Wall clock time and date at job start Fri Apr 10 2020 18:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 120.00253 * 2 1 4 4 H 1.48500 * 109.46893 * 269.99642 * 3 2 1 5 5 H 1.48501 * 109.46828 * 29.99289 * 3 2 1 6 6 H 1.48494 * 109.47211 * 149.99321 * 3 2 1 7 7 C 1.38812 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00423 * 170.56781 * 7 2 1 9 9 N 1.36939 * 120.00138 * 350.58009 * 7 2 1 10 10 C 1.48144 * 127.84417 * 164.33397 * 9 7 2 11 11 C 1.57688 * 104.67656 * 139.76932 * 10 9 7 12 12 H 1.08999 * 120.32558 * 244.64529 * 11 10 9 13 13 C 1.53005 * 116.10784 * 87.30882 * 11 10 9 14 14 H 1.08999 * 117.40651 * 16.95807 * 13 11 10 15 15 C 1.52998 * 117.43786 * 161.63881 * 13 11 10 16 16 N 1.46500 * 109.46927 * 244.23771 * 15 13 11 17 17 C 1.34778 * 119.99952 * 180.02562 * 16 15 13 18 18 O 1.21599 * 119.99913 * 359.97438 * 17 16 15 19 19 C 1.47433 * 120.00388 * 180.02562 * 17 16 15 20 20 C 1.41297 * 126.40957 * 0.02562 * 19 17 16 21 21 N 1.30443 * 108.02226 * 180.02562 * 20 19 17 22 22 N 1.39939 * 108.89481 * 0.02562 * 21 20 19 23 23 C 1.46501 * 125.75109 * 179.97438 * 22 21 20 24 24 C 1.53001 * 109.47118 * 305.02256 * 23 22 21 25 25 F 1.39901 * 109.47455 * 180.02562 * 24 23 22 26 26 C 1.34253 * 108.49326 * 0.22510 * 22 21 20 27 27 C 1.53000 * 60.55839 * 269.28673 * 13 11 10 28 28 H 1.09003 * 119.54426 * 248.23558 * 27 13 11 29 29 C 1.48152 * 127.83354 * 344.32839 * 9 7 2 30 30 H 0.97002 * 120.00164 * 0.02562 * 1 2 3 31 31 H 1.08999 * 110.40562 * 259.19774 * 10 9 7 32 32 H 1.09001 * 110.40447 * 21.50766 * 10 9 7 33 33 H 1.09007 * 109.46986 * 124.24500 * 15 13 11 34 34 H 1.08994 * 109.47783 * 4.24297 * 15 13 11 35 35 H 0.97000 * 120.00112 * 0.02562 * 16 15 13 36 36 H 1.08003 * 125.98574 * 0.02562 * 20 19 17 37 37 H 1.08996 * 109.47708 * 65.01936 * 23 22 21 38 38 H 1.09003 * 109.47067 * 185.02483 * 23 22 21 39 39 H 1.09005 * 109.47127 * 299.99817 * 24 23 22 40 40 H 1.08997 * 109.47516 * 59.99735 * 24 23 22 41 41 H 1.08005 * 126.29237 * 179.74962 * 26 22 21 42 42 H 1.08996 * 110.40463 * 100.80370 * 29 9 7 43 43 H 1.08997 * 110.40889 * 338.37707 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0793 -1.2086 -0.1527 9 7 1.3394 -2.3800 0.1952 10 6 1.8184 -3.7548 -0.0792 11 6 1.2960 -4.6103 1.1380 12 1 2.0011 -5.0727 1.8287 13 6 -0.1131 -5.1899 0.9982 14 1 -0.5439 -5.2255 -0.0024 15 6 -0.4933 -6.3494 1.9211 16 7 -0.7428 -7.5499 1.1195 17 6 -1.0954 -8.7021 1.7233 18 8 -1.2061 -8.7452 2.9335 19 6 -1.3459 -9.9106 0.9168 20 6 -1.2559 -10.0138 -0.4896 21 7 -1.5509 -11.2396 -0.8240 22 7 -1.8401 -11.9685 0.3351 23 6 -2.2175 -13.3831 0.3848 24 6 -3.4302 -13.6194 -0.5176 25 9 -3.7911 -14.9702 -0.4698 26 6 -1.7186 -11.1513 1.3934 27 6 0.0734 -3.8122 1.6370 28 1 -0.1320 -3.6801 2.6993 29 6 -0.0300 -2.5685 0.7281 30 1 -0.4850 0.8400 -0.0004 31 1 1.4044 -4.1211 -1.0186 32 1 2.9077 -3.7786 -0.1099 33 1 -1.3942 -6.0904 2.4776 34 1 0.3220 -6.5411 2.6186 35 1 -0.6542 -7.5157 0.1542 36 1 -0.9896 -9.2173 -1.1686 37 1 -1.3835 -13.9942 0.0398 38 1 -2.4686 -13.6564 1.4097 39 1 -4.2644 -13.0085 -0.1726 40 1 -3.1793 -13.3461 -1.5425 41 1 -1.8804 -11.4165 2.4278 42 1 -0.7327 -2.7496 -0.0853 43 1 -0.3352 -1.6979 1.3084 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978416582.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:14 Heat of formation + Delta-G solvation = 28.386857 kcal Electronic energy + Delta-G solvation = -25474.243230 eV Core-core repulsion = 21471.504940 eV Total energy + Delta-G solvation = -4002.738290 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.155 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.78079 -42.41440 -40.60167 -39.80044 -36.27624 -35.30972 -34.83858 -32.70866 -31.52674 -30.40396 -28.81585 -28.50198 -26.64125 -24.78778 -23.73648 -22.70452 -21.84457 -21.64305 -20.89258 -20.69223 -19.06372 -18.77211 -17.51971 -17.43017 -17.00757 -16.72921 -16.64059 -16.27057 -16.14498 -15.84803 -15.50240 -15.25665 -15.00427 -14.79591 -14.56345 -14.34190 -14.11685 -13.88894 -13.68119 -13.31846 -13.15520 -12.84825 -12.68251 -12.63418 -12.29681 -12.23000 -11.93282 -11.86229 -11.81067 -11.72694 -11.07129 -10.87378 -10.66640 -10.64650 -10.51190 -10.08853 -9.65962 -8.88208 -7.90585 -5.26138 0.48988 1.14233 1.22454 1.47198 1.48820 1.58181 2.25312 2.47965 2.49251 2.81698 3.15783 3.28298 3.58108 3.66880 3.74057 3.75048 3.79032 3.91073 3.98570 4.09615 4.17800 4.23917 4.26062 4.32277 4.37059 4.52318 4.60418 4.68025 4.76364 4.77111 4.85333 4.96693 5.05419 5.26981 5.37237 5.38741 5.47048 5.54582 5.56682 5.69445 5.76611 6.20051 6.44689 6.67323 7.03006 7.32367 7.70561 8.48984 9.23278 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.038053 B = 0.001770 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.643127 B =15819.769476 C =16087.232515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.063 4.063 3 Si 0.979 3.021 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.241 4.241 8 H 0.080 0.920 9 N -0.621 5.621 10 C 0.149 3.851 11 C -0.158 4.158 12 H 0.129 0.871 13 C -0.111 4.111 14 H 0.111 0.889 15 C 0.166 3.834 16 N -0.711 5.711 17 C 0.594 3.406 18 O -0.594 6.594 19 C -0.311 4.311 20 C 0.092 3.908 21 N -0.319 5.319 22 N -0.361 5.361 23 C 0.098 3.902 24 C 0.056 3.944 25 F -0.217 7.217 26 C 0.140 3.860 27 C -0.179 4.179 28 H 0.111 0.889 29 C 0.189 3.811 30 H 0.249 0.751 31 H 0.033 0.967 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.414 0.586 36 H 0.215 0.785 37 H 0.110 0.890 38 H 0.139 0.861 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.210 0.790 42 H 0.003 0.997 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.252 -28.647 0.785 29.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.257 4.257 3 Si 0.806 3.194 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.369 4.369 8 H 0.098 0.902 9 N -0.345 5.345 10 C 0.024 3.976 11 C -0.178 4.178 12 H 0.146 0.854 13 C -0.130 4.130 14 H 0.129 0.871 15 C 0.042 3.958 16 N -0.362 5.362 17 C 0.383 3.617 18 O -0.476 6.476 19 C -0.326 4.326 20 C -0.096 4.096 21 N -0.139 5.139 22 N -0.139 5.139 23 C -0.022 4.022 24 C 0.000 4.000 25 F -0.198 7.198 26 C -0.012 4.012 27 C -0.200 4.200 28 H 0.129 0.871 29 C 0.064 3.936 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.251 0.749 36 H 0.232 0.768 37 H 0.128 0.872 38 H 0.157 0.843 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.227 0.773 42 H 0.021 0.979 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.504 -29.416 0.614 29.932 hybrid contribution 0.344 1.869 0.172 1.908 sum -5.160 -27.547 0.786 28.037 Atomic orbital electron populations 1.70090 1.06494 1.25698 1.57183 1.25722 0.96484 1.01245 1.02206 0.85090 0.77730 0.78968 0.77572 1.21059 1.21988 1.19413 1.19370 0.91383 0.83752 1.42427 0.90228 1.45464 1.14288 1.01220 1.73539 1.21881 0.97600 0.84134 0.94026 1.24639 0.90430 1.01769 1.00923 0.85365 1.22438 0.98121 0.92149 1.00295 0.87131 1.20649 1.00845 0.82016 0.92284 1.45639 1.69885 1.09117 1.11538 1.17471 0.75290 0.82601 0.86291 1.90754 1.55242 1.85875 1.15716 1.20202 1.22944 0.95263 0.94227 1.24526 0.95723 0.95198 0.94149 1.77160 1.23565 1.05758 1.07377 1.48466 1.51227 1.10213 1.04037 1.22577 0.99066 0.75705 1.04888 1.22143 0.97628 0.77710 1.02504 1.92789 1.93087 1.35976 1.97967 1.23354 0.93716 0.88938 0.95169 1.23862 1.04925 0.91312 0.99853 0.87144 1.20807 0.86036 0.93710 0.93084 0.94155 0.94965 0.92793 0.91427 0.91441 0.74941 0.76834 0.87219 0.84266 0.89360 0.89517 0.77333 0.97891 0.93144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.81 10.88 21.65 0.24 -56.57 16 2 C -0.06 -3.57 5.40 84.86 0.46 -3.11 16 3 Si 0.98 45.40 29.56 68.60 2.03 47.43 16 4 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.24 -13.46 10.35 84.03 0.87 -12.59 16 8 H 0.08 4.26 7.85 -2.91 -0.02 4.23 16 9 N -0.62 -31.75 3.38 -681.43 -2.30 -34.06 16 10 C 0.15 5.91 7.10 87.72 0.62 6.54 16 11 C -0.16 -5.06 7.03 -8.69 -0.06 -5.12 16 12 H 0.13 3.63 8.12 -2.39 -0.02 3.61 16 13 C -0.11 -3.03 5.34 -10.79 -0.06 -3.09 16 14 H 0.11 2.93 8.04 -2.39 -0.02 2.91 16 15 C 0.17 3.96 5.95 86.38 0.51 4.48 16 16 N -0.71 -14.25 5.55 -466.37 -2.59 -16.83 16 17 C 0.59 13.63 7.81 86.67 0.68 14.30 16 18 O -0.59 -18.06 16.90 -4.03 -0.07 -18.12 16 19 C -0.31 -5.45 6.13 -20.15 -0.12 -5.57 16 20 C 0.09 1.34 11.50 85.65 0.99 2.33 16 21 N -0.32 -5.07 12.33 -56.27 -0.69 -5.76 16 22 N -0.36 -4.31 3.65 -346.30 -1.26 -5.58 16 23 C 0.10 0.55 6.94 86.38 0.60 1.15 16 24 C 0.06 0.41 7.73 71.98 0.56 0.97 16 25 F -0.22 -2.48 17.36 44.97 0.78 -1.70 16 26 C 0.14 1.89 11.25 84.28 0.95 2.84 16 27 C -0.18 -6.48 6.77 -9.88 -0.07 -6.55 16 28 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 29 C 0.19 9.16 5.70 86.53 0.49 9.65 16 30 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 31 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.07 1.68 7.94 -2.39 -0.02 1.67 16 35 H 0.41 6.07 7.36 -92.71 -0.68 5.39 16 36 H 0.22 1.84 7.50 -2.91 -0.02 1.81 16 37 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.14 0.04 8.06 -2.39 -0.02 0.02 16 39 H 0.09 0.56 8.14 -2.38 -0.02 0.55 16 40 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.21 1.85 8.06 -2.91 -0.02 1.82 16 42 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 43 H 0.05 2.80 6.53 -2.39 -0.02 2.79 16 Total: -1.00 -75.53 368.82 2.89 -72.63 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.35 Total: 12.33 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 6.41 Total: 6.24 kcal Atomic # 7 Polarization: -112.19 SS G_CDS: -6.61 Total: -118.80 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.07 Total: -18.12 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.78 Total: -1.70 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -75.53 2.89 -72.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978416582.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.019 kcal (2) G-P(sol) polarization free energy of solvation -75.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds