Wall clock time and date at job start Fri Apr 10 2020 18:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.99699 * 2 1 4 4 C 1.54328 * 109.98868 * 238.96720 * 2 1 3 5 5 H 1.08998 * 110.67099 * 337.03941 * 4 2 1 6 6 N 1.46499 * 110.85315 * 100.19622 * 4 2 1 7 7 C 1.36942 * 119.99770 * 200.14206 * 6 4 2 8 8 H 1.07991 * 119.99945 * 0.02562 * 7 6 4 9 9 C 1.38816 * 119.99415 * 179.97438 * 7 6 4 10 10 N 1.31615 * 120.00358 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99696 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47141 * 89.99887 * 11 9 7 13 13 H 1.48498 * 109.46874 * 210.00313 * 11 9 7 14 14 H 1.48500 * 109.46739 * 330.00099 * 11 9 7 15 15 C 1.55167 * 103.01976 * 218.66411 * 4 2 1 16 16 C 1.54910 * 101.57828 * 35.30301 * 15 4 2 17 17 N 1.47021 * 109.88378 * 121.09623 * 2 1 3 18 18 C 1.34778 * 125.64868 * 298.39585 * 17 2 1 19 19 O 1.21283 * 120.00087 * 359.71569 * 18 17 2 20 20 C 1.50699 * 119.99954 * 179.71619 * 18 17 2 21 21 N 1.46500 * 109.47329 * 179.97438 * 20 18 17 22 22 C 1.34582 * 125.75077 * 124.99502 * 21 20 18 23 23 N 1.30867 * 107.62678 * 180.02562 * 22 21 20 24 24 C 1.34553 * 107.27030 * 0.02562 * 23 22 21 25 25 C 1.47864 * 126.04966 * 179.97438 * 24 23 22 26 26 N 1.34784 * 120.00042 * 0.02562 * 25 24 23 27 27 O 1.21552 * 120.00186 * 180.02562 * 25 24 23 28 28 N 1.28859 * 125.74612 * 305.31917 * 21 20 18 29 29 H 1.09008 * 109.46782 * 300.35481 * 1 2 3 30 30 H 1.08991 * 109.47322 * 60.35480 * 1 2 3 31 31 H 1.08997 * 109.47118 * 180.36047 * 1 2 3 32 32 H 0.97000 * 119.99993 * 20.14577 * 6 4 2 33 33 H 0.97001 * 120.00363 * 179.97438 * 10 9 7 34 34 H 1.08996 * 111.00046 * 277.23096 * 15 4 2 35 35 H 1.08996 * 111.03720 * 153.38997 * 15 4 2 36 36 H 1.09004 * 110.36692 * 204.15315 * 16 15 4 37 37 H 1.09005 * 110.36603 * 81.83289 * 16 15 4 38 38 H 1.09001 * 109.46920 * 59.99914 * 20 18 17 39 39 H 1.09000 * 109.47060 * 300.00191 * 20 18 17 40 40 H 1.08000 * 126.18595 * 0.03277 * 22 21 20 41 41 H 0.97000 * 119.99339 * 359.97438 * 26 25 24 42 42 H 0.96995 * 120.00015 * 179.72533 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7477 -1.2427 5 1 1.3067 -1.4404 -1.6225 6 7 2.4636 0.1969 -2.2863 7 6 2.5654 -0.2212 -3.5864 8 1 2.3459 -1.2472 -3.8423 9 6 2.9496 0.6740 -4.5752 10 7 3.2165 1.9245 -4.2633 11 14 3.0877 0.1039 -6.3488 12 1 1.7830 0.2924 -7.0324 13 1 4.1308 0.8995 -7.0446 14 1 3.4593 -1.3336 -6.3790 15 6 3.2864 -1.5183 -0.6916 16 6 2.8100 -1.8824 0.7368 17 7 2.0301 -0.7141 1.1839 18 6 1.8074 -0.3621 2.4657 19 8 1.1475 0.6237 2.7180 20 6 2.3785 -1.1934 3.5854 21 7 1.9985 -0.6061 4.8726 22 6 1.3610 -1.2450 5.8709 23 7 1.1994 -0.3906 6.8489 24 6 1.7378 0.7770 6.4522 25 6 1.7822 2.0272 7.2406 26 7 1.2508 2.0623 8.4788 27 8 2.2980 3.0232 6.7722 28 7 2.2130 0.6111 5.2374 29 1 -0.3633 0.5194 0.8869 30 1 -0.3633 0.5083 -0.8931 31 1 -0.3633 -1.0276 0.0065 32 1 2.6604 1.1185 -2.0564 33 1 3.4854 2.5500 -4.9543 34 1 4.1669 -0.8768 -0.6580 35 1 3.4813 -2.4155 -1.2790 36 1 3.6656 -2.0411 1.3932 37 1 2.1802 -2.7718 0.7114 38 1 3.4652 -1.2160 3.5034 39 1 1.9880 -2.2089 3.5196 40 1 1.0408 -2.2764 5.8659 41 1 0.8389 1.2675 8.8524 42 1 1.2835 2.8812 8.9975 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986293117.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:23 Heat of formation + Delta-G solvation = 15.678078 kcal Electronic energy + Delta-G solvation = -26831.300576 eV Core-core repulsion = 22847.931154 eV Total energy + Delta-G solvation = -3983.369422 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.49371 -41.30021 -40.32454 -38.90309 -35.94561 -35.66370 -34.64377 -33.49343 -32.81447 -32.28930 -31.05809 -29.17605 -26.86464 -25.72982 -24.84463 -24.00855 -23.18497 -21.82073 -21.58840 -20.31825 -19.29137 -19.15133 -18.51271 -18.11145 -17.56681 -17.33886 -17.11962 -16.52816 -16.25189 -15.97866 -15.58419 -15.47850 -15.28884 -15.08343 -14.78601 -14.60835 -14.01940 -13.88171 -13.59039 -13.31008 -13.13106 -12.93170 -12.91645 -12.64811 -12.55367 -12.18686 -12.06675 -11.72223 -11.68166 -11.61158 -11.54183 -11.51093 -11.12785 -10.91804 -10.86026 -10.49822 -9.72473 -9.03366 -7.94527 -5.24870 0.30276 0.98244 1.17700 1.45143 1.48834 1.50548 1.58755 1.86154 2.23208 2.32070 2.57026 3.13618 3.25870 3.39357 3.61436 3.73400 3.77467 3.90509 3.99452 4.06576 4.15350 4.18710 4.35592 4.45373 4.51108 4.63145 4.76211 4.83956 4.94511 5.03619 5.19757 5.23842 5.26572 5.29155 5.47996 5.55788 5.57154 5.74097 6.20338 6.25515 6.47214 6.96169 7.02951 7.17523 7.31483 8.04563 8.27166 9.29222 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026396 B = 0.002424 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.530395 B =11550.369442 C =12096.911288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.135 3.865 3 H 0.034 0.966 4 C 0.169 3.831 5 H 0.074 0.926 6 N -0.733 5.733 7 C -0.233 4.233 8 H 0.087 0.913 9 C -0.080 4.080 10 N -0.974 5.974 11 Si 0.974 3.026 12 H -0.290 1.290 13 H -0.302 1.302 14 H -0.261 1.261 15 C -0.151 4.151 16 C 0.100 3.900 17 N -0.603 5.603 18 C 0.505 3.495 19 O -0.572 6.572 20 C 0.108 3.892 21 N -0.293 5.293 22 C 0.216 3.784 23 N -0.497 5.497 24 C 0.109 3.891 25 C 0.616 3.384 26 N -0.804 5.804 27 O -0.574 6.574 28 N -0.271 5.271 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.368 0.632 33 H 0.249 0.751 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.153 0.847 39 H 0.206 0.794 40 H 0.290 0.710 41 H 0.423 0.577 42 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.616 -17.984 24.060 30.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.030 3.970 3 H 0.052 0.948 4 C 0.060 3.940 5 H 0.092 0.908 6 N -0.372 5.372 7 C -0.364 4.364 8 H 0.105 0.895 9 C -0.272 4.272 10 N -0.625 5.625 11 Si 0.803 3.197 12 H -0.218 1.218 13 H -0.229 1.229 14 H -0.186 1.186 15 C -0.191 4.191 16 C -0.021 4.021 17 N -0.337 5.337 18 C 0.292 3.708 19 O -0.451 6.451 20 C -0.014 4.014 21 N -0.089 5.089 22 C -0.078 4.078 23 N -0.223 5.223 24 C -0.171 4.171 25 C 0.397 3.603 26 N -0.370 5.370 27 O -0.450 6.450 28 N -0.111 5.111 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.200 0.800 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.171 0.829 39 H 0.223 0.777 40 H 0.305 0.695 41 H 0.256 0.744 42 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -3.469 -16.566 23.647 29.080 hybrid contribution 0.020 0.964 -1.168 1.514 sum -3.449 -15.602 22.479 27.580 Atomic orbital electron populations 1.21908 0.94249 1.02716 1.01148 1.21573 0.94744 0.95187 0.85518 0.94807 1.21478 0.95342 0.91002 0.86187 0.90793 1.42581 1.81163 1.09556 1.03922 1.19633 1.36526 0.95525 0.84741 0.89480 1.25622 1.03349 0.95875 1.02350 1.69844 1.54773 1.04504 1.33387 0.85130 0.76675 0.77860 0.80030 1.21758 1.22918 1.18569 1.23393 0.98576 1.01235 0.95944 1.22766 0.96396 0.87630 0.95299 1.48528 1.52249 1.29217 1.03714 1.20775 0.80931 0.85678 0.83368 1.90825 1.41792 1.28983 1.83493 1.22355 1.05319 0.98824 0.74945 1.47157 1.40303 1.06013 1.15383 1.27683 0.94853 1.02719 0.82514 1.71177 1.22209 0.99498 1.29403 1.23646 1.05558 0.95956 0.91898 1.16545 0.77772 0.83883 0.82150 1.43205 1.59894 1.19204 1.14718 1.90864 1.46820 1.35843 1.71512 1.74404 1.20956 1.01790 1.13961 0.93614 0.92888 0.90283 0.80037 0.94220 0.93094 0.88849 0.86895 0.86955 0.82914 0.77667 0.69513 0.74442 0.74483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 9.11 71.98 0.66 -3.85 16 2 C 0.13 4.48 3.21 45.34 0.15 4.63 16 3 H 0.03 1.43 7.69 -2.39 -0.02 1.41 16 4 C 0.17 5.86 3.12 46.19 0.14 6.00 16 5 H 0.07 2.44 7.83 -2.39 -0.02 2.42 16 6 N -0.73 -35.20 5.25 -317.31 -1.67 -36.87 16 7 C -0.23 -12.14 9.98 84.03 0.84 -11.30 16 8 H 0.09 4.20 7.83 -2.92 -0.02 4.17 16 9 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 10 N -0.97 -59.80 13.06 21.65 0.28 -59.52 16 11 Si 0.97 44.82 29.55 68.60 2.03 46.85 16 12 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 13 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 14 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 15 C -0.15 -3.93 6.77 31.99 0.22 -3.71 16 16 C 0.10 1.48 6.69 86.86 0.58 2.06 16 17 N -0.60 -14.37 3.06 -788.03 -2.41 -16.79 16 18 C 0.50 12.45 7.65 87.66 0.67 13.13 16 19 O -0.57 -21.48 14.71 -3.04 -0.04 -21.52 16 20 C 0.11 1.19 5.93 85.63 0.51 1.70 16 21 N -0.29 -5.45 3.18 -355.65 -1.13 -6.59 16 22 C 0.22 2.61 12.57 180.30 2.27 4.88 16 23 N -0.50 -9.63 11.09 -193.04 -2.14 -11.77 16 24 C 0.11 3.00 7.96 137.12 1.09 4.09 16 25 C 0.62 17.25 8.10 86.79 0.70 17.95 16 26 N -0.80 -12.75 8.87 -175.58 -1.56 -14.31 16 27 O -0.57 -21.65 17.92 -3.88 -0.07 -21.72 16 28 N -0.27 -8.26 11.03 -52.44 -0.58 -8.84 16 29 H 0.04 1.58 6.89 -2.38 -0.02 1.57 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.37 20.07 7.51 -92.71 -0.70 19.37 16 33 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 34 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.11 0.82 7.48 -2.39 -0.02 0.80 16 37 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.15 1.01 7.85 -2.39 -0.02 0.99 16 39 H 0.21 -0.57 8.06 -2.39 -0.02 -0.59 16 40 H 0.29 -0.73 8.06 -2.91 -0.02 -0.75 16 41 H 0.42 4.58 8.54 -92.71 -0.79 3.79 16 42 H 0.42 4.86 8.93 -92.71 -0.83 4.03 16 Total: -1.00 -95.93 361.32 -0.23 -96.16 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: -1.22 Total: 23.36 kcal Atomic # 6 Polarization: 23.26 SS G_CDS: 8.29 Total: 31.54 kcal Atomic # 7 Polarization: -145.47 SS G_CDS: -9.21 Total: -154.68 kcal Atomic # 8 Polarization: -43.12 SS G_CDS: -0.11 Total: -43.24 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -95.93 -0.23 -96.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986293117.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.835 kcal (2) G-P(sol) polarization free energy of solvation -95.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds