Wall clock time and date at job start Fri Apr 10 2020 18:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.99838 * 2 1 4 4 C 1.54335 * 109.78215 * 121.16597 * 2 1 3 5 5 H 1.09000 * 110.67030 * 215.88256 * 4 2 1 6 6 N 1.46505 * 110.84855 * 339.02649 * 4 2 1 7 7 C 1.36935 * 120.00312 * 200.14283 * 6 4 2 8 8 H 1.08007 * 119.99656 * 0.02562 * 7 6 4 9 9 C 1.38807 * 120.00132 * 180.02562 * 7 6 4 10 10 N 1.31622 * 119.99803 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99984 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.47052 * 90.00675 * 11 9 7 13 13 H 1.48503 * 109.47077 * 210.00398 * 11 9 7 14 14 H 1.48498 * 109.47159 * 330.00452 * 11 9 7 15 15 C 1.55160 * 103.02232 * 97.49475 * 4 2 1 16 16 C 1.54912 * 101.57860 * 35.31196 * 15 4 2 17 17 N 1.47022 * 109.88393 * 238.90385 * 2 1 3 18 18 C 1.34784 * 125.64460 * 59.55873 * 17 2 1 19 19 O 1.21274 * 119.99897 * 359.44612 * 18 17 2 20 20 C 1.50695 * 119.99635 * 179.71653 * 18 17 2 21 21 N 1.46506 * 109.46874 * 180.02562 * 20 18 17 22 22 C 1.34579 * 125.74830 * 124.71721 * 21 20 18 23 23 N 1.30877 * 107.62438 * 179.86316 * 22 21 20 24 24 C 1.34549 * 107.26387 * 0.39395 * 23 22 21 25 25 C 1.47870 * 126.04253 * 179.78982 * 24 23 22 26 26 N 1.34773 * 120.00483 * 359.94876 * 25 24 23 27 27 O 1.21567 * 119.99840 * 179.97438 * 25 24 23 28 28 N 1.28848 * 125.74389 * 305.02089 * 21 20 18 29 29 H 1.08999 * 109.47118 * 179.64291 * 1 2 3 30 30 H 1.09001 * 109.46869 * 299.63925 * 1 2 3 31 31 H 1.08999 * 109.46976 * 59.63804 * 1 2 3 32 32 H 0.97009 * 119.99688 * 20.15205 * 6 4 2 33 33 H 0.97006 * 119.99606 * 179.97438 * 10 9 7 34 34 H 1.08995 * 111.00287 * 277.23637 * 15 4 2 35 35 H 1.09002 * 111.03497 * 153.39561 * 15 4 2 36 36 H 1.08998 * 110.36455 * 204.15447 * 16 15 4 37 37 H 1.08991 * 110.46486 * 81.87299 * 16 15 4 38 38 H 1.09005 * 109.47403 * 300.00056 * 20 18 17 39 39 H 1.09002 * 109.47422 * 60.00295 * 20 18 17 40 40 H 1.07997 * 126.18880 * 0.02562 * 22 21 20 41 41 H 0.96998 * 119.99615 * 0.02562 * 26 25 24 42 42 H 0.96996 * 120.00689 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0523 -0.7516 1.2427 5 1 2.9601 -0.2827 1.6225 6 7 1.0258 -0.8101 2.2863 7 6 1.3839 -1.0488 3.5863 8 1 2.4231 -1.1935 3.8423 9 6 0.4112 -1.1047 4.5750 10 7 0.7555 -1.3336 5.8246 11 14 -1.3861 -0.8537 4.1324 12 1 -2.0017 -2.1636 3.8003 13 1 -2.1002 -0.2494 5.2857 14 1 -1.4852 0.0515 2.9593 15 6 2.3562 -2.1698 0.6914 16 6 2.8614 -1.8465 -0.7369 17 7 2.0300 -0.7141 -1.1839 18 6 1.7753 -0.3844 -2.4657 19 8 1.0706 0.5698 -2.7179 20 6 2.3613 -1.2053 -3.5855 21 7 1.9402 -0.6464 -4.8726 22 6 2.7595 -0.2612 -5.8683 23 7 2.0123 0.1787 -6.8486 24 6 0.7308 0.0723 -6.4526 25 6 -0.4587 0.4577 -7.2421 26 7 -0.3092 0.9699 -8.4797 27 8 -1.5715 0.3130 -6.7746 28 7 0.7232 -0.4360 -5.2399 29 1 -0.3633 -1.0276 -0.0064 30 1 -0.3633 0.5082 0.8932 31 1 -0.3633 0.5194 -0.8867 32 1 0.0924 -0.6798 2.0564 33 1 0.0758 -1.3724 6.5156 34 1 1.4522 -2.7778 0.6579 35 1 3.1327 -2.6598 1.2789 36 1 2.7178 -2.7048 -1.3933 37 1 3.9125 -1.5594 -0.7134 38 1 3.4491 -1.1856 -3.5197 39 1 2.0109 -2.2342 -3.5036 40 1 3.8384 -0.3090 -5.8609 41 1 0.5788 1.0853 -8.8528 42 1 -1.0894 1.2223 -8.9977 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986293120.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:29 Heat of formation + Delta-G solvation = 59.471326 kcal Electronic energy + Delta-G solvation = -27050.500452 eV Core-core repulsion = 23069.030048 eV Total energy + Delta-G solvation = -3981.470405 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.76407 -40.34890 -39.35255 -37.88903 -34.88229 -34.49490 -33.81059 -32.21295 -31.81962 -30.99536 -29.97319 -28.31717 -25.61925 -24.85764 -23.46540 -22.85970 -22.49880 -20.93626 -20.05067 -19.02237 -18.52526 -18.09333 -17.63080 -17.28896 -16.66635 -16.51101 -16.00812 -15.51486 -15.24048 -14.90545 -14.62246 -14.26204 -14.23734 -14.11691 -13.55616 -13.25078 -12.91054 -12.79521 -12.34716 -12.22216 -12.10130 -11.82318 -11.51654 -11.27341 -10.96587 -10.84874 -10.76515 -10.66711 -10.63560 -10.43966 -10.22360 -10.10177 -10.01331 -9.71782 -9.59367 -9.05747 -8.73557 -7.41432 -5.88102 -3.25631 1.15055 1.65449 1.78361 2.30944 2.73245 3.04010 3.16700 3.31144 3.34369 3.40563 3.81251 3.93461 4.12053 4.39497 4.44796 4.49634 4.70115 4.74163 4.94120 5.03049 5.23701 5.33330 5.45065 5.52100 5.64531 5.71851 5.75551 5.91776 5.94526 6.02265 6.09231 6.26815 6.37286 6.40281 6.43074 6.50709 6.72607 6.94002 7.35784 7.69614 7.85466 7.91668 7.97074 8.30491 9.07387 9.79832 9.97805 11.29500 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023480 B = 0.002705 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.229425 B =10349.015277 C =11273.574972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.130 3.870 3 H 0.077 0.923 4 C 0.180 3.820 5 H 0.073 0.927 6 N -0.741 5.741 7 C -0.251 4.251 8 H 0.092 0.908 9 C 0.010 3.990 10 N -0.929 5.929 11 Si 0.878 3.122 12 H -0.282 1.282 13 H -0.289 1.289 14 H -0.275 1.275 15 C -0.152 4.152 16 C 0.091 3.909 17 N -0.605 5.605 18 C 0.513 3.487 19 O -0.510 6.510 20 C 0.103 3.897 21 N -0.288 5.288 22 C 0.194 3.806 23 N -0.486 5.486 24 C 0.128 3.872 25 C 0.624 3.376 26 N -0.835 5.835 27 O -0.518 6.518 28 N -0.214 5.214 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.368 0.632 33 H 0.261 0.739 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.140 0.860 39 H 0.129 0.871 40 H 0.228 0.772 41 H 0.410 0.590 42 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.105 -0.715 -26.273 27.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.026 3.974 3 H 0.095 0.905 4 C 0.069 3.931 5 H 0.091 0.909 6 N -0.386 5.386 7 C -0.380 4.380 8 H 0.110 0.890 9 C -0.186 4.186 10 N -0.576 5.576 11 Si 0.708 3.292 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.202 1.202 15 C -0.194 4.194 16 C -0.032 4.032 17 N -0.341 5.341 18 C 0.298 3.702 19 O -0.384 6.384 20 C -0.021 4.021 21 N -0.083 5.083 22 C -0.101 4.101 23 N -0.212 5.212 24 C -0.152 4.152 25 C 0.404 3.596 26 N -0.400 5.400 27 O -0.389 6.389 28 N -0.053 5.053 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.205 0.795 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.158 0.842 39 H 0.147 0.853 40 H 0.244 0.756 41 H 0.240 0.760 42 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 7.647 -0.360 -25.731 26.846 hybrid contribution -0.672 0.106 -0.305 0.745 sum 6.975 -0.254 -26.036 26.955 Atomic orbital electron populations 1.22096 0.94865 1.02494 1.02941 1.21886 0.95212 0.96057 0.84210 0.90469 1.21140 0.93066 0.92265 0.86664 0.90913 1.42982 1.04227 1.86874 1.04486 1.19026 0.95299 1.41802 0.81920 0.89008 1.24653 0.97422 1.01384 0.95170 1.69692 1.32767 1.55426 0.99681 0.86673 0.86774 0.78177 0.77551 1.20893 1.21486 1.20162 1.23525 1.02129 1.01041 0.92663 1.22532 0.94717 0.88105 0.97837 1.48530 1.50174 1.30930 1.04441 1.19744 0.82265 0.85660 0.82536 1.90831 1.36725 1.28282 1.82607 1.21927 1.02512 0.99228 0.78471 1.46946 1.03722 1.43401 1.14259 1.26481 1.00148 0.99067 0.84383 1.71195 1.00990 1.20976 1.27994 1.23591 0.92585 1.07102 0.91901 1.16244 0.85295 0.76970 0.81062 1.43413 1.13396 1.66652 1.16566 1.90908 1.24535 1.53434 1.70062 1.74474 1.02635 1.15261 1.12926 0.92394 0.90721 0.91486 0.79515 0.92880 0.90548 0.89812 0.91075 0.90868 0.84247 0.85319 0.75555 0.75982 0.75795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 7.93 37.16 0.29 -2.56 16 2 C 0.13 2.00 3.49 -66.95 -0.23 1.77 16 3 H 0.08 1.22 8.14 -51.92 -0.42 0.79 16 4 C 0.18 3.03 3.45 -66.09 -0.23 2.80 16 5 H 0.07 1.23 8.12 -51.93 -0.42 0.81 16 6 N -0.74 -16.19 4.82 -51.64 -0.25 -16.44 16 7 C -0.25 -6.61 10.46 -15.06 -0.16 -6.77 16 8 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 9 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 10 N -0.93 -28.13 13.97 55.49 0.78 -27.35 16 11 Si 0.88 21.55 27.73 -169.99 -4.71 16.84 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 13 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 14 H -0.28 -6.39 6.50 56.52 0.37 -6.03 16 15 C -0.15 -2.06 6.77 -24.58 -0.17 -2.23 16 16 C 0.09 0.83 6.69 -2.53 -0.02 0.82 16 17 N -0.61 -7.39 3.08 -163.01 -0.50 -7.89 16 18 C 0.51 6.44 7.65 -10.98 -0.08 6.36 16 19 O -0.51 -8.94 14.54 5.56 0.08 -8.86 16 20 C 0.10 0.76 5.93 -5.19 -0.03 0.73 16 21 N -0.29 -2.97 3.18 -63.76 -0.20 -3.17 16 22 C 0.19 1.53 12.57 -90.48 -1.14 0.39 16 23 N -0.49 -5.10 11.09 -12.37 -0.14 -5.24 16 24 C 0.13 1.72 7.96 -156.36 -1.24 0.47 16 25 C 0.62 8.21 8.10 -12.32 -0.10 8.11 16 26 N -0.83 -6.50 8.87 30.54 0.27 -6.23 16 27 O -0.52 -8.92 17.92 5.31 0.10 -8.83 16 28 N -0.21 -3.16 11.03 32.07 0.35 -2.81 16 29 H 0.06 1.00 8.05 -51.93 -0.42 0.58 16 30 H 0.07 1.38 6.72 -51.93 -0.35 1.03 16 31 H 0.07 1.21 6.73 -51.93 -0.35 0.86 16 32 H 0.37 8.11 2.80 -40.82 -0.11 8.00 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 0.45 7.48 -51.93 -0.39 0.06 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.14 0.32 8.06 -51.93 -0.42 -0.10 16 39 H 0.13 0.70 7.85 -51.93 -0.41 0.29 16 40 H 0.23 0.48 8.06 -52.49 -0.42 0.06 16 41 H 0.41 2.36 8.54 -40.82 -0.35 2.01 16 42 H 0.41 2.32 8.93 -40.82 -0.36 1.95 16 LS Contribution 353.75 15.07 5.33 5.33 Total: -1.00 -39.34 353.75 -7.38 -46.72 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -5.29 Total: 7.85 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: -3.20 Total: 10.07 kcal Atomic # 7 Polarization: -69.44 SS G_CDS: 0.31 Total: -69.13 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: 0.18 Total: -17.68 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.84 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -39.34 -7.38 -46.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986293120.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.193 kcal (2) G-P(sol) polarization free energy of solvation -39.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds