Wall clock time and date at job start Fri Apr 10 2020 18:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00160 * 2 1 4 4 H 1.48503 * 109.47032 * 272.01484 * 3 2 1 5 5 H 1.48499 * 109.47087 * 32.01607 * 3 2 1 6 6 H 1.48499 * 109.46908 * 152.01197 * 3 2 1 7 7 C 1.38811 * 119.99539 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00462 * 339.43619 * 7 2 1 9 9 N 1.36933 * 119.99918 * 159.44492 * 7 2 1 10 10 C 1.47168 * 121.07730 * 333.70104 * 9 7 2 11 11 C 1.53281 * 108.56122 * 231.20304 * 10 9 7 12 12 O 1.43118 * 109.22617 * 306.99868 * 11 10 9 13 13 C 1.41883 * 114.37239 * 60.90165 * 12 11 10 14 14 C 1.54354 * 110.75667 * 176.65710 * 13 12 11 15 15 C 1.54463 * 102.87495 * 276.33312 * 14 13 12 16 16 N 1.47085 * 107.29429 * 338.50990 * 15 14 13 17 17 C 1.34781 * 125.62603 * 178.98914 * 16 15 14 18 18 O 1.21285 * 119.99989 * 179.97438 * 17 16 15 19 19 C 1.50699 * 120.00270 * 0.02562 * 17 16 15 20 20 N 1.46493 * 109.47497 * 179.97438 * 19 17 16 21 21 C 1.34605 * 126.43985 * 124.70501 * 20 19 17 22 22 N 1.31068 * 106.67697 * 179.87647 * 21 20 19 23 23 N 1.28845 * 107.99369 * 0.39367 * 22 21 20 24 24 N 1.28737 * 109.39377 * 359.74837 * 23 22 21 25 25 C 1.47563 * 108.74311 * 358.99485 * 16 15 14 26 26 C 1.47334 * 121.07971 * 153.67340 * 9 7 2 27 27 H 0.97003 * 120.00168 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.62401 * 111.48127 * 10 9 7 29 29 H 1.08996 * 109.77300 * 351.01462 * 10 9 7 30 30 H 1.09006 * 109.50598 * 187.07206 * 11 10 9 31 31 H 1.08997 * 109.50962 * 66.92736 * 11 10 9 32 32 H 1.09001 * 110.73083 * 34.68525 * 14 13 12 33 33 H 1.09004 * 110.73183 * 157.98358 * 14 13 12 34 34 H 1.09005 * 109.87789 * 97.93527 * 15 14 13 35 35 H 1.08996 * 109.87621 * 218.93425 * 15 14 13 36 36 H 1.09008 * 109.46818 * 299.99563 * 19 17 16 37 37 H 1.08999 * 109.47450 * 59.99058 * 19 17 16 38 38 H 1.08000 * 126.65914 * 0.02676 * 21 20 19 39 39 H 1.09001 * 110.37951 * 264.49856 * 25 16 15 40 40 H 1.09001 * 110.37962 * 142.14667 * 25 16 15 41 41 H 1.09000 * 109.67417 * 11.11757 * 26 9 7 42 42 H 1.09001 * 109.67809 * 250.57338 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4551 2.0710 -1.3992 5 1 1.4697 2.6399 0.7423 6 1 3.5684 1.4281 0.6570 7 6 2.0101 -1.2022 -0.0005 8 1 1.5218 -2.1079 0.3276 9 7 3.3141 -1.2398 -0.4169 10 6 3.8366 -0.2464 -1.3687 11 6 4.5323 -0.9883 -2.5155 12 8 5.4970 -1.8958 -1.9731 13 6 4.9504 -2.8927 -1.1243 14 6 6.0469 -3.8723 -0.6544 15 6 6.1392 -4.8737 -1.8268 16 7 4.8727 -4.7943 -2.5704 17 6 4.5664 -5.5003 -3.6769 18 8 3.4867 -5.3543 -4.2098 19 6 5.5649 -6.4720 -4.2512 20 7 4.9974 -7.1085 -5.4424 21 6 5.5441 -7.1347 -6.6721 22 7 4.7170 -7.8045 -7.4372 23 7 3.7107 -8.1634 -6.7171 24 7 3.8769 -7.7445 -5.5112 25 6 3.9929 -3.8141 -1.9051 26 6 4.2396 -2.2758 0.0739 27 1 -0.4850 0.8401 -0.0004 28 1 4.5529 0.4022 -0.8645 29 1 3.0162 0.3522 -1.7645 30 1 5.0332 -0.2689 -3.1635 31 1 3.7925 -1.5445 -3.0911 32 1 6.9948 -3.3524 -0.5152 33 1 5.7450 -4.3784 0.2626 34 1 6.9698 -4.6047 -2.4795 35 1 6.2828 -5.8831 -1.4414 36 1 6.4759 -5.9386 -4.5230 37 1 5.7984 -7.2347 -3.5084 38 1 6.4831 -6.6921 -6.9699 39 1 3.3105 -4.3192 -1.2215 40 1 3.4346 -3.2412 -2.6455 41 1 3.6802 -3.0458 0.6052 42 1 4.9725 -1.8258 0.7436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972249069.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:01 Heat of formation + Delta-G solvation = 67.338360 kcal Electronic energy + Delta-G solvation = -28097.294188 eV Core-core repulsion = 24116.164924 eV Total energy + Delta-G solvation = -3981.129265 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.17890 -41.75994 -40.30192 -37.81422 -36.44789 -36.36252 -33.81590 -33.53230 -33.28974 -30.67540 -30.55643 -29.32018 -27.49191 -25.15631 -24.96577 -24.79936 -24.01970 -22.84081 -21.01692 -20.49565 -19.03484 -18.85488 -18.64834 -17.87454 -17.54143 -17.40893 -16.91131 -16.84844 -16.05747 -15.98469 -15.89470 -15.66203 -15.49472 -14.93116 -14.48715 -14.36571 -13.99332 -13.93541 -13.69793 -13.54909 -13.41331 -13.14589 -13.13941 -12.72344 -12.49663 -12.32321 -12.22605 -12.16313 -12.10210 -12.07450 -11.63163 -11.49908 -11.34389 -11.11069 -11.04034 -10.54579 -9.75109 -8.99419 -8.22230 -5.56096 0.24804 0.95455 1.24775 1.25172 1.35083 1.37302 1.46468 1.81525 2.35960 2.61531 2.92045 3.08675 3.19726 3.42685 3.48970 3.56226 3.66417 3.89804 3.97294 3.98823 4.07901 4.12910 4.32868 4.36000 4.37442 4.47627 4.55351 4.61224 4.69969 4.72859 4.77232 4.84229 4.87114 4.95198 5.05519 5.18257 5.21732 5.24185 5.74385 6.04852 6.19095 6.35471 6.78303 6.90510 7.50789 7.56630 7.90474 8.97336 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020817 B = 0.003258 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.704933 B = 8591.859198 C = 9153.564983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.037 4.037 3 Si 0.950 3.050 4 H -0.274 1.274 5 H -0.312 1.312 6 H -0.256 1.256 7 C -0.249 4.249 8 H 0.052 0.948 9 N -0.623 5.623 10 C 0.084 3.916 11 C 0.055 3.945 12 O -0.358 6.358 13 C 0.093 3.907 14 C -0.108 4.108 15 C 0.092 3.908 16 N -0.604 5.604 17 C 0.503 3.497 18 O -0.584 6.584 19 C 0.107 3.893 20 N -0.300 5.300 21 C 0.186 3.814 22 N -0.347 5.347 23 N -0.120 5.120 24 N -0.100 5.100 25 C 0.097 3.903 26 C 0.127 3.873 27 H 0.262 0.738 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.122 0.878 31 H 0.033 0.967 32 H 0.118 0.882 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.206 0.794 37 H 0.174 0.826 38 H 0.299 0.701 39 H 0.061 0.939 40 H 0.043 0.957 41 H 0.071 0.929 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.544 -11.034 -4.647 29.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.232 4.232 3 Si 0.779 3.221 4 H -0.201 1.201 5 H -0.241 1.241 6 H -0.180 1.180 7 C -0.378 4.378 8 H 0.070 0.930 9 N -0.349 5.349 10 C -0.041 4.041 11 C -0.023 4.023 12 O -0.276 6.276 13 C 0.051 3.949 14 C -0.146 4.146 15 C -0.028 4.028 16 N -0.337 5.337 17 C 0.291 3.709 18 O -0.463 6.463 19 C -0.016 4.016 20 N -0.103 5.103 21 C -0.112 4.112 22 N -0.195 5.195 23 N -0.114 5.114 24 N -0.087 5.087 25 C -0.026 4.026 26 C 0.002 3.998 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.140 0.860 31 H 0.052 0.948 32 H 0.136 0.864 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.133 0.867 36 H 0.223 0.777 37 H 0.191 0.809 38 H 0.314 0.686 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.090 0.910 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 24.857 -11.666 -5.282 27.962 hybrid contribution -0.789 1.833 0.498 2.057 sum 24.068 -9.833 -4.784 26.436 Atomic orbital electron populations 1.69982 1.07589 1.27343 1.55405 1.25931 0.95826 1.01271 1.00192 0.85881 0.78750 0.79856 0.77651 1.20077 1.24070 1.18008 1.18784 0.86374 0.93575 1.39061 0.92992 1.44511 1.07874 1.33177 1.49345 1.22079 0.97401 0.92818 0.91777 1.23003 0.92070 0.92395 0.94801 1.87657 1.33138 1.42319 1.64493 1.22410 0.94563 0.87834 0.90096 1.22691 0.98959 0.94087 0.98829 1.22628 0.84521 1.01931 0.93698 1.48521 1.18875 1.40084 1.26224 1.20751 0.88249 0.81861 0.80035 1.90875 1.26679 1.67481 1.61307 1.22508 0.96181 0.97438 0.85493 1.48458 1.13707 1.35721 1.12404 1.28844 1.03504 0.99035 0.79774 1.74865 1.01106 1.15710 1.27803 1.78649 1.18045 1.19095 0.95645 1.78959 1.02759 1.09560 1.17455 1.22463 0.93772 0.90390 0.96011 1.21606 0.92377 0.91534 0.94274 0.92913 0.93570 0.92483 0.86040 0.94843 0.86384 0.87220 0.87173 0.86665 0.77722 0.80860 0.68608 0.92080 0.93865 0.91043 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.53 13.97 21.65 0.30 -60.22 16 2 C -0.04 -2.17 5.25 84.86 0.45 -1.72 16 3 Si 0.95 45.60 24.31 68.60 1.67 47.27 16 4 H -0.27 -12.39 6.58 99.48 0.65 -11.74 16 5 H -0.31 -15.36 7.11 99.48 0.71 -14.65 16 6 H -0.26 -11.51 6.60 99.48 0.66 -10.85 16 7 C -0.25 -13.82 10.11 84.03 0.85 -12.97 16 8 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 9 N -0.62 -27.83 2.77 -698.86 -1.93 -29.76 16 10 C 0.08 3.39 4.37 86.35 0.38 3.77 16 11 C 0.06 1.79 6.78 72.08 0.49 2.28 16 12 O -0.36 -9.95 10.28 -148.95 -1.53 -11.48 16 13 C 0.09 2.40 0.83 -10.16 -0.01 2.40 16 14 C -0.11 -1.36 6.12 31.55 0.19 -1.16 16 15 C 0.09 0.71 6.50 86.77 0.56 1.27 16 16 N -0.60 -12.01 3.33 -812.54 -2.71 -14.71 16 17 C 0.50 11.15 7.87 87.66 0.69 11.84 16 18 O -0.58 -21.71 15.96 -3.04 -0.05 -21.76 16 19 C 0.11 0.82 6.16 85.63 0.53 1.34 16 20 N -0.30 -5.27 3.19 -355.57 -1.14 -6.41 16 21 C 0.19 2.51 12.79 180.27 2.31 4.82 16 22 N -0.35 -8.76 12.36 -60.29 -0.74 -9.51 16 23 N -0.12 -3.85 13.43 37.01 0.50 -3.35 16 24 N -0.10 -2.95 12.28 37.02 0.45 -2.50 16 25 C 0.10 2.95 5.85 86.56 0.51 3.46 16 26 C 0.13 4.26 5.40 86.01 0.46 4.72 16 27 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 28 H 0.05 1.77 6.95 -2.39 -0.02 1.76 16 29 H 0.06 2.58 4.60 -2.39 -0.01 2.57 16 30 H 0.12 3.13 8.14 -2.38 -0.02 3.11 16 31 H 0.03 1.24 6.25 -2.39 -0.01 1.22 16 32 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.11 1.10 8.00 -2.39 -0.02 1.08 16 34 H 0.11 0.16 8.14 -2.38 -0.02 0.14 16 35 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 36 H 0.21 -1.05 8.08 -2.38 -0.02 -1.06 16 37 H 0.17 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.30 -0.58 8.06 -2.91 -0.02 -0.61 16 39 H 0.06 2.07 7.82 -2.39 -0.02 2.05 16 40 H 0.04 1.72 6.00 -2.39 -0.01 1.70 16 41 H 0.07 2.41 7.71 -2.39 -0.02 2.39 16 42 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -97.55 338.90 3.18 -94.38 By element: Atomic # 1 Polarization: -2.94 SS G_CDS: 0.95 Total: -1.99 kcal Atomic # 6 Polarization: 12.63 SS G_CDS: 7.40 Total: 20.04 kcal Atomic # 7 Polarization: -121.19 SS G_CDS: -5.27 Total: -126.46 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -1.58 Total: -33.24 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.67 Total: 47.27 kcal Total: -97.55 3.18 -94.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972249069.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.714 kcal (2) G-P(sol) polarization free energy of solvation -97.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds