Wall clock time and date at job start Fri Apr 10 2020 18:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 120.00253 * 2 1 4 4 H 1.48500 * 109.46893 * 269.99642 * 3 2 1 5 5 H 1.48501 * 109.46828 * 29.99289 * 3 2 1 6 6 H 1.48494 * 109.47211 * 149.99321 * 3 2 1 7 7 C 1.38812 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00423 * 170.56781 * 7 2 1 9 9 N 1.36939 * 120.00138 * 350.58009 * 7 2 1 10 10 C 1.48144 * 127.84417 * 164.33397 * 9 7 2 11 11 C 1.57688 * 104.67656 * 139.76932 * 10 9 7 12 12 H 1.08999 * 120.32558 * 244.64529 * 11 10 9 13 13 C 1.53005 * 116.10784 * 87.30882 * 11 10 9 14 14 H 1.08999 * 117.40651 * 16.95807 * 13 11 10 15 15 C 1.52998 * 117.43786 * 161.63881 * 13 11 10 16 16 N 1.46500 * 109.46927 * 244.23771 * 15 13 11 17 17 C 1.34778 * 119.99952 * 180.02562 * 16 15 13 18 18 O 1.21599 * 119.99913 * 359.97438 * 17 16 15 19 19 C 1.47433 * 120.00388 * 180.02562 * 17 16 15 20 20 C 1.41297 * 126.40957 * 0.02562 * 19 17 16 21 21 N 1.30443 * 108.02226 * 180.02562 * 20 19 17 22 22 N 1.39939 * 108.89481 * 0.02562 * 21 20 19 23 23 C 1.46501 * 125.75109 * 179.97438 * 22 21 20 24 24 C 1.53001 * 109.47118 * 305.02256 * 23 22 21 25 25 F 1.39901 * 109.47455 * 180.02562 * 24 23 22 26 26 C 1.34253 * 108.49326 * 0.22510 * 22 21 20 27 27 C 1.53000 * 60.55839 * 269.28673 * 13 11 10 28 28 H 1.09003 * 119.54426 * 248.23558 * 27 13 11 29 29 C 1.48152 * 127.83354 * 344.32839 * 9 7 2 30 30 H 0.97002 * 120.00164 * 0.02562 * 1 2 3 31 31 H 1.08999 * 110.40562 * 259.19774 * 10 9 7 32 32 H 1.09001 * 110.40447 * 21.50766 * 10 9 7 33 33 H 1.09007 * 109.46986 * 124.24500 * 15 13 11 34 34 H 1.08994 * 109.47783 * 4.24297 * 15 13 11 35 35 H 0.97000 * 120.00112 * 0.02562 * 16 15 13 36 36 H 1.08003 * 125.98574 * 0.02562 * 20 19 17 37 37 H 1.08996 * 109.47708 * 65.01936 * 23 22 21 38 38 H 1.09003 * 109.47067 * 185.02483 * 23 22 21 39 39 H 1.09005 * 109.47127 * 299.99817 * 24 23 22 40 40 H 1.08997 * 109.47516 * 59.99735 * 24 23 22 41 41 H 1.08005 * 126.29237 * 179.74962 * 26 22 21 42 42 H 1.08996 * 110.40463 * 100.80370 * 29 9 7 43 43 H 1.08997 * 110.40889 * 338.37707 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0793 -1.2086 -0.1527 9 7 1.3394 -2.3800 0.1952 10 6 1.8184 -3.7548 -0.0792 11 6 1.2960 -4.6103 1.1380 12 1 2.0011 -5.0727 1.8287 13 6 -0.1131 -5.1899 0.9982 14 1 -0.5439 -5.2255 -0.0024 15 6 -0.4933 -6.3494 1.9211 16 7 -0.7428 -7.5499 1.1195 17 6 -1.0954 -8.7021 1.7233 18 8 -1.2061 -8.7452 2.9335 19 6 -1.3459 -9.9106 0.9168 20 6 -1.2559 -10.0138 -0.4896 21 7 -1.5509 -11.2396 -0.8240 22 7 -1.8401 -11.9685 0.3351 23 6 -2.2175 -13.3831 0.3848 24 6 -3.4302 -13.6194 -0.5176 25 9 -3.7911 -14.9702 -0.4698 26 6 -1.7186 -11.1513 1.3934 27 6 0.0734 -3.8122 1.6370 28 1 -0.1320 -3.6801 2.6993 29 6 -0.0300 -2.5685 0.7281 30 1 -0.4850 0.8400 -0.0004 31 1 1.4044 -4.1211 -1.0186 32 1 2.9077 -3.7786 -0.1099 33 1 -1.3942 -6.0904 2.4776 34 1 0.3220 -6.5411 2.6186 35 1 -0.6542 -7.5157 0.1542 36 1 -0.9896 -9.2173 -1.1686 37 1 -1.3835 -13.9942 0.0398 38 1 -2.4686 -13.6564 1.4097 39 1 -4.2644 -13.0085 -0.1726 40 1 -3.1793 -13.3461 -1.5425 41 1 -1.8804 -11.4165 2.4278 42 1 -0.7327 -2.7496 -0.0853 43 1 -0.3352 -1.6979 1.3084 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978416582.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:15 Heat of formation + Delta-G solvation = 50.666612 kcal Electronic energy + Delta-G solvation = -25473.277107 eV Core-core repulsion = 21471.504940 eV Total energy + Delta-G solvation = -4001.772167 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.155 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.34314 -41.80226 -39.43203 -38.48561 -34.96574 -34.73470 -33.30280 -31.02307 -30.79531 -29.71305 -27.29985 -26.94010 -25.06220 -24.27752 -22.85408 -21.32932 -20.99344 -20.52988 -19.75667 -19.25370 -18.33193 -17.08528 -16.87824 -16.74201 -16.15157 -15.92777 -15.63670 -15.37173 -14.91161 -14.75206 -14.45008 -14.26815 -13.92713 -13.49646 -13.44758 -13.23340 -12.99876 -12.73963 -12.63244 -12.18937 -11.85381 -11.71974 -11.34924 -11.23192 -11.08113 -10.82251 -10.62288 -10.26957 -10.12804 -10.08321 -10.04488 -9.73678 -9.41550 -9.19278 -9.12159 -8.85572 -8.62819 -6.87084 -5.80640 -3.14611 1.12324 1.71064 1.81571 3.17617 3.32080 3.37671 3.43416 3.45483 3.55739 3.89304 4.17022 4.22703 4.28764 4.34578 4.46014 4.50629 4.67136 4.80852 4.93562 4.97758 5.13441 5.28827 5.34143 5.41849 5.46410 5.53712 5.79291 5.81967 5.93635 5.94993 6.00634 6.24281 6.27769 6.39728 6.56101 6.66843 6.71352 6.91307 7.05219 7.35845 7.52311 7.52982 7.71531 8.20442 8.22060 9.10452 9.73443 10.50580 11.33785 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.038053 B = 0.001770 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.643127 B =15819.769476 C =16087.232515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.227 4.227 8 H 0.076 0.924 9 N -0.595 5.595 10 C 0.156 3.844 11 C -0.172 4.172 12 H 0.107 0.893 13 C -0.153 4.153 14 H 0.103 0.897 15 C 0.156 3.844 16 N -0.718 5.718 17 C 0.592 3.408 18 O -0.554 6.554 19 C -0.287 4.287 20 C 0.089 3.911 21 N -0.297 5.297 22 N -0.367 5.367 23 C 0.102 3.898 24 C 0.053 3.947 25 F -0.207 7.207 26 C 0.131 3.869 27 C -0.162 4.162 28 H 0.102 0.898 29 C 0.184 3.816 30 H 0.254 0.746 31 H 0.027 0.973 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.400 0.600 36 H 0.194 0.806 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.190 0.810 42 H 0.024 0.976 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.847 -26.605 0.669 27.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.094 0.906 9 N -0.318 5.318 10 C 0.029 3.971 11 C -0.192 4.192 12 H 0.125 0.875 13 C -0.172 4.172 14 H 0.121 0.879 15 C 0.033 3.967 16 N -0.369 5.369 17 C 0.380 3.620 18 O -0.433 6.433 19 C -0.302 4.302 20 C -0.100 4.100 21 N -0.116 5.116 22 N -0.146 5.146 23 C -0.020 4.020 24 C -0.003 4.003 25 F -0.188 7.188 26 C -0.019 4.019 27 C -0.183 4.183 28 H 0.120 0.880 29 C 0.058 3.942 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.235 0.765 36 H 0.211 0.789 37 H 0.120 0.880 38 H 0.130 0.870 39 H 0.101 0.899 40 H 0.111 0.889 41 H 0.207 0.793 42 H 0.042 0.958 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.115 -27.321 0.543 28.002 hybrid contribution 0.548 1.343 0.252 1.473 sum -5.567 -25.978 0.795 26.579 Atomic orbital electron populations 1.69896 1.05067 1.25437 1.55741 1.24892 0.95632 0.97976 1.01763 0.86127 0.78761 0.83262 0.77637 1.21466 1.21541 1.20563 1.18983 0.90857 0.82404 1.43309 0.90613 1.45148 1.13740 0.99968 1.72915 1.21713 0.97092 0.85863 0.92424 1.24714 0.89729 1.02264 1.02459 0.87516 1.22552 1.00467 0.94022 1.00159 0.87911 1.20874 1.01021 0.82060 0.92712 1.45790 1.70244 1.09914 1.10947 1.17179 0.76231 0.81982 0.86656 1.90776 1.53301 1.85227 1.13981 1.20326 1.20553 0.95543 0.93747 1.24178 0.96583 0.94816 0.94388 1.77181 1.22803 1.05351 1.06290 1.48267 1.52244 1.09420 1.04678 1.22324 0.99086 0.77271 1.03292 1.22162 0.97161 0.78383 1.02612 1.92810 1.92961 1.35070 1.97935 1.23011 0.95320 0.89384 0.94220 1.24177 1.02301 0.91634 1.00182 0.88028 1.21075 0.86869 0.92777 0.93477 0.93554 0.95564 0.93371 0.91101 0.91414 0.76513 0.78930 0.87993 0.86979 0.89895 0.88890 0.79290 0.95843 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.58 10.88 55.49 0.60 -25.98 16 2 C -0.01 -0.15 5.40 -17.43 -0.09 -0.25 16 3 Si 0.91 21.78 29.56 -169.99 -5.03 16.75 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.23 -6.29 10.35 -15.06 -0.16 -6.44 16 8 H 0.08 2.02 7.85 -52.49 -0.41 1.61 16 9 N -0.59 -15.03 3.38 -166.73 -0.56 -15.59 16 10 C 0.16 3.17 7.10 -0.57 0.00 3.17 16 11 C -0.17 -2.93 7.03 -87.38 -0.61 -3.54 16 12 H 0.11 1.69 8.12 -51.93 -0.42 1.26 16 13 C -0.15 -2.25 5.34 -90.62 -0.48 -2.74 16 14 H 0.10 1.49 8.04 -51.93 -0.42 1.07 16 15 C 0.16 2.05 5.95 -4.04 -0.02 2.03 16 16 N -0.72 -8.04 5.55 -61.38 -0.34 -8.39 16 17 C 0.59 7.32 7.81 -12.52 -0.10 7.23 16 18 O -0.55 -8.78 16.90 5.28 0.09 -8.69 16 19 C -0.29 -2.80 6.13 -105.06 -0.64 -3.44 16 20 C 0.09 0.74 11.50 -16.98 -0.20 0.55 16 21 N -0.30 -2.65 12.33 30.86 0.38 -2.27 16 22 N -0.37 -2.62 3.65 -60.81 -0.22 -2.84 16 23 C 0.10 0.41 6.94 -4.04 -0.03 0.38 16 24 C 0.05 0.24 7.73 37.16 0.29 0.53 16 25 F -0.21 -1.33 17.36 2.25 0.04 -1.29 16 26 C 0.13 1.04 11.25 -16.57 -0.19 0.85 16 27 C -0.16 -2.99 6.77 -89.22 -0.60 -3.60 16 28 H 0.10 1.79 8.14 -51.93 -0.42 1.36 16 29 C 0.18 4.33 5.70 -2.41 -0.01 4.31 16 30 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.98 8.14 -51.92 -0.42 0.55 16 34 H 0.07 0.94 7.94 -51.93 -0.41 0.52 16 35 H 0.40 3.51 7.36 -40.82 -0.30 3.21 16 36 H 0.19 1.07 7.50 -52.48 -0.39 0.68 16 37 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.11 0.20 8.06 -51.93 -0.42 -0.22 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.19 1.09 8.06 -52.48 -0.42 0.66 16 42 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.09 2.36 6.53 -51.93 -0.34 2.02 16 LS Contribution 368.82 15.07 5.56 5.56 Total: -1.00 -34.22 368.82 -8.39 -42.61 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -6.05 Total: 1.09 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -2.86 Total: -0.97 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -0.14 Total: -55.06 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.09 Total: -8.69 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.22 -8.39 -42.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978416582.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.278 kcal (2) G-P(sol) polarization free energy of solvation -34.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds