Wall clock time and date at job start Fri Apr 10 2020 18:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86792 * 119.99905 * 2 1 4 4 H 1.48498 * 109.47203 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47523 * 300.00034 * 3 2 1 6 6 H 1.48504 * 109.47048 * 60.00318 * 3 2 1 7 7 C 1.38817 * 119.99701 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99655 * 196.73100 * 7 2 1 9 9 N 1.36936 * 120.00253 * 16.72808 * 7 2 1 10 10 C 1.47162 * 121.08004 * 205.65562 * 9 7 2 11 11 C 1.53281 * 108.57693 * 231.22298 * 10 9 7 12 12 O 1.43125 * 109.21914 * 307.00264 * 11 10 9 13 13 C 1.41886 * 114.36417 * 60.89680 * 12 11 10 14 14 C 1.54370 * 110.70636 * 63.26911 * 13 12 11 15 15 C 1.54451 * 102.87347 * 83.68228 * 14 13 12 16 16 N 1.47083 * 107.29368 * 21.50101 * 15 14 13 17 17 C 1.34777 * 125.63059 * 180.95036 * 16 15 14 18 18 O 1.21278 * 120.00402 * 180.02562 * 17 16 15 19 19 C 1.50708 * 120.00118 * 0.02562 * 17 16 15 20 20 N 1.46499 * 109.47373 * 180.02562 * 19 17 16 21 21 C 1.34599 * 126.43867 * 124.97879 * 20 19 17 22 22 N 1.31069 * 106.67997 * 180.02562 * 21 20 19 23 23 N 1.28845 * 107.99001 * 0.02562 * 22 21 20 24 24 N 1.28736 * 109.39636 * 0.02562 * 23 22 21 25 25 C 1.47575 * 108.73921 * 1.21212 * 16 15 14 26 26 C 1.47335 * 121.08060 * 25.65810 * 9 7 2 27 27 H 0.96999 * 119.99855 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.61584 * 111.49508 * 10 9 7 29 29 H 1.09006 * 109.76888 * 351.03819 * 10 9 7 30 30 H 1.09000 * 109.51224 * 187.07792 * 11 10 9 31 31 H 1.09001 * 109.51332 * 66.92275 * 11 10 9 32 32 H 1.09001 * 110.73077 * 325.33829 * 14 13 12 33 33 H 1.09002 * 110.73361 * 202.03422 * 14 13 12 34 34 H 1.09005 * 109.88301 * 262.07677 * 15 14 13 35 35 H 1.09005 * 110.00450 * 140.99328 * 15 14 13 36 36 H 1.09003 * 109.46572 * 60.00139 * 19 17 16 37 37 H 1.08998 * 109.46723 * 300.00657 * 19 17 16 38 38 H 1.07998 * 126.65417 * 0.08380 * 21 20 19 39 39 H 1.09008 * 110.37282 * 95.28946 * 25 16 15 40 40 H 1.09001 * 110.37503 * 217.62802 * 25 16 15 41 41 H 1.09008 * 109.67592 * 11.09755 * 26 9 7 42 42 H 1.08998 * 109.67875 * 250.56016 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8914 2.3963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0560 -1.2221 0.2687 9 7 1.3690 -2.3629 -0.3424 10 6 1.8403 -3.6657 0.1538 11 6 1.9938 -4.6161 -1.0390 12 8 0.7710 -4.6402 -1.7825 13 6 0.3866 -3.3837 -2.3179 14 6 1.4285 -2.8849 -3.3420 15 6 1.0061 -3.6053 -4.6412 16 7 -0.4066 -3.9860 -4.4907 17 6 -1.1418 -4.6519 -5.4030 18 8 -2.3033 -4.9137 -5.1719 19 6 -0.5208 -5.0713 -6.7106 20 7 -1.5184 -5.7728 -7.5223 21 6 -1.8878 -5.4629 -8.7790 22 7 -2.7998 -6.3367 -9.1293 23 7 -2.9814 -7.1410 -8.1393 24 7 -2.2093 -6.8026 -7.1663 25 6 -0.8878 -3.5129 -3.1782 26 6 0.1849 -2.3479 -1.2189 27 1 -0.4850 0.8400 0.0004 28 1 1.1139 -4.0743 0.8563 29 1 2.8026 -3.5446 0.6514 30 1 2.2205 -5.6194 -0.6784 31 1 2.8031 -4.2674 -1.6806 32 1 2.4342 -3.1824 -3.0453 33 1 1.3645 -1.8034 -3.4620 34 1 1.6167 -4.4965 -4.7863 35 1 1.1205 -2.9351 -5.4933 36 1 0.3218 -5.7350 -6.5162 37 1 -0.1720 -4.1887 -7.2467 38 1 -1.5061 -4.6522 -9.3818 39 1 -1.3793 -2.5453 -3.2805 40 1 -1.5696 -4.2412 -2.7389 41 1 0.0696 -1.3591 -1.6631 42 1 -0.7041 -2.5962 -0.6392 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972249067.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:58 Heat of formation + Delta-G solvation = 65.718088 kcal Electronic energy + Delta-G solvation = -27955.202807 eV Core-core repulsion = 23974.003282 eV Total energy + Delta-G solvation = -3981.199525 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.16023 -41.65209 -40.25001 -37.64568 -36.41864 -36.26102 -33.52206 -33.27102 -33.05902 -30.87404 -30.38095 -28.98792 -27.27907 -25.30977 -24.85292 -24.54405 -23.79938 -22.97579 -20.83099 -20.33931 -18.92086 -18.86894 -18.60570 -17.66116 -17.55748 -17.01543 -16.85978 -16.55498 -16.15514 -15.97375 -15.75638 -15.40572 -15.13929 -14.73458 -14.54345 -14.26422 -14.01101 -13.76712 -13.61873 -13.45243 -13.13172 -13.08291 -12.83028 -12.65632 -12.47547 -12.23421 -12.18105 -12.10382 -12.08920 -11.88323 -11.81889 -11.48357 -11.15278 -11.05723 -10.76751 -10.46858 -9.77470 -8.73290 -7.89067 -5.35240 0.27037 0.95289 1.26645 1.35850 1.47462 1.51122 1.60446 1.82056 2.49132 2.71894 3.08711 3.24779 3.39785 3.48759 3.52564 3.59889 3.91533 3.97244 4.00305 4.04327 4.25107 4.32057 4.37930 4.39346 4.49383 4.58356 4.67065 4.71358 4.72247 4.78908 4.91714 4.99062 5.05529 5.14537 5.19602 5.24772 5.28093 5.52039 5.63533 6.29609 6.34559 6.42203 6.89062 7.07308 7.58707 7.75854 8.30596 9.17348 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024083 B = 0.002980 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.345942 B = 9394.581019 C = 9873.071844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.050 4.050 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.301 1.301 7 C -0.255 4.255 8 H 0.076 0.924 9 N -0.608 5.608 10 C 0.100 3.900 11 C 0.055 3.945 12 O -0.384 6.384 13 C 0.091 3.909 14 C -0.139 4.139 15 C 0.101 3.899 16 N -0.602 5.602 17 C 0.510 3.490 18 O -0.578 6.578 19 C 0.105 3.895 20 N -0.300 5.300 21 C 0.186 3.814 22 N -0.347 5.347 23 N -0.119 5.119 24 N -0.100 5.100 25 C 0.129 3.871 26 C 0.173 3.827 27 H 0.250 0.750 28 H 0.007 0.993 29 H 0.075 0.925 30 H 0.114 0.886 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.118 0.882 36 H 0.168 0.832 37 H 0.207 0.793 38 H 0.299 0.701 39 H 0.081 0.919 40 H 0.058 0.942 41 H 0.074 0.926 42 H -0.016 1.016 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.282 -5.443 -16.782 19.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.245 4.245 3 Si 0.795 3.205 4 H -0.186 1.186 5 H -0.214 1.214 6 H -0.229 1.229 7 C -0.384 4.384 8 H 0.094 0.906 9 N -0.332 5.332 10 C -0.025 4.025 11 C -0.022 4.022 12 O -0.303 6.303 13 C 0.049 3.951 14 C -0.177 4.177 15 C -0.020 4.020 16 N -0.335 5.335 17 C 0.297 3.703 18 O -0.457 6.457 19 C -0.018 4.018 20 N -0.102 5.102 21 C -0.111 4.111 22 N -0.195 5.195 23 N -0.113 5.113 24 N -0.087 5.087 25 C 0.006 3.994 26 C 0.047 3.953 27 H 0.059 0.941 28 H 0.025 0.975 29 H 0.093 0.907 30 H 0.132 0.868 31 H 0.086 0.914 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.136 0.864 36 H 0.186 0.814 37 H 0.224 0.776 38 H 0.313 0.687 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.002 0.998 Dipole moment (debyes) X Y Z Total from point charges 7.624 -6.783 -16.531 19.427 hybrid contribution 0.334 2.027 1.186 2.372 sum 7.958 -4.756 -15.345 17.928 Atomic orbital electron populations 1.70196 1.06758 1.25855 1.55661 1.25774 0.95942 1.01463 1.01315 0.85212 0.78802 0.79821 0.76625 1.18646 1.21358 1.22859 1.19547 0.92917 0.85150 1.40811 0.90639 1.44349 1.32557 1.02044 1.54269 1.21805 0.98472 0.86765 0.95457 1.23155 0.86068 1.00490 0.92509 1.87661 1.42511 1.29626 1.70543 1.22419 0.94264 0.85195 0.93237 1.22940 0.99980 1.01069 0.93717 1.22496 0.79214 1.01278 0.99018 1.48476 1.13681 1.55002 1.16321 1.20606 0.85894 0.77684 0.86083 1.90844 1.19098 1.56437 1.79327 1.22487 0.88282 1.02144 0.88894 1.48432 1.28730 1.20160 1.12909 1.28838 0.94641 1.02252 0.85374 1.74871 1.16629 1.05375 1.22579 1.78642 1.17188 1.20711 0.94783 1.78969 1.04909 1.02857 1.21954 1.21902 0.95486 0.99584 0.82459 1.20877 0.87656 0.97054 0.89734 0.94106 0.97500 0.90690 0.86835 0.91399 0.88737 0.90361 0.88067 0.86437 0.81443 0.77597 0.68651 0.90050 0.92342 0.90747 0.99765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.45 11.12 21.65 0.24 -52.21 16 2 C -0.05 -2.56 4.96 84.86 0.42 -2.14 16 3 Si 0.97 41.28 29.59 68.60 2.03 43.31 16 4 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 5 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.30 -13.33 7.11 99.48 0.71 -12.63 16 7 C -0.25 -12.67 9.67 84.03 0.81 -11.86 16 8 H 0.08 3.61 7.88 -2.91 -0.02 3.59 16 9 N -0.61 -27.86 2.98 -698.85 -2.08 -29.94 16 10 C 0.10 3.80 6.71 86.35 0.58 4.38 16 11 C 0.05 1.60 6.78 72.08 0.49 2.09 16 12 O -0.38 -12.93 10.29 -148.95 -1.53 -14.47 16 13 C 0.09 3.01 0.84 -10.10 -0.01 3.00 16 14 C -0.14 -3.38 5.86 31.55 0.18 -3.20 16 15 C 0.10 1.41 6.50 86.76 0.56 1.97 16 16 N -0.60 -13.32 3.33 -812.16 -2.71 -16.03 16 17 C 0.51 11.41 7.87 87.66 0.69 12.10 16 18 O -0.58 -20.36 15.96 -3.02 -0.05 -20.40 16 19 C 0.11 0.91 6.16 85.64 0.53 1.44 16 20 N -0.30 -5.27 3.19 -355.55 -1.14 -6.40 16 21 C 0.19 2.47 12.79 180.27 2.31 4.78 16 22 N -0.35 -8.56 12.36 -60.30 -0.75 -9.30 16 23 N -0.12 -3.72 13.43 37.01 0.50 -3.22 16 24 N -0.10 -2.89 12.28 37.02 0.45 -2.44 16 25 C 0.13 4.09 6.09 86.62 0.53 4.62 16 26 C 0.17 7.72 4.07 86.01 0.35 8.07 16 27 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 28 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.07 2.62 7.96 -2.38 -0.02 2.60 16 30 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.07 1.75 6.22 -2.39 -0.01 1.73 16 32 H 0.09 2.22 6.07 -2.39 -0.01 2.20 16 33 H 0.08 2.11 7.83 -2.39 -0.02 2.09 16 34 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.12 0.66 8.14 -2.38 -0.02 0.64 16 36 H 0.17 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.21 -0.88 8.08 -2.39 -0.02 -0.90 16 38 H 0.30 -0.61 8.06 -2.91 -0.02 -0.63 16 39 H 0.08 2.65 8.00 -2.38 -0.02 2.63 16 40 H 0.06 2.16 8.05 -2.39 -0.02 2.14 16 41 H 0.07 3.65 5.94 -2.38 -0.01 3.64 16 42 H -0.02 -0.82 8.14 -2.39 -0.02 -0.84 16 Total: -1.00 -87.08 345.41 3.46 -83.62 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: 1.05 Total: 2.23 kcal Atomic # 6 Polarization: 17.82 SS G_CDS: 7.44 Total: 25.26 kcal Atomic # 7 Polarization: -114.07 SS G_CDS: -5.48 Total: -119.55 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -1.58 Total: -34.87 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -87.08 3.46 -83.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972249067.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.340 kcal (2) G-P(sol) polarization free energy of solvation -87.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds