Wall clock time and date at job start Fri Apr 10 2020 18:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.99838 * 2 1 4 4 C 1.54335 * 109.78215 * 121.16597 * 2 1 3 5 5 H 1.09000 * 110.67030 * 215.88256 * 4 2 1 6 6 N 1.46505 * 110.84855 * 339.02649 * 4 2 1 7 7 C 1.36935 * 120.00312 * 200.14283 * 6 4 2 8 8 H 1.08007 * 119.99656 * 0.02562 * 7 6 4 9 9 C 1.38807 * 120.00132 * 180.02562 * 7 6 4 10 10 N 1.31622 * 119.99803 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99984 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.47052 * 90.00675 * 11 9 7 13 13 H 1.48503 * 109.47077 * 210.00398 * 11 9 7 14 14 H 1.48498 * 109.47159 * 330.00452 * 11 9 7 15 15 C 1.55160 * 103.02232 * 97.49475 * 4 2 1 16 16 C 1.54912 * 101.57860 * 35.31196 * 15 4 2 17 17 N 1.47022 * 109.88393 * 238.90385 * 2 1 3 18 18 C 1.34784 * 125.64460 * 59.55873 * 17 2 1 19 19 O 1.21274 * 119.99897 * 359.44612 * 18 17 2 20 20 C 1.50695 * 119.99635 * 179.71653 * 18 17 2 21 21 N 1.46506 * 109.46874 * 180.02562 * 20 18 17 22 22 C 1.34579 * 125.74830 * 124.71721 * 21 20 18 23 23 N 1.30877 * 107.62438 * 179.86316 * 22 21 20 24 24 C 1.34549 * 107.26387 * 0.39395 * 23 22 21 25 25 C 1.47870 * 126.04253 * 179.78982 * 24 23 22 26 26 N 1.34773 * 120.00483 * 359.94876 * 25 24 23 27 27 O 1.21567 * 119.99840 * 179.97438 * 25 24 23 28 28 N 1.28848 * 125.74389 * 305.02089 * 21 20 18 29 29 H 1.08999 * 109.47118 * 179.64291 * 1 2 3 30 30 H 1.09001 * 109.46869 * 299.63925 * 1 2 3 31 31 H 1.08999 * 109.46976 * 59.63804 * 1 2 3 32 32 H 0.97009 * 119.99688 * 20.15205 * 6 4 2 33 33 H 0.97006 * 119.99606 * 179.97438 * 10 9 7 34 34 H 1.08995 * 111.00287 * 277.23637 * 15 4 2 35 35 H 1.09002 * 111.03497 * 153.39561 * 15 4 2 36 36 H 1.08998 * 110.36455 * 204.15447 * 16 15 4 37 37 H 1.08991 * 110.46486 * 81.87299 * 16 15 4 38 38 H 1.09005 * 109.47403 * 300.00056 * 20 18 17 39 39 H 1.09002 * 109.47422 * 60.00295 * 20 18 17 40 40 H 1.07997 * 126.18880 * 0.02562 * 22 21 20 41 41 H 0.96998 * 119.99615 * 0.02562 * 26 25 24 42 42 H 0.96996 * 120.00689 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0523 -0.7516 1.2427 5 1 2.9601 -0.2827 1.6225 6 7 1.0258 -0.8101 2.2863 7 6 1.3839 -1.0488 3.5863 8 1 2.4231 -1.1935 3.8423 9 6 0.4112 -1.1047 4.5750 10 7 0.7555 -1.3336 5.8246 11 14 -1.3861 -0.8537 4.1324 12 1 -2.0017 -2.1636 3.8003 13 1 -2.1002 -0.2494 5.2857 14 1 -1.4852 0.0515 2.9593 15 6 2.3562 -2.1698 0.6914 16 6 2.8614 -1.8465 -0.7369 17 7 2.0300 -0.7141 -1.1839 18 6 1.7753 -0.3844 -2.4657 19 8 1.0706 0.5698 -2.7179 20 6 2.3613 -1.2053 -3.5855 21 7 1.9402 -0.6464 -4.8726 22 6 2.7595 -0.2612 -5.8683 23 7 2.0123 0.1787 -6.8486 24 6 0.7308 0.0723 -6.4526 25 6 -0.4587 0.4577 -7.2421 26 7 -0.3092 0.9699 -8.4797 27 8 -1.5715 0.3130 -6.7746 28 7 0.7232 -0.4360 -5.2399 29 1 -0.3633 -1.0276 -0.0064 30 1 -0.3633 0.5082 0.8932 31 1 -0.3633 0.5194 -0.8867 32 1 0.0924 -0.6798 2.0564 33 1 0.0758 -1.3724 6.5156 34 1 1.4522 -2.7778 0.6579 35 1 3.1327 -2.6598 1.2789 36 1 2.7178 -2.7048 -1.3933 37 1 3.9125 -1.5594 -0.7134 38 1 3.4491 -1.1856 -3.5197 39 1 2.0109 -2.2342 -3.5036 40 1 3.8384 -0.3090 -5.8609 41 1 0.5788 1.0853 -8.8528 42 1 -1.0894 1.2223 -8.9977 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986293120.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:28 Heat of formation + Delta-G solvation = 26.669792 kcal Electronic energy + Delta-G solvation = -27051.922834 eV Core-core repulsion = 23069.030048 eV Total energy + Delta-G solvation = -3982.892786 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.49669 -41.38652 -40.32997 -39.05751 -36.08586 -35.66478 -34.64709 -33.72729 -32.84477 -32.18316 -31.37689 -29.21187 -26.96025 -25.81124 -24.96193 -23.98454 -23.28245 -21.79249 -21.17413 -20.25032 -19.85672 -19.28661 -18.53951 -18.12800 -17.54930 -17.40239 -17.09240 -16.55857 -16.32165 -15.99844 -15.87329 -15.54435 -15.46543 -15.08178 -14.83557 -14.59375 -14.08650 -13.83816 -13.61385 -13.45210 -13.21476 -13.08854 -12.91719 -12.87253 -12.65503 -12.25803 -11.94493 -11.74118 -11.68589 -11.61934 -11.54926 -11.52483 -11.11364 -10.98338 -10.86763 -10.49464 -9.75020 -9.32689 -8.04189 -5.36700 0.29767 0.97850 1.17063 1.34560 1.35204 1.41582 1.44013 1.84964 2.22961 2.31546 2.44387 3.12610 3.23423 3.28947 3.54644 3.59490 3.71892 3.84776 3.90663 4.05386 4.09120 4.15520 4.30127 4.38901 4.47398 4.55445 4.75081 4.82637 4.84329 4.99721 5.08842 5.21691 5.24665 5.29115 5.47828 5.56008 5.73324 5.77419 6.19736 6.20405 6.44514 6.95344 7.01504 7.05863 7.16813 7.81855 7.98175 9.16765 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023480 B = 0.002705 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.229425 B =10349.015277 C =11273.574972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.137 3.863 3 H 0.070 0.930 4 C 0.168 3.832 5 H 0.073 0.927 6 N -0.750 5.750 7 C -0.221 4.221 8 H 0.071 0.929 9 C -0.057 4.057 10 N -0.978 5.978 11 Si 0.935 3.065 12 H -0.279 1.279 13 H -0.297 1.297 14 H -0.260 1.260 15 C -0.149 4.149 16 C 0.100 3.900 17 N -0.603 5.603 18 C 0.507 3.493 19 O -0.569 6.569 20 C 0.107 3.893 21 N -0.293 5.293 22 C 0.216 3.784 23 N -0.498 5.498 24 C 0.108 3.892 25 C 0.616 3.384 26 N -0.805 5.805 27 O -0.574 6.574 28 N -0.269 5.269 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.367 0.633 33 H 0.257 0.743 34 H 0.060 0.940 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.205 0.795 39 H 0.155 0.845 40 H 0.289 0.711 41 H 0.423 0.577 42 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.968 -1.791 -29.332 31.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.032 3.968 3 H 0.088 0.912 4 C 0.059 3.941 5 H 0.091 0.909 6 N -0.395 5.395 7 C -0.352 4.352 8 H 0.089 0.911 9 C -0.249 4.249 10 N -0.629 5.629 11 Si 0.763 3.237 12 H -0.206 1.206 13 H -0.224 1.224 14 H -0.185 1.185 15 C -0.189 4.189 16 C -0.021 4.021 17 N -0.337 5.337 18 C 0.295 3.705 19 O -0.448 6.448 20 C -0.016 4.016 21 N -0.088 5.088 22 C -0.078 4.078 23 N -0.224 5.224 24 C -0.171 4.171 25 C 0.397 3.603 26 N -0.371 5.371 27 O -0.450 6.450 28 N -0.108 5.108 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.203 0.797 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.222 0.778 39 H 0.172 0.828 40 H 0.304 0.696 41 H 0.255 0.745 42 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 10.585 -1.446 -28.901 30.812 hybrid contribution -1.384 0.472 0.576 1.571 sum 9.201 -0.975 -28.325 29.798 Atomic orbital electron populations 1.21975 0.96535 1.01733 1.01331 1.21538 0.93746 0.96084 0.85397 0.91236 1.21400 0.91666 0.94992 0.86035 0.90947 1.43039 1.05396 1.87041 1.04036 1.19038 0.94103 1.38372 0.83673 0.91142 1.25309 1.01296 1.03061 0.95232 1.69838 1.33722 1.58560 1.00786 0.85735 0.82244 0.78334 0.77348 1.20561 1.22387 1.18516 1.23357 1.01892 0.97891 0.95787 1.22754 0.95654 0.88476 0.95253 1.48532 1.50267 1.31250 1.03680 1.20723 0.81229 0.85290 0.83262 1.90823 1.39335 1.31155 1.83457 1.22368 1.05697 0.98550 0.74963 1.47163 1.02784 1.43446 1.15445 1.27670 1.01962 0.95676 0.82531 1.71185 0.99869 1.22021 1.29287 1.23636 0.93616 1.07841 0.92005 1.16544 0.84818 0.76853 0.82105 1.43215 1.14706 1.64314 1.14847 1.90865 1.26435 1.56196 1.71541 1.74384 1.05569 1.17004 1.13892 0.92654 0.92548 0.92757 0.79670 0.93422 0.92166 0.89286 0.86665 0.87189 0.77830 0.82774 0.69629 0.74460 0.74498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.45 7.93 71.98 0.57 -4.88 16 2 C 0.14 4.07 3.49 45.34 0.16 4.23 16 3 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 4 C 0.17 5.44 3.45 46.18 0.16 5.60 16 5 H 0.07 2.36 8.12 -2.39 -0.02 2.34 16 6 N -0.75 -32.62 4.82 -317.29 -1.53 -34.15 16 7 C -0.22 -11.78 10.46 84.03 0.88 -10.90 16 8 H 0.07 4.01 8.06 -2.91 -0.02 3.98 16 9 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 10 N -0.98 -61.00 13.97 21.65 0.30 -60.70 16 11 Si 0.93 45.40 27.73 68.60 1.90 47.31 16 12 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 13 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 14 H -0.26 -11.76 6.50 99.48 0.65 -11.11 16 15 C -0.15 -3.58 6.77 31.99 0.22 -3.37 16 16 C 0.10 1.28 6.69 86.86 0.58 1.87 16 17 N -0.60 -12.68 3.08 -788.03 -2.43 -15.11 16 18 C 0.51 11.16 7.65 87.65 0.67 11.83 16 19 O -0.57 -19.59 14.54 -3.01 -0.04 -19.63 16 20 C 0.11 0.98 5.93 85.63 0.51 1.48 16 21 N -0.29 -4.98 3.18 -355.63 -1.13 -6.11 16 22 C 0.22 2.37 12.57 180.30 2.27 4.64 16 23 N -0.50 -9.11 11.09 -193.03 -2.14 -11.26 16 24 C 0.11 2.83 7.96 137.13 1.09 3.92 16 25 C 0.62 16.43 8.10 86.79 0.70 17.14 16 26 N -0.80 -11.96 8.87 -175.57 -1.56 -13.52 16 27 O -0.57 -20.75 17.92 -3.93 -0.07 -20.82 16 28 N -0.27 -7.67 11.03 -52.44 -0.58 -8.24 16 29 H 0.05 1.89 8.05 -2.39 -0.02 1.88 16 30 H 0.06 2.12 6.72 -2.39 -0.02 2.10 16 31 H 0.05 2.01 6.73 -2.39 -0.02 1.99 16 32 H 0.37 16.10 2.80 -92.70 -0.26 15.84 16 33 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.12 0.61 7.48 -2.39 -0.02 0.59 16 37 H 0.11 0.75 8.14 -2.39 -0.02 0.74 16 38 H 0.20 -0.84 8.06 -2.38 -0.02 -0.85 16 39 H 0.15 0.71 7.85 -2.39 -0.02 0.69 16 40 H 0.29 -0.94 8.06 -2.91 -0.02 -0.97 16 41 H 0.42 4.22 8.54 -92.71 -0.79 3.43 16 42 H 0.42 4.46 8.93 -92.71 -0.83 3.64 16 Total: -1.00 -95.48 353.75 0.16 -95.32 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -0.84 Total: 18.15 kcal Atomic # 6 Polarization: 20.48 SS G_CDS: 8.27 Total: 28.76 kcal Atomic # 7 Polarization: -140.02 SS G_CDS: -9.06 Total: -149.08 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -0.11 Total: -40.45 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.90 Total: 47.31 kcal Total: -95.48 0.16 -95.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986293120.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.992 kcal (2) G-P(sol) polarization free energy of solvation -95.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds