Wall clock time and date at job start Fri Apr 10 2020 18:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86792 * 119.99905 * 2 1 4 4 H 1.48498 * 109.47203 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47523 * 300.00034 * 3 2 1 6 6 H 1.48504 * 109.47048 * 60.00318 * 3 2 1 7 7 C 1.38817 * 119.99701 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99655 * 196.73100 * 7 2 1 9 9 N 1.36936 * 120.00253 * 16.72808 * 7 2 1 10 10 C 1.47162 * 121.08004 * 205.65562 * 9 7 2 11 11 C 1.53281 * 108.57693 * 231.22298 * 10 9 7 12 12 O 1.43125 * 109.21914 * 307.00264 * 11 10 9 13 13 C 1.41886 * 114.36417 * 60.89680 * 12 11 10 14 14 C 1.54370 * 110.70636 * 63.26911 * 13 12 11 15 15 C 1.54451 * 102.87347 * 83.68228 * 14 13 12 16 16 N 1.47083 * 107.29368 * 21.50101 * 15 14 13 17 17 C 1.34777 * 125.63059 * 180.95036 * 16 15 14 18 18 O 1.21278 * 120.00402 * 180.02562 * 17 16 15 19 19 C 1.50708 * 120.00118 * 0.02562 * 17 16 15 20 20 N 1.46499 * 109.47373 * 180.02562 * 19 17 16 21 21 C 1.34599 * 126.43867 * 124.97879 * 20 19 17 22 22 N 1.31069 * 106.67997 * 180.02562 * 21 20 19 23 23 N 1.28845 * 107.99001 * 0.02562 * 22 21 20 24 24 N 1.28736 * 109.39636 * 0.02562 * 23 22 21 25 25 C 1.47575 * 108.73921 * 1.21212 * 16 15 14 26 26 C 1.47335 * 121.08060 * 25.65810 * 9 7 2 27 27 H 0.96999 * 119.99855 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.61584 * 111.49508 * 10 9 7 29 29 H 1.09006 * 109.76888 * 351.03819 * 10 9 7 30 30 H 1.09000 * 109.51224 * 187.07792 * 11 10 9 31 31 H 1.09001 * 109.51332 * 66.92275 * 11 10 9 32 32 H 1.09001 * 110.73077 * 325.33829 * 14 13 12 33 33 H 1.09002 * 110.73361 * 202.03422 * 14 13 12 34 34 H 1.09005 * 109.88301 * 262.07677 * 15 14 13 35 35 H 1.09005 * 110.00450 * 140.99328 * 15 14 13 36 36 H 1.09003 * 109.46572 * 60.00139 * 19 17 16 37 37 H 1.08998 * 109.46723 * 300.00657 * 19 17 16 38 38 H 1.07998 * 126.65417 * 0.08380 * 21 20 19 39 39 H 1.09008 * 110.37282 * 95.28946 * 25 16 15 40 40 H 1.09001 * 110.37503 * 217.62802 * 25 16 15 41 41 H 1.09008 * 109.67592 * 11.09755 * 26 9 7 42 42 H 1.08998 * 109.67875 * 250.56016 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8914 2.3963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0560 -1.2221 0.2687 9 7 1.3690 -2.3629 -0.3424 10 6 1.8403 -3.6657 0.1538 11 6 1.9938 -4.6161 -1.0390 12 8 0.7710 -4.6402 -1.7825 13 6 0.3866 -3.3837 -2.3179 14 6 1.4285 -2.8849 -3.3420 15 6 1.0061 -3.6053 -4.6412 16 7 -0.4066 -3.9860 -4.4907 17 6 -1.1418 -4.6519 -5.4030 18 8 -2.3033 -4.9137 -5.1719 19 6 -0.5208 -5.0713 -6.7106 20 7 -1.5184 -5.7728 -7.5223 21 6 -1.8878 -5.4629 -8.7790 22 7 -2.7998 -6.3367 -9.1293 23 7 -2.9814 -7.1410 -8.1393 24 7 -2.2093 -6.8026 -7.1663 25 6 -0.8878 -3.5129 -3.1782 26 6 0.1849 -2.3479 -1.2189 27 1 -0.4850 0.8400 0.0004 28 1 1.1139 -4.0743 0.8563 29 1 2.8026 -3.5446 0.6514 30 1 2.2205 -5.6194 -0.6784 31 1 2.8031 -4.2674 -1.6806 32 1 2.4342 -3.1824 -3.0453 33 1 1.3645 -1.8034 -3.4620 34 1 1.6167 -4.4965 -4.7863 35 1 1.1205 -2.9351 -5.4933 36 1 0.3218 -5.7350 -6.5162 37 1 -0.1720 -4.1887 -7.2467 38 1 -1.5061 -4.6522 -9.3818 39 1 -1.3793 -2.5453 -3.2805 40 1 -1.5696 -4.2412 -2.7389 41 1 0.0696 -1.3591 -1.6631 42 1 -0.7041 -2.5962 -0.6392 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972249067.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:59 Heat of formation + Delta-G solvation = 92.532505 kcal Electronic energy + Delta-G solvation = -27954.040047 eV Core-core repulsion = 23974.003282 eV Total energy + Delta-G solvation = -3980.036764 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.33676 -40.52760 -39.04963 -36.46370 -35.57424 -34.59447 -32.64696 -31.94425 -31.39449 -29.79313 -29.49299 -27.49844 -25.80113 -24.03604 -23.91556 -23.42297 -22.78987 -21.50416 -19.83923 -19.00435 -18.08915 -17.77723 -17.17190 -16.73022 -16.32404 -16.24101 -15.69688 -15.22063 -14.98316 -14.54924 -14.49259 -14.24030 -13.60841 -13.51725 -13.17878 -13.05986 -12.84929 -12.75729 -12.44311 -12.37023 -12.25484 -11.51677 -11.38050 -11.30703 -11.20512 -11.12663 -10.99098 -10.82512 -10.59111 -10.44769 -10.37240 -10.13016 -10.05424 -9.68895 -9.21528 -8.78920 -8.66333 -6.88967 -5.97273 -3.40098 1.03938 1.57942 2.11422 2.23104 2.70642 3.23491 3.32619 3.34121 3.77385 3.96348 3.97554 4.09118 4.31142 4.36547 4.55966 4.62455 4.85252 5.00444 5.18093 5.20364 5.26310 5.36777 5.44058 5.47870 5.65900 5.71381 5.77797 5.80968 5.87215 5.96181 6.03336 6.13868 6.23402 6.33396 6.48049 6.67032 6.91265 7.24950 7.30067 7.59615 7.76816 7.80203 8.18525 8.44668 8.97504 9.60451 10.17583 11.11193 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024083 B = 0.002980 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.345942 B = 9394.581019 C = 9873.071844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.253 4.253 8 H 0.070 0.930 9 N -0.592 5.592 10 C 0.108 3.892 11 C 0.047 3.953 12 O -0.374 6.374 13 C 0.085 3.915 14 C -0.144 4.144 15 C 0.096 3.904 16 N -0.604 5.604 17 C 0.515 3.485 18 O -0.515 6.515 19 C 0.100 3.900 20 N -0.299 5.299 21 C 0.158 3.842 22 N -0.309 5.309 23 N -0.081 5.081 24 N -0.060 5.060 25 C 0.126 3.874 26 C 0.163 3.837 27 H 0.256 0.744 28 H 0.027 0.973 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.135 0.865 37 H 0.142 0.858 38 H 0.235 0.765 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.692 -5.732 -13.819 16.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.382 4.382 8 H 0.088 0.912 9 N -0.316 5.316 10 C -0.018 4.018 11 C -0.031 4.031 12 O -0.293 6.293 13 C 0.043 3.957 14 C -0.182 4.182 15 C -0.027 4.027 16 N -0.339 5.339 17 C 0.300 3.700 18 O -0.390 6.390 19 C -0.026 4.026 20 N -0.101 5.101 21 C -0.140 4.140 22 N -0.156 5.156 23 N -0.075 5.075 24 N -0.046 5.046 25 C 0.004 3.996 26 C 0.036 3.964 27 H 0.066 0.934 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.153 0.847 37 H 0.160 0.840 38 H 0.251 0.749 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.117 0.883 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 3.968 -7.047 -13.557 15.786 hybrid contribution 1.424 2.079 0.136 2.524 sum 5.392 -4.968 -13.421 15.293 Atomic orbital electron populations 1.70019 1.05219 1.25692 1.53734 1.25042 0.95340 0.98452 1.00765 0.86212 0.79288 0.83772 0.77445 1.20230 1.21469 1.21613 1.19208 0.92590 0.84276 1.42153 0.91223 1.44080 1.32644 1.01233 1.53660 1.21597 0.98752 0.87558 0.93932 1.23112 0.86174 0.99859 0.93964 1.87661 1.41528 1.29713 1.70364 1.22734 0.92198 0.86668 0.94082 1.23034 1.01025 1.01344 0.92758 1.22266 0.81129 0.99339 0.99953 1.48472 1.12438 1.55149 1.17817 1.19620 0.86620 0.79111 0.84653 1.90855 1.16109 1.54208 1.77824 1.22001 0.89409 0.99356 0.91790 1.48189 1.28831 1.21062 1.12050 1.27725 0.97278 1.02986 0.86042 1.74977 1.14344 1.03978 1.22279 1.78678 1.15902 1.19027 0.93883 1.79052 1.03638 1.00642 1.21298 1.22243 0.96432 1.00642 0.80302 1.21142 0.89517 0.96691 0.89031 0.93424 0.95495 0.91828 0.89855 0.93430 0.89234 0.89132 0.91282 0.91226 0.84723 0.84016 0.74885 0.89217 0.89423 0.88330 0.95104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.18 11.12 55.49 0.62 -23.56 16 2 C 0.00 0.07 4.96 -17.43 -0.09 -0.01 16 3 Si 0.90 19.95 29.59 -169.99 -5.03 14.92 16 4 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 6 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.25 -6.27 9.67 -15.06 -0.15 -6.41 16 8 H 0.07 1.70 7.88 -52.49 -0.41 1.28 16 9 N -0.59 -13.33 2.98 -172.24 -0.51 -13.84 16 10 C 0.11 2.05 6.71 -3.53 -0.02 2.03 16 11 C 0.05 0.73 6.78 37.30 0.25 0.99 16 12 O -0.37 -6.47 10.29 -35.22 -0.36 -6.84 16 13 C 0.09 1.42 0.84 -89.55 -0.08 1.34 16 14 C -0.14 -1.94 5.86 -25.25 -0.15 -2.09 16 15 C 0.10 0.92 6.50 -2.96 -0.02 0.90 16 16 N -0.60 -7.48 3.33 -170.64 -0.57 -8.05 16 17 C 0.52 6.43 7.87 -10.98 -0.09 6.34 16 18 O -0.52 -9.03 15.96 5.56 0.09 -8.94 16 19 C 0.10 0.71 6.16 -5.19 -0.03 0.68 16 20 N -0.30 -3.13 3.19 -63.73 -0.20 -3.34 16 21 C 0.16 1.37 12.79 -90.39 -1.16 0.21 16 22 N -0.31 -4.03 12.36 29.59 0.37 -3.66 16 23 N -0.08 -1.26 13.43 60.35 0.81 -0.45 16 24 N -0.06 -0.89 12.28 60.35 0.74 -0.15 16 25 C 0.13 1.94 6.09 -2.77 -0.02 1.92 16 26 C 0.16 3.45 4.07 -3.91 -0.02 3.43 16 27 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.05 0.70 6.22 -51.93 -0.32 0.38 16 32 H 0.09 1.22 6.07 -51.93 -0.32 0.91 16 33 H 0.09 1.30 7.83 -51.93 -0.41 0.90 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.14 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.14 0.32 8.08 -51.93 -0.42 -0.10 16 38 H 0.24 0.58 8.06 -52.49 -0.42 0.15 16 39 H 0.09 1.36 8.00 -51.92 -0.42 0.95 16 40 H 0.09 1.50 8.05 -51.93 -0.42 1.08 16 41 H 0.10 2.28 5.94 -51.92 -0.31 1.97 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 345.41 15.07 5.21 5.21 Total: -1.00 -35.05 345.41 -5.93 -40.98 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -5.53 Total: -1.62 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: -1.55 Total: 9.33 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: 1.25 Total: -53.04 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.27 Total: -15.77 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.92 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.05 -5.93 -40.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972249067.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.510 kcal (2) G-P(sol) polarization free energy of solvation -35.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds