Wall clock time and date at job start Fri Apr 10 2020 18:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00160 * 2 1 4 4 H 1.48503 * 109.47032 * 272.01484 * 3 2 1 5 5 H 1.48499 * 109.47087 * 32.01607 * 3 2 1 6 6 H 1.48499 * 109.46908 * 152.01197 * 3 2 1 7 7 C 1.38811 * 119.99539 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00462 * 339.43619 * 7 2 1 9 9 N 1.36933 * 119.99918 * 159.44492 * 7 2 1 10 10 C 1.47168 * 121.07730 * 333.70104 * 9 7 2 11 11 C 1.53281 * 108.56122 * 231.20304 * 10 9 7 12 12 O 1.43118 * 109.22617 * 306.99868 * 11 10 9 13 13 C 1.41883 * 114.37239 * 60.90165 * 12 11 10 14 14 C 1.54354 * 110.75667 * 176.65710 * 13 12 11 15 15 C 1.54463 * 102.87495 * 276.33312 * 14 13 12 16 16 N 1.47085 * 107.29429 * 338.50990 * 15 14 13 17 17 C 1.34781 * 125.62603 * 178.98914 * 16 15 14 18 18 O 1.21285 * 119.99989 * 179.97438 * 17 16 15 19 19 C 1.50699 * 120.00270 * 0.02562 * 17 16 15 20 20 N 1.46493 * 109.47497 * 179.97438 * 19 17 16 21 21 C 1.34605 * 126.43985 * 124.70501 * 20 19 17 22 22 N 1.31068 * 106.67697 * 179.87647 * 21 20 19 23 23 N 1.28845 * 107.99369 * 0.39367 * 22 21 20 24 24 N 1.28737 * 109.39377 * 359.74837 * 23 22 21 25 25 C 1.47563 * 108.74311 * 358.99485 * 16 15 14 26 26 C 1.47334 * 121.07971 * 153.67340 * 9 7 2 27 27 H 0.97003 * 120.00168 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.62401 * 111.48127 * 10 9 7 29 29 H 1.08996 * 109.77300 * 351.01462 * 10 9 7 30 30 H 1.09006 * 109.50598 * 187.07206 * 11 10 9 31 31 H 1.08997 * 109.50962 * 66.92736 * 11 10 9 32 32 H 1.09001 * 110.73083 * 34.68525 * 14 13 12 33 33 H 1.09004 * 110.73183 * 157.98358 * 14 13 12 34 34 H 1.09005 * 109.87789 * 97.93527 * 15 14 13 35 35 H 1.08996 * 109.87621 * 218.93425 * 15 14 13 36 36 H 1.09008 * 109.46818 * 299.99563 * 19 17 16 37 37 H 1.08999 * 109.47450 * 59.99058 * 19 17 16 38 38 H 1.08000 * 126.65914 * 0.02676 * 21 20 19 39 39 H 1.09001 * 110.37951 * 264.49856 * 25 16 15 40 40 H 1.09001 * 110.37962 * 142.14667 * 25 16 15 41 41 H 1.09000 * 109.67417 * 11.11757 * 26 9 7 42 42 H 1.09001 * 109.67809 * 250.57338 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4551 2.0710 -1.3992 5 1 1.4697 2.6399 0.7423 6 1 3.5684 1.4281 0.6570 7 6 2.0101 -1.2022 -0.0005 8 1 1.5218 -2.1079 0.3276 9 7 3.3141 -1.2398 -0.4169 10 6 3.8366 -0.2464 -1.3687 11 6 4.5323 -0.9883 -2.5155 12 8 5.4970 -1.8958 -1.9731 13 6 4.9504 -2.8927 -1.1243 14 6 6.0469 -3.8723 -0.6544 15 6 6.1392 -4.8737 -1.8268 16 7 4.8727 -4.7943 -2.5704 17 6 4.5664 -5.5003 -3.6769 18 8 3.4867 -5.3543 -4.2098 19 6 5.5649 -6.4720 -4.2512 20 7 4.9974 -7.1085 -5.4424 21 6 5.5441 -7.1347 -6.6721 22 7 4.7170 -7.8045 -7.4372 23 7 3.7107 -8.1634 -6.7171 24 7 3.8769 -7.7445 -5.5112 25 6 3.9929 -3.8141 -1.9051 26 6 4.2396 -2.2758 0.0739 27 1 -0.4850 0.8401 -0.0004 28 1 4.5529 0.4022 -0.8645 29 1 3.0162 0.3522 -1.7645 30 1 5.0332 -0.2689 -3.1635 31 1 3.7925 -1.5445 -3.0911 32 1 6.9948 -3.3524 -0.5152 33 1 5.7450 -4.3784 0.2626 34 1 6.9698 -4.6047 -2.4795 35 1 6.2828 -5.8831 -1.4414 36 1 6.4759 -5.9386 -4.5230 37 1 5.7984 -7.2347 -3.5084 38 1 6.4831 -6.6921 -6.9699 39 1 3.3105 -4.3192 -1.2215 40 1 3.4346 -3.2412 -2.6455 41 1 3.6802 -3.0458 0.6052 42 1 4.9725 -1.8258 0.7436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972249069.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:02 Heat of formation + Delta-G solvation = 99.305119 kcal Electronic energy + Delta-G solvation = -28095.908005 eV Core-core repulsion = 24116.164924 eV Total energy + Delta-G solvation = -3979.743082 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.35349 -40.71772 -39.17113 -36.67657 -35.61565 -34.76572 -32.69994 -32.38187 -31.59253 -29.82295 -29.58004 -27.92905 -26.05460 -24.10697 -23.99228 -23.46603 -23.04308 -21.50914 -20.05643 -19.28690 -18.13642 -17.88281 -17.07385 -16.94435 -16.52850 -16.17534 -15.92780 -15.61884 -15.12507 -14.66682 -14.51454 -14.30360 -14.17712 -13.69326 -13.55638 -13.13027 -12.89273 -12.60226 -12.55055 -12.32518 -12.21555 -11.90576 -11.80773 -11.54365 -11.39127 -11.32821 -11.27458 -11.07520 -10.60778 -10.48908 -10.40599 -10.11914 -9.84371 -9.63612 -9.55647 -8.84213 -8.66783 -7.14844 -6.06365 -3.45160 1.01422 1.55554 2.10332 2.18880 2.62899 3.21072 3.39175 3.40867 3.68749 3.83123 3.95087 3.97467 4.28074 4.36846 4.40468 4.47923 4.53584 4.80155 4.83488 5.03835 5.18595 5.20524 5.24420 5.42128 5.45672 5.56261 5.62823 5.70999 5.75239 5.76184 5.81510 5.92989 6.02493 6.07246 6.14899 6.30477 6.34138 6.54681 7.16893 7.48336 7.73287 7.76089 8.18104 8.43149 8.74142 9.56215 9.90344 11.08891 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020817 B = 0.003258 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.704933 B = 8591.859198 C = 9153.564983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.026 3.974 3 Si 0.883 3.117 4 H -0.288 1.288 5 H -0.301 1.301 6 H -0.270 1.270 7 C -0.266 4.266 8 H 0.089 0.911 9 N -0.606 5.606 10 C 0.090 3.910 11 C 0.044 3.956 12 O -0.369 6.369 13 C 0.092 3.908 14 C -0.116 4.116 15 C 0.097 3.903 16 N -0.608 5.608 17 C 0.513 3.487 18 O -0.508 6.508 19 C 0.101 3.899 20 N -0.300 5.300 21 C 0.159 3.841 22 N -0.308 5.308 23 N -0.079 5.079 24 N -0.060 5.060 25 C 0.095 3.905 26 C 0.134 3.866 27 H 0.265 0.735 28 H 0.036 0.964 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.142 0.858 37 H 0.135 0.865 38 H 0.235 0.765 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.393 -10.673 -4.577 23.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.173 4.173 3 Si 0.713 3.287 4 H -0.216 1.216 5 H -0.229 1.229 6 H -0.195 1.195 7 C -0.393 4.393 8 H 0.106 0.894 9 N -0.331 5.331 10 C -0.035 4.035 11 C -0.034 4.034 12 O -0.288 6.288 13 C 0.050 3.950 14 C -0.154 4.154 15 C -0.025 4.025 16 N -0.343 5.343 17 C 0.297 3.703 18 O -0.382 6.382 19 C -0.025 4.025 20 N -0.103 5.103 21 C -0.140 4.140 22 N -0.155 5.155 23 N -0.073 5.073 24 N -0.047 5.047 25 C -0.027 4.027 26 C 0.007 3.993 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.160 0.840 37 H 0.152 0.848 38 H 0.251 0.749 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.094 0.906 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 18.591 -11.276 -5.236 22.365 hybrid contribution 1.081 1.783 0.421 2.127 sum 19.672 -9.493 -4.814 22.367 Atomic orbital electron populations 1.69829 1.05697 1.26765 1.52154 1.25252 0.95219 0.97627 0.99229 0.86980 0.79952 0.84640 0.77104 1.21569 1.22944 1.19549 1.18863 0.84281 0.94991 1.41193 0.89364 1.44405 1.08585 1.31674 1.48469 1.22011 0.97897 0.92748 0.90892 1.23175 0.91983 0.92064 0.96130 1.87637 1.34079 1.42518 1.64591 1.22381 0.92821 0.87825 0.91982 1.22562 1.00301 0.95195 0.97367 1.22191 0.86129 1.00031 0.94195 1.48456 1.18058 1.41505 1.26238 1.19669 0.88101 0.81814 0.80675 1.90892 1.23148 1.65081 1.59115 1.21983 0.97043 0.97681 0.85767 1.48187 1.14778 1.36499 1.10798 1.27728 1.03081 1.01877 0.81292 1.74983 1.00437 1.13677 1.26404 1.78688 1.16341 1.17422 0.94867 1.79048 1.00277 1.07979 1.17365 1.22830 0.93096 0.89501 0.97259 1.21342 0.92861 0.92738 0.92347 0.92549 0.94662 0.89941 0.89331 0.92710 0.88683 0.88700 0.90881 0.90936 0.84031 0.84777 0.74884 0.89830 0.89134 0.90596 0.94382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.02 13.97 55.49 0.78 -26.24 16 2 C 0.03 0.74 5.25 -17.43 -0.09 0.65 16 3 Si 0.88 21.53 24.31 -169.99 -4.13 17.40 16 4 H -0.29 -6.75 6.58 56.52 0.37 -6.38 16 5 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 6 H -0.27 -6.45 6.60 56.52 0.37 -6.08 16 7 C -0.27 -7.04 10.11 -15.06 -0.15 -7.19 16 8 H 0.09 2.50 8.06 -52.49 -0.42 2.07 16 9 N -0.61 -13.38 2.77 -172.24 -0.48 -13.85 16 10 C 0.09 1.85 4.37 -3.53 -0.02 1.83 16 11 C 0.04 0.75 6.78 37.30 0.25 1.00 16 12 O -0.37 -5.73 10.28 -35.22 -0.36 -6.10 16 13 C 0.09 1.30 0.83 -89.65 -0.07 1.22 16 14 C -0.12 -1.03 6.12 -25.25 -0.15 -1.19 16 15 C 0.10 0.68 6.50 -2.96 -0.02 0.66 16 16 N -0.61 -6.90 3.33 -170.76 -0.57 -7.47 16 17 C 0.51 6.23 7.87 -10.98 -0.09 6.14 16 18 O -0.51 -9.16 15.96 5.55 0.09 -9.07 16 19 C 0.10 0.65 6.16 -5.20 -0.03 0.62 16 20 N -0.30 -3.08 3.19 -63.74 -0.20 -3.29 16 21 C 0.16 1.37 12.79 -90.39 -1.16 0.21 16 22 N -0.31 -4.04 12.36 29.59 0.37 -3.67 16 23 N -0.08 -1.24 13.43 60.35 0.81 -0.43 16 24 N -0.06 -0.89 12.28 60.35 0.74 -0.15 16 25 C 0.09 1.43 5.85 -2.87 -0.02 1.41 16 26 C 0.13 2.30 5.40 -3.91 -0.02 2.28 16 27 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.04 0.72 6.95 -51.93 -0.36 0.36 16 29 H 0.08 1.86 4.60 -51.93 -0.24 1.62 16 30 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.05 0.99 6.25 -51.93 -0.32 0.67 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 0.71 8.00 -51.93 -0.42 0.29 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.14 0.25 8.08 -51.92 -0.42 -0.17 16 37 H 0.13 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.24 0.56 8.06 -52.49 -0.42 0.14 16 39 H 0.08 1.32 7.82 -51.93 -0.41 0.92 16 40 H 0.09 1.69 6.00 -51.93 -0.31 1.37 16 41 H 0.08 1.26 7.71 -51.93 -0.40 0.86 16 42 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 338.90 15.07 5.11 5.11 Total: -1.00 -38.21 338.90 -4.88 -43.08 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -5.45 Total: -2.98 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: -1.57 Total: 7.65 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: 1.44 Total: -55.10 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.27 Total: -15.16 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.13 Total: 17.40 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -38.21 -4.88 -43.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972249069.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.388 kcal (2) G-P(sol) polarization free energy of solvation -38.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds