * 35.96496 * 13 11 2 33 33 H 1.08999 * 111.03827 * 272.13320 * 13 11 2 34 34 H 1.08996 * 110.36408 * 204.15548 * 14 13 11 35 35 H 1.08997 * 110.45567 * 81.87313 * 14 13 11 36 36 H 1.09007 * 109.46378 * 60.00074 * 18 16 15 37 37 H 1.09005 * 109.46993 * 300.00652 * 18 16 15 38 38 H 1.08003 * 126.18996 * 0.04259 * 20 19 18 39 39 H 0.96999 * 119.99885 * 359.97438 * 24 23 22 40 40 H 0.96995 * 120.00283 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.88469 * 118.12974 * 27 15 14 42 42 H 1.08997 * 109.87925 * 239.29716 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1626 1.2247 -0.3727 5 6 1.5420 2.3383 0.4791 6 7 0.4427 2.2524 1.1979 7 14 2.2841 4.0109 0.1037 8 1 2.3290 4.2137 -1.3667 9 1 1.4514 5.0724 0.7242 10 1 3.6615 4.0762 0.6548 11 6 2.1976 -1.2687 0.0006 12 1 3.2727 -1.0917 -0.0296 13 6 1.8162 -2.1223 1.2388 14 6 2.1053 -3.5563 0.7291 15 7 1.6994 -3.5421 -0.6881 16 6 1.3360 -4.6192 -1.4119 17 8 1.0201 -4.4894 -2.5757 18 6 1.3221 -5.9851 -0.7753 19 7 0.8955 -6.9798 -1.7626 20 6 1.5768 -8.0882 -2.1070 21 7 0.8751 -8.7189 -3.0140 22 6 -0.2402 -7.9975 -3.2291 23 6 -1.3244 -8.3334 -4.1768 24 7 -1.2451 -9.4535 -4.9220 25 8 -2.2872 -7.5991 -4.2837 26 7 -0.1952 -6.9409 -2.4474 27 6 1.7627 -2.1590 -1.1828 28 1 -0.3633 0.0933 1.0234 29 1 -0.3633 0.8396 -0.5925 30 1 -0.3632 -0.9330 -0.4309 31 1 0.0178 3.0576 1.5324 32 1 0.7618 -2.0011 1.4872 33 1 2.4473 -1.8765 2.0929 34 1 1.5139 -4.2832 1.2858 35 1 3.1674 -3.7850 0.8172 36 1 0.6287 -5.9869 0.0658 37 1 2.3233 -6.2312 -0.4213 38 1 2.5298 -8.4012 -1.7066 39 1 -0.4766 -10.0393 -4.8369 40 1 -1.9565 -9.6741 -5.5434 41 1 2.4910 -2.0871 -1.9906 42 1 0.7804 -1.8469 -1.5376 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971564680.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:51 Heat of formation + Delta-G solvation = 33.487071 kcal Electronic energy + Delta-G solvation = -26802.570069 eV Core-core repulsion = 22819.972902 eV Total energy + Delta-G solvation = -3982.597167 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.49786 -41.15413 -40.31878 -38.98928 -36.58430 -35.65827 -34.63437 -33.53972 -32.83345 -31.45282 -30.19515 -28.76010 -28.08458 -25.88548 -24.97743 -23.85152 -23.32649 -21.77942 -20.99747 -20.48488 -19.29075 -18.96600 -18.58635 -18.11707 -17.61371 -17.37233 -17.32550 -16.57582 -16.27376 -15.98420 -15.68610 -15.45584 -15.12700 -15.07701 -14.90431 -14.50912 -14.28817 -13.75767 -13.65785 -13.20571 -12.98171 -12.93638 -12.86537 -12.56083 -12.41491 -12.27522 -12.09829 -11.84382 -11.68763 -11.61919 -11.54161 -11.46001 -11.19243 -10.87344 -10.65551 -10.51997 -9.71418 -8.82683 -7.85960 -5.34994 0.29937 0.98210 1.17219 1.42722 1.46006 1.49955 1.55284 1.87598 2.22976 2.31908 2.50006 3.13514 3.24639 3.30039 3.56286 3.62563 3.83521 3.89947 4.00558 4.06385 4.14865 4.28222 4.36575 4.48300 4.66379 4.75162 4.82966 4.91684 5.01346 5.10189 5.23259 5.24584 5.32550 5.41915 5.56092 5.62753 5.64499 5.73963 6.20208 6.29455 6.44656 6.94818 7.00655 7.10581 7.17344 7.81595 8.26783 9.17314 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026291 B = 0.002397 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.751273 B =11679.622726 C =12231.128133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.603 5.603 3 C -0.268 4.268 4 H 0.075 0.925 5 C -0.050 4.050 6 N -0.934 5.934 7 Si 0.967 3.033 8 H -0.285 1.285 9 H -0.297 1.297 10 H -0.269 1.269 11 C 0.165 3.835 12 H 0.087 0.913 13 C -0.146 4.146 14 C 0.102 3.898 15 N -0.606 5.606 16 C 0.504 3.496 17 O -0.580 6.580 18 C 0.109 3.891 19 N -0.294 5.294 20 C 0.217 3.783 21 N -0.497 5.497 22 C 0.109 3.891 23 C 0.616 3.384 24 N -0.804 5.804 25 O -0.574 6.574 26 N -0.272 5.272 27 C 0.099 3.901 28 H 0.014 0.986 29 H 0.007 0.993 30 H 0.020 0.980 31 H 0.248 0.752 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.155 0.845 37 H 0.207 0.793 38 H 0.290 0.710 39 H 0.423 0.577 40 H 0.421 0.579 41 H 0.055 0.945 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.230 -27.076 0.232 28.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.324 5.324 3 C -0.398 4.398 4 H 0.093 0.907 5 C -0.245 4.245 6 N -0.580 5.580 7 Si 0.795 3.205 8 H -0.211 1.211 9 H -0.223 1.223 10 H -0.194 1.194 11 C 0.057 3.943 12 H 0.105 0.895 13 C -0.186 4.186 14 C -0.019 4.019 15 N -0.340 5.340 16 C 0.291 3.709 17 O -0.459 6.459 18 C -0.013 4.013 19 N -0.089 5.089 20 C -0.078 4.078 21 N -0.223 5.223 22 C -0.171 4.171 23 C 0.397 3.603 24 N -0.370 5.370 25 O -0.450 6.450 26 N -0.112 5.112 27 C -0.026 4.026 28 H 0.032 0.968 29 H 0.026 0.974 30 H 0.038 0.962 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.110 0.890 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.172 0.828 37 H 0.224 0.776 38 H 0.305 0.695 39 H 0.256 0.744 40 H 0.255 0.745 41 H 0.073 0.927 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.970 -26.186 -0.455 27.102 hybrid contribution -0.054 1.495 -0.481 1.572 sum 6.916 -24.691 -0.936 25.658 Atomic orbital electron populations 1.20433 0.83353 0.95080 0.97756 1.44015 1.01668 1.01348 1.85389 1.19502 0.99047 0.86543 1.34687 0.90683 1.25767 0.98792 1.01850 0.98121 1.70211 1.22440 1.27853 1.37484 0.85348 0.77989 0.79591 0.77549 1.21100 1.22294 1.19430 1.21512 0.96186 0.84536 0.92107 0.89505 1.23234 1.01815 0.94571 0.98940 1.22746 1.02925 0.97803 0.78384 1.48480 1.65508 1.06074 1.13909 1.20827 0.77159 0.86744 0.86124 1.90829 1.49558 1.86301 1.19252 1.22352 1.08641 0.81756 0.88578 1.47156 1.12985 1.19486 1.29303 1.27695 1.01433 0.84300 0.94325 1.71182 1.03926 1.30087 1.17096 1.23662 0.97780 0.92586 1.03022 1.16535 0.82733 0.81806 0.79251 1.43199 1.27940 1.23465 1.42391 1.90864 1.33973 1.51701 1.68481 1.74397 1.07685 1.21318 1.07792 1.22372 1.00161 0.81582 0.98521 0.96799 0.97431 0.96159 0.94246 0.92871 0.89024 0.86784 0.86917 0.82755 0.77618 0.69470 0.74438 0.74466 0.92672 0.94478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.92 7.70 127.77 0.98 9.90 16 2 N -0.60 -28.93 2.93 -696.13 -2.04 -30.97 16 3 C -0.27 -14.16 9.59 84.03 0.81 -13.36 16 4 H 0.08 3.79 7.85 -2.91 -0.02 3.77 16 5 C -0.05 -2.72 5.06 84.86 0.43 -2.29 16 6 N -0.93 -54.41 10.86 21.65 0.24 -54.17 16 7 Si 0.97 44.31 29.58 68.60 2.03 46.34 16 8 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 9 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 10 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 11 C 0.17 5.89 3.42 46.18 0.16 6.05 16 12 H 0.09 2.96 7.93 -2.39 -0.02 2.94 16 13 C -0.15 -3.94 6.65 31.99 0.21 -3.72 16 14 C 0.10 1.57 6.69 86.86 0.58 2.15 16 15 N -0.61 -14.94 3.33 -811.75 -2.70 -17.64 16 16 C 0.50 12.82 7.86 87.66 0.69 13.51 16 17 O -0.58 -22.55 16.00 -3.04 -0.05 -22.60 16 18 C 0.11 1.24 5.93 85.63 0.51 1.75 16 19 N -0.29 -5.57 3.18 -355.63 -1.13 -6.70 16 20 C 0.22 2.67 12.57 180.30 2.27 4.94 16 21 N -0.50 -9.72 11.09 -193.03 -2.14 -11.86 16 22 C 0.11 3.01 7.96 137.13 1.09 4.10 16 23 C 0.62 17.24 8.10 86.80 0.70 17.94 16 24 N -0.80 -12.71 8.87 -175.59 -1.56 -14.27 16 25 O -0.57 -21.57 17.92 -3.89 -0.07 -21.64 16 26 N -0.27 -8.35 11.04 -52.43 -0.58 -8.93 16 27 C 0.10 3.41 6.41 86.73 0.56 3.97 16 28 H 0.01 0.74 7.32 -2.39 -0.02 0.72 16 29 H 0.01 0.39 7.43 -2.39 -0.02 0.37 16 30 H 0.02 0.91 6.30 -2.39 -0.02 0.90 16 31 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 32 H 0.05 1.71 7.28 -2.39 -0.02 1.69 16 33 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.11 0.87 7.48 -2.39 -0.02 0.86 16 35 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.15 1.04 7.85 -2.38 -0.02 1.02 16 37 H 0.21 -0.50 8.06 -2.38 -0.02 -0.52 16 38 H 0.29 -0.67 8.06 -2.91 -0.02 -0.69 16 39 H 0.42 4.57 8.54 -92.71 -0.79 3.78 16 40 H 0.42 4.82 8.93 -92.71 -0.83 3.99 16 41 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.04 1.56 6.15 -2.39 -0.01 1.54 16 Total: -1.00 -95.30 355.99 0.45 -94.85 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -0.53 Total: 2.65 kcal Atomic # 6 Polarization: 35.95 SS G_CDS: 8.98 Total: 44.93 kcal Atomic # 7 Polarization: -134.62 SS G_CDS: -9.91 Total: -144.53 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -0.12 Total: -44.24 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -95.30 0.45 -94.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971564680.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.339 kcal (2) G-P(sol) polarization free energy of solvation -95.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds