Wall clock time and date at job start Fri Apr 10 2020 18:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.99699 * 2 1 4 4 C 1.54328 * 109.98868 * 238.96720 * 2 1 3 5 5 H 1.08998 * 110.67099 * 337.03941 * 4 2 1 6 6 N 1.46499 * 110.85315 * 100.19622 * 4 2 1 7 7 C 1.36942 * 119.99770 * 200.14206 * 6 4 2 8 8 H 1.07991 * 119.99945 * 0.02562 * 7 6 4 9 9 C 1.38816 * 119.99415 * 179.97438 * 7 6 4 10 10 N 1.31615 * 120.00358 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99696 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47141 * 89.99887 * 11 9 7 13 13 H 1.48498 * 109.46874 * 210.00313 * 11 9 7 14 14 H 1.48500 * 109.46739 * 330.00099 * 11 9 7 15 15 C 1.55167 * 103.01976 * 218.66411 * 4 2 1 16 16 C 1.54910 * 101.57828 * 35.30301 * 15 4 2 17 17 N 1.47021 * 109.88378 * 121.09623 * 2 1 3 18 18 C 1.34778 * 125.64868 * 298.39585 * 17 2 1 19 19 O 1.21283 * 120.00087 * 359.71569 * 18 17 2 20 20 C 1.50699 * 119.99954 * 179.71619 * 18 17 2 21 21 N 1.46500 * 109.47329 * 179.97438 * 20 18 17 22 22 C 1.34582 * 125.75077 * 124.99502 * 21 20 18 23 23 N 1.30867 * 107.62678 * 180.02562 * 22 21 20 24 24 C 1.34553 * 107.27030 * 0.02562 * 23 22 21 25 25 C 1.47864 * 126.04966 * 179.97438 * 24 23 22 26 26 N 1.34784 * 120.00042 * 0.02562 * 25 24 23 27 27 O 1.21552 * 120.00186 * 180.02562 * 25 24 23 28 28 N 1.28859 * 125.74612 * 305.31917 * 21 20 18 29 29 H 1.09008 * 109.46782 * 300.35481 * 1 2 3 30 30 H 1.08991 * 109.47322 * 60.35480 * 1 2 3 31 31 H 1.08997 * 109.47118 * 180.36047 * 1 2 3 32 32 H 0.97000 * 119.99993 * 20.14577 * 6 4 2 33 33 H 0.97001 * 120.00363 * 179.97438 * 10 9 7 34 34 H 1.08996 * 111.00046 * 277.23096 * 15 4 2 35 35 H 1.08996 * 111.03720 * 153.38997 * 15 4 2 36 36 H 1.09004 * 110.36692 * 204.15315 * 16 15 4 37 37 H 1.09005 * 110.36603 * 81.83289 * 16 15 4 38 38 H 1.09001 * 109.46920 * 59.99914 * 20 18 17 39 39 H 1.09000 * 109.47060 * 300.00191 * 20 18 17 40 40 H 1.08000 * 126.18595 * 0.03277 * 22 21 20 41 41 H 0.97000 * 119.99339 * 359.97438 * 26 25 24 42 42 H 0.96995 * 120.00015 * 179.72533 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7477 -1.2427 5 1 1.3067 -1.4404 -1.6225 6 7 2.4636 0.1969 -2.2863 7 6 2.5654 -0.2212 -3.5864 8 1 2.3459 -1.2472 -3.8423 9 6 2.9496 0.6740 -4.5752 10 7 3.2165 1.9245 -4.2633 11 14 3.0877 0.1039 -6.3488 12 1 1.7830 0.2924 -7.0324 13 1 4.1308 0.8995 -7.0446 14 1 3.4593 -1.3336 -6.3790 15 6 3.2864 -1.5183 -0.6916 16 6 2.8100 -1.8824 0.7368 17 7 2.0301 -0.7141 1.1839 18 6 1.8074 -0.3621 2.4657 19 8 1.1475 0.6237 2.7180 20 6 2.3785 -1.1934 3.5854 21 7 1.9985 -0.6061 4.8726 22 6 1.3610 -1.2450 5.8709 23 7 1.1994 -0.3906 6.8489 24 6 1.7378 0.7770 6.4522 25 6 1.7822 2.0272 7.2406 26 7 1.2508 2.0623 8.4788 27 8 2.2980 3.0232 6.7722 28 7 2.2130 0.6111 5.2374 29 1 -0.3633 0.5194 0.8869 30 1 -0.3633 0.5083 -0.8931 31 1 -0.3633 -1.0276 0.0065 32 1 2.6604 1.1185 -2.0564 33 1 3.4854 2.5500 -4.9543 34 1 4.1669 -0.8768 -0.6580 35 1 3.4813 -2.4155 -1.2790 36 1 3.6656 -2.0411 1.3932 37 1 2.1802 -2.7718 0.7114 38 1 3.4652 -1.2160 3.5034 39 1 1.9880 -2.2089 3.5196 40 1 1.0408 -2.2764 5.8659 41 1 0.8389 1.2675 8.8524 42 1 1.2835 2.8812 8.9975 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986293117.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:24 Heat of formation + Delta-G solvation = 48.055490 kcal Electronic energy + Delta-G solvation = -26829.896587 eV Core-core repulsion = 22847.931154 eV Total energy + Delta-G solvation = -3981.965433 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.70877 -40.20448 -39.29764 -37.68200 -34.81970 -34.26426 -33.76141 -32.17172 -31.70481 -31.05680 -29.63098 -28.23749 -25.34097 -24.77981 -23.29607 -23.00573 -22.28863 -20.88117 -20.31995 -19.19635 -18.47764 -17.68716 -17.30564 -17.20238 -16.57807 -16.34367 -16.09597 -15.37575 -15.19255 -14.76509 -14.45949 -14.31721 -14.11183 -13.69864 -13.52312 -13.25453 -12.94860 -12.79718 -12.34335 -12.17573 -11.95206 -11.76575 -11.30421 -11.12972 -10.89651 -10.78888 -10.71247 -10.69323 -10.58211 -10.34681 -10.18360 -10.04624 -9.96352 -9.81603 -9.59196 -9.02017 -8.63207 -7.10776 -5.87162 -3.18650 1.20868 1.70959 1.83823 2.40272 2.81055 3.09597 3.22111 3.37029 3.41923 3.44372 3.86554 3.99816 4.19041 4.44499 4.48789 4.51082 4.75862 4.83872 5.06778 5.18740 5.33844 5.40310 5.55633 5.64659 5.69992 5.77810 5.94746 5.99734 6.02509 6.13171 6.17175 6.32678 6.45487 6.47658 6.49574 6.56381 6.81068 6.98863 7.46072 7.59426 7.75004 8.00258 8.02519 8.29537 9.41148 9.94739 10.28976 11.34750 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026396 B = 0.002424 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.530395 B =11550.369442 C =12096.911288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.129 3.871 3 H 0.080 0.920 4 C 0.177 3.823 5 H 0.066 0.934 6 N -0.715 5.715 7 C -0.247 4.247 8 H 0.072 0.928 9 C -0.009 4.009 10 N -0.928 5.928 11 Si 0.909 3.091 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.156 4.156 16 C 0.092 3.908 17 N -0.604 5.604 18 C 0.512 3.488 19 O -0.510 6.510 20 C 0.103 3.897 21 N -0.287 5.287 22 C 0.194 3.806 23 N -0.486 5.486 24 C 0.127 3.873 25 C 0.624 3.376 26 N -0.835 5.835 27 O -0.517 6.517 28 N -0.213 5.213 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.386 0.614 33 H 0.257 0.743 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.129 0.871 39 H 0.139 0.861 40 H 0.228 0.772 41 H 0.410 0.590 42 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.303 -12.763 22.438 26.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.026 3.974 3 H 0.098 0.902 4 C 0.065 3.935 5 H 0.083 0.917 6 N -0.355 5.355 7 C -0.378 4.378 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.575 5.575 11 Si 0.739 3.261 12 H -0.216 1.216 13 H -0.217 1.217 14 H -0.207 1.207 15 C -0.197 4.197 16 C -0.031 4.031 17 N -0.340 5.340 18 C 0.297 3.703 19 O -0.385 6.385 20 C -0.022 4.022 21 N -0.083 5.083 22 C -0.102 4.102 23 N -0.212 5.212 24 C -0.152 4.152 25 C 0.404 3.596 26 N -0.401 5.401 27 O -0.388 6.388 28 N -0.052 5.052 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.221 0.779 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.146 0.854 39 H 0.157 0.843 40 H 0.244 0.756 41 H 0.240 0.760 42 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -3.137 -11.217 21.950 24.849 hybrid contribution -0.002 -0.561 -0.762 0.946 sum -3.139 -11.779 21.188 24.445 Atomic orbital electron populations 1.22040 0.94691 1.01591 1.02895 1.21966 0.94476 0.97099 0.83895 0.90174 1.21228 0.93505 0.91620 0.87100 0.91659 1.42353 1.80688 1.09313 1.03156 1.19172 1.39561 0.95271 0.83762 0.90959 1.24788 1.01900 0.95640 0.98234 1.69662 1.52013 1.03138 1.32703 0.86177 0.77399 0.77609 0.84866 1.21602 1.21716 1.20680 1.23587 1.01595 1.01921 0.92613 1.22515 0.94580 0.88077 0.97918 1.48504 1.52220 1.28740 1.04493 1.19725 0.82019 0.85987 0.82563 1.90836 1.38957 1.26102 1.82581 1.21928 1.03942 0.97762 0.78528 1.46951 1.40104 1.07033 1.14189 1.26464 0.97984 1.01265 0.84454 1.71185 1.21696 1.00168 1.28142 1.23595 1.04713 0.95062 0.91857 1.16241 0.78012 0.84253 0.81073 1.43413 1.62036 1.18119 1.16499 1.90907 1.43931 1.33991 1.70004 1.74491 1.18907 0.98902 1.12883 0.92098 0.90919 0.93029 0.77915 0.93262 0.90436 0.90320 0.91197 0.91186 0.85358 0.84339 0.75605 0.76010 0.75812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.11 37.16 0.34 -2.09 16 2 C 0.13 2.12 3.21 -66.95 -0.21 1.91 16 3 H 0.08 1.56 7.69 -51.93 -0.40 1.16 16 4 C 0.18 3.13 3.12 -66.09 -0.21 2.93 16 5 H 0.07 1.15 7.83 -51.93 -0.41 0.74 16 6 N -0.71 -16.71 5.25 -51.65 -0.27 -16.98 16 7 C -0.25 -6.41 9.98 -15.06 -0.15 -6.56 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 10 N -0.93 -27.28 13.06 55.49 0.72 -26.56 16 11 Si 0.91 21.52 29.55 -169.99 -5.02 16.49 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 C -0.16 -2.23 6.77 -24.58 -0.17 -2.40 16 16 C 0.09 0.92 6.69 -2.53 -0.02 0.90 16 17 N -0.60 -7.94 3.06 -163.01 -0.50 -8.44 16 18 C 0.51 6.88 7.65 -10.99 -0.08 6.80 16 19 O -0.51 -9.42 14.71 5.55 0.08 -9.34 16 20 C 0.10 0.83 5.93 -5.19 -0.03 0.80 16 21 N -0.29 -3.13 3.18 -63.77 -0.20 -3.33 16 22 C 0.19 1.61 12.57 -90.49 -1.14 0.47 16 23 N -0.49 -5.31 11.09 -12.37 -0.14 -5.45 16 24 C 0.13 1.77 7.96 -156.35 -1.24 0.53 16 25 C 0.62 8.48 8.10 -12.32 -0.10 8.38 16 26 N -0.83 -6.80 8.87 30.54 0.27 -6.53 16 27 O -0.52 -9.16 17.92 5.32 0.10 -9.06 16 28 N -0.21 -3.28 11.03 32.07 0.35 -2.92 16 29 H 0.06 1.02 6.89 -51.92 -0.36 0.66 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.39 9.91 7.51 -40.82 -0.31 9.60 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.07 0.50 7.48 -51.93 -0.39 0.11 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.13 0.79 7.85 -51.93 -0.41 0.38 16 39 H 0.14 0.40 8.06 -51.93 -0.42 -0.01 16 40 H 0.23 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.41 2.49 8.54 -40.82 -0.35 2.14 16 42 H 0.41 2.45 8.93 -40.82 -0.36 2.09 16 LS Contribution 361.32 15.07 5.45 5.45 Total: -1.00 -38.56 361.32 -7.75 -46.31 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -5.48 Total: 9.04 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: -3.11 Total: 11.32 kcal Atomic # 7 Polarization: -70.45 SS G_CDS: 0.24 Total: -70.21 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: 0.18 Total: -18.40 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -38.56 -7.75 -46.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986293117.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.366 kcal (2) G-P(sol) polarization free energy of solvation -38.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds